Wall clock time and date at job start Mon Mar 30 2020 04:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48491 * 109.46986 * 85.58211 * 3 2 1 5 5 H 1.48495 * 109.46822 * 325.57757 * 3 2 1 6 6 H 1.48502 * 109.46609 * 205.57964 * 3 2 1 7 7 C 1.39935 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99925 * 36.46999 * 7 2 1 9 9 C 1.41406 * 119.99839 * 216.47514 * 7 2 1 10 10 C 1.40777 * 120.21051 * 20.98793 * 9 7 2 11 11 C 1.37647 * 119.88108 * 180.02562 * 10 9 7 12 12 C 1.38526 * 120.32330 * 359.97438 * 11 10 9 13 13 C 1.39246 * 120.43345 * 359.97438 * 12 11 10 14 14 N 1.39931 * 119.95194 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00091 * 213.87062 * 14 13 12 16 16 O 1.21281 * 120.00387 * 4.43897 * 15 14 13 17 17 C 1.50707 * 120.00001 * 184.43713 * 15 14 13 18 18 H 1.08996 * 109.87492 * 40.42584 * 17 15 14 19 19 C 1.54319 * 109.89065 * 279.22068 * 17 15 14 20 20 C 1.55133 * 103.01759 * 218.31016 * 19 17 15 21 21 C 1.54901 * 101.65532 * 35.65528 * 20 19 17 22 22 N 1.47444 * 109.88679 * 161.45108 * 17 15 14 23 23 C 1.38289 * 120.09952 * 359.76435 * 13 12 11 24 24 H 0.96996 * 119.99856 * 185.10707 * 1 2 3 25 25 H 1.07995 * 120.05873 * 0.02652 * 10 9 7 26 26 H 1.07998 * 119.83180 * 180.02562 * 11 10 9 27 27 H 1.07998 * 119.78120 * 179.97438 * 12 11 10 28 28 H 0.96998 * 120.00410 * 33.86418 * 14 13 12 29 29 H 1.08998 * 110.70267 * 336.69922 * 19 17 15 30 30 H 1.09004 * 110.70102 * 99.92341 * 19 17 15 31 31 H 1.09000 * 110.99320 * 277.55899 * 20 19 17 32 32 H 1.09003 * 110.98916 * 153.74448 * 20 19 17 33 33 H 1.09000 * 110.37449 * 204.09608 * 21 20 19 34 34 H 1.08997 * 110.46982 * 81.80954 * 21 20 19 35 35 H 1.00906 * 111.00085 * 356.15394 * 22 17 15 36 36 H 1.07999 * 120.15564 * 180.25955 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3965 2.1003 1.3958 5 1 1.4897 2.6238 -0.7914 6 1 3.5835 1.4149 -0.6045 7 6 2.0080 -1.2119 -0.0005 8 1 1.6266 -2.0553 -0.5569 9 6 3.2143 -1.3322 0.7274 10 6 3.4979 -0.4420 1.7805 11 6 4.6745 -0.5649 2.4843 12 6 5.5815 -1.5611 2.1619 13 6 5.3140 -2.4494 1.1235 14 7 6.2370 -3.4523 0.8067 15 6 6.3911 -3.8466 -0.4728 16 8 5.7896 -3.2780 -1.3593 17 6 7.3110 -4.9941 -0.8020 18 1 7.2033 -5.7812 -0.0558 19 6 8.7725 -4.5005 -0.8426 20 6 9.3773 -5.2960 -2.0291 21 6 8.1778 -5.3592 -3.0073 22 7 6.9918 -5.5246 -2.1402 23 6 4.1350 -2.3455 0.4083 24 1 -0.4850 -0.8367 0.0748 25 1 2.7936 0.3359 2.0357 26 1 4.8911 0.1182 3.2923 27 1 6.5021 -1.6493 2.7196 28 1 6.7661 -3.8636 1.5080 29 1 8.8120 -3.4287 -1.0370 30 1 9.2873 -4.7437 0.0870 31 1 9.6787 -6.2956 -1.7158 32 1 10.2152 -4.7584 -2.4730 33 1 8.2796 -6.2124 -3.6780 34 1 8.1036 -4.4345 -3.5795 35 1 6.1888 -5.0564 -2.5328 36 1 3.9247 -3.0366 -0.3945 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313437202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:44 Heat of formation + Delta-G solvation = -21.842132 kcal Electronic energy + Delta-G solvation = -19003.258279 eV Core-core repulsion = 16065.260551 eV Total energy + Delta-G solvation = -2937.997728 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.31668 -38.14719 -36.86950 -34.59289 -33.33145 -30.30125 -30.17225 -29.97069 -27.99812 -24.92074 -23.18186 -21.30786 -21.11415 -20.73035 -19.64520 -18.35595 -17.59260 -16.37070 -15.88368 -15.33918 -15.07353 -14.61957 -14.06884 -13.81990 -13.58710 -13.41535 -12.86788 -12.58718 -12.44816 -12.14614 -11.99062 -11.71185 -11.39272 -11.36450 -11.13282 -11.04256 -10.71425 -10.34954 -10.09506 -9.80409 -9.53897 -9.21609 -8.83546 -8.57347 -7.72326 -7.42253 -7.13747 -4.48493 2.37608 2.72297 3.08989 3.23303 3.38258 3.44846 3.57385 4.04141 4.14355 4.41871 4.44408 4.58225 4.79934 5.01944 5.17644 5.32198 5.45322 5.55346 5.62185 5.65945 5.80426 5.96800 6.04407 6.25718 6.51344 6.64389 6.71773 6.85606 6.89032 7.25477 7.33213 7.49957 7.55696 7.69678 7.83550 7.96527 8.05370 8.39506 8.51708 8.67408 8.80063 9.86078 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.005082 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.597742 B = 5508.507241 C = 5939.976533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.058 3.942 3 Si 1.062 2.938 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.079 0.921 9 C 0.107 3.893 10 C -0.260 4.260 11 C -0.058 4.058 12 C -0.281 4.281 13 C 0.165 3.835 14 N -0.664 5.664 15 C 0.490 3.510 16 O -0.517 6.517 17 C 0.059 3.941 18 H 0.105 0.895 19 C -0.132 4.132 20 C -0.127 4.127 21 C 0.042 3.958 22 N -0.666 5.666 23 C -0.212 4.212 24 H 0.291 0.709 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.401 0.599 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.357 0.643 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.828 -7.354 -0.167 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.166 4.166 3 Si 0.886 3.114 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.097 0.903 9 C 0.104 3.896 10 C -0.279 4.279 11 C -0.077 4.077 12 C -0.302 4.302 13 C 0.073 3.927 14 N -0.307 5.307 15 C 0.275 3.725 16 O -0.392 6.392 17 C -0.054 4.054 18 H 0.123 0.877 19 C -0.171 4.171 20 C -0.165 4.165 21 C -0.087 4.087 22 N -0.301 5.301 23 C -0.233 4.233 24 H 0.102 0.898 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.235 0.765 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.178 0.822 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.173 -6.079 -0.794 15.443 hybrid contribution 0.287 -1.012 0.339 1.106 sum 14.460 -7.091 -0.454 16.112 Atomic orbital electron populations 1.70560 1.08851 1.33226 1.28293 1.27296 0.95115 1.04728 0.89484 0.83802 0.76366 0.73190 0.78020 1.19858 1.21176 1.18927 1.20554 1.05540 1.00109 1.28407 0.90325 1.17514 0.91102 0.90433 0.90585 1.21023 0.99721 1.05489 1.01678 1.20356 0.93830 0.96003 0.97513 1.19959 1.02040 1.02528 1.05718 1.17511 0.88826 0.89424 0.96952 1.43479 1.40460 1.38491 1.08314 1.21222 0.82975 0.85271 0.82990 1.90751 1.47122 1.54997 1.46295 1.22371 0.93935 0.94327 0.94789 0.87709 1.22763 0.93408 1.00827 1.00069 1.22699 0.97603 1.00704 0.95449 1.22880 0.89481 1.00758 0.95581 1.62212 1.07575 1.58831 1.01444 1.20857 0.93393 1.05070 1.04010 0.89769 0.88057 0.88611 0.88949 0.76531 0.90770 0.89887 0.90417 0.90592 0.90058 0.93558 0.82187 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.15 13.66 55.55 0.76 -20.39 16 2 C 0.06 1.54 5.11 -17.34 -0.09 1.46 16 3 Si 1.06 24.60 25.79 -169.99 -4.38 20.22 16 4 H -0.27 -5.96 6.53 56.52 0.37 -5.59 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.55 9.28 -37.74 -0.35 -14.90 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.11 2.89 5.21 -106.85 -0.56 2.33 16 10 C -0.26 -6.50 7.71 -38.84 -0.30 -6.80 16 11 C -0.06 -1.29 10.02 -39.69 -0.40 -1.69 16 12 C -0.28 -5.94 9.97 -39.10 -0.39 -6.33 16 13 C 0.16 3.64 6.26 -83.77 -0.52 3.12 16 14 N -0.66 -11.41 5.34 -9.91 -0.05 -11.46 16 15 C 0.49 8.51 6.64 -10.98 -0.07 8.44 16 16 O -0.52 -11.33 13.29 5.56 0.07 -11.26 16 17 C 0.06 0.76 3.90 -67.87 -0.26 0.49 16 18 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 19 C -0.13 -1.35 6.46 -24.91 -0.16 -1.51 16 20 C -0.13 -1.13 7.08 -24.60 -0.17 -1.30 16 21 C 0.04 0.46 7.57 -2.30 -0.02 0.44 16 22 N -0.67 -8.94 7.34 -105.03 -0.77 -9.71 16 23 C -0.21 -5.44 8.39 -38.68 -0.32 -5.77 16 24 H 0.29 7.58 8.73 -40.82 -0.36 7.23 16 25 H 0.10 2.50 4.94 -52.49 -0.26 2.25 16 26 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 27 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 28 H 0.40 5.20 8.82 -40.82 -0.36 4.84 16 29 H 0.07 0.87 7.84 -51.93 -0.41 0.47 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.36 5.53 7.18 -39.29 -0.28 5.25 16 36 H 0.11 2.87 6.44 -52.49 -0.34 2.53 16 LS Contribution 296.72 15.07 4.47 4.47 Total: -1.00 -30.52 296.72 -8.16 -38.68 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.64 Total: 11.47 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -3.62 Total: -22.02 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -0.07 Total: -41.57 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -4.38 Total: 20.22 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.52 -8.16 -38.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313437202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.837 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds