Wall clock time and date at job start Mon Mar 30 2020 04:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86800 * 120.00041 * 2 1 4 4 H 1.48491 * 109.46986 * 85.58211 * 3 2 1 5 5 H 1.48495 * 109.46822 * 325.57757 * 3 2 1 6 6 H 1.48502 * 109.46609 * 205.57964 * 3 2 1 7 7 C 1.39935 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99925 * 36.46999 * 7 2 1 9 9 C 1.41406 * 119.99839 * 216.47514 * 7 2 1 10 10 C 1.40777 * 120.21051 * 20.98793 * 9 7 2 11 11 C 1.37647 * 119.88108 * 180.02562 * 10 9 7 12 12 C 1.38526 * 120.32330 * 359.97438 * 11 10 9 13 13 C 1.39246 * 120.43345 * 359.97438 * 12 11 10 14 14 N 1.39931 * 119.95194 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00091 * 213.87062 * 14 13 12 16 16 O 1.21281 * 120.00387 * 4.43897 * 15 14 13 17 17 C 1.50707 * 120.00001 * 184.43713 * 15 14 13 18 18 H 1.08996 * 109.87492 * 40.42584 * 17 15 14 19 19 C 1.54319 * 109.89065 * 279.22068 * 17 15 14 20 20 C 1.55133 * 103.01759 * 218.31016 * 19 17 15 21 21 C 1.54901 * 101.65532 * 35.65528 * 20 19 17 22 22 N 1.47444 * 109.88679 * 161.45108 * 17 15 14 23 23 C 1.38289 * 120.09952 * 359.76435 * 13 12 11 24 24 H 0.96996 * 119.99856 * 185.10707 * 1 2 3 25 25 H 1.07995 * 120.05873 * 0.02652 * 10 9 7 26 26 H 1.07998 * 119.83180 * 180.02562 * 11 10 9 27 27 H 1.07998 * 119.78120 * 179.97438 * 12 11 10 28 28 H 0.96998 * 120.00410 * 33.86418 * 14 13 12 29 29 H 1.08998 * 110.70267 * 336.69922 * 19 17 15 30 30 H 1.09004 * 110.70102 * 99.92341 * 19 17 15 31 31 H 1.09000 * 110.99320 * 277.55899 * 20 19 17 32 32 H 1.09003 * 110.98916 * 153.74448 * 20 19 17 33 33 H 1.09000 * 110.37449 * 204.09608 * 21 20 19 34 34 H 1.08997 * 110.46982 * 81.80954 * 21 20 19 35 35 H 1.00906 * 111.00085 * 356.15394 * 22 17 15 36 36 H 1.07999 * 120.15564 * 180.25955 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3965 2.1003 1.3958 5 1 1.4897 2.6238 -0.7914 6 1 3.5835 1.4149 -0.6045 7 6 2.0080 -1.2119 -0.0005 8 1 1.6266 -2.0553 -0.5569 9 6 3.2143 -1.3322 0.7274 10 6 3.4979 -0.4420 1.7805 11 6 4.6745 -0.5649 2.4843 12 6 5.5815 -1.5611 2.1619 13 6 5.3140 -2.4494 1.1235 14 7 6.2370 -3.4523 0.8067 15 6 6.3911 -3.8466 -0.4728 16 8 5.7896 -3.2780 -1.3593 17 6 7.3110 -4.9941 -0.8020 18 1 7.2033 -5.7812 -0.0558 19 6 8.7725 -4.5005 -0.8426 20 6 9.3773 -5.2960 -2.0291 21 6 8.1778 -5.3592 -3.0073 22 7 6.9918 -5.5246 -2.1402 23 6 4.1350 -2.3455 0.4083 24 1 -0.4850 -0.8367 0.0748 25 1 2.7936 0.3359 2.0357 26 1 4.8911 0.1182 3.2923 27 1 6.5021 -1.6493 2.7196 28 1 6.7661 -3.8636 1.5080 29 1 8.8120 -3.4287 -1.0370 30 1 9.2873 -4.7437 0.0870 31 1 9.6787 -6.2956 -1.7158 32 1 10.2152 -4.7584 -2.4730 33 1 8.2796 -6.2124 -3.6780 34 1 8.1036 -4.4345 -3.5795 35 1 6.1888 -5.0564 -2.5328 36 1 3.9247 -3.0366 -0.3945 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313437202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:44 Heat of formation + Delta-G solvation = -44.560267 kcal Electronic energy + Delta-G solvation = -19004.243411 eV Core-core repulsion = 16065.260551 eV Total energy + Delta-G solvation = -2938.982860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.70079 -39.63093 -38.27716 -36.34265 -35.16062 -32.04815 -31.32319 -31.15896 -29.46573 -26.87442 -24.55518 -22.67255 -22.56863 -22.08173 -21.01696 -20.24140 -18.88201 -17.84269 -17.33276 -16.75683 -16.39470 -16.11070 -15.92710 -15.49019 -15.06607 -14.52466 -14.34080 -14.29143 -13.87878 -13.52015 -13.28645 -13.09652 -12.95996 -12.68462 -12.54301 -12.18706 -12.13400 -11.91223 -11.81850 -11.50608 -11.32316 -10.84863 -10.72887 -9.67342 -9.63863 -9.47149 -8.90786 -6.57062 0.65703 0.83643 1.34292 1.51669 1.59415 1.74954 2.08549 2.15916 2.48076 3.15865 3.48482 3.49998 3.73017 3.75558 4.15492 4.29717 4.34150 4.51321 4.55118 4.70196 4.76665 4.82989 4.94146 4.96158 5.01449 5.02245 5.06967 5.23805 5.38411 5.58023 5.69025 5.76030 5.81825 5.87551 6.06481 6.09039 6.41480 6.50889 6.63752 6.81969 7.17701 7.79563 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.005082 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.597742 B = 5508.507241 C = 5939.976533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.031 3.969 3 Si 1.095 2.905 4 H -0.244 1.244 5 H -0.268 1.268 6 H -0.278 1.278 7 C -0.567 4.567 8 H 0.039 0.961 9 C 0.087 3.913 10 C -0.273 4.273 11 C -0.057 4.057 12 C -0.257 4.257 13 C 0.170 3.830 14 N -0.652 5.652 15 C 0.486 3.514 16 O -0.569 6.569 17 C 0.066 3.934 18 H 0.131 0.869 19 C -0.128 4.128 20 C -0.117 4.117 21 C 0.034 3.966 22 N -0.677 5.677 23 C -0.244 4.244 24 H 0.283 0.717 25 H 0.102 0.898 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.425 0.575 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.031 0.969 35 H 0.340 0.660 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.899 -7.347 2.158 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.188 4.188 3 Si 0.914 3.086 4 H -0.169 1.169 5 H -0.194 1.194 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.084 3.916 10 C -0.292 4.292 11 C -0.076 4.076 12 C -0.278 4.278 13 C 0.077 3.923 14 N -0.298 5.298 15 C 0.274 3.726 16 O -0.447 6.447 17 C -0.047 4.047 18 H 0.149 0.851 19 C -0.166 4.166 20 C -0.154 4.154 21 C -0.095 4.095 22 N -0.309 5.309 23 C -0.266 4.266 24 H 0.094 0.906 25 H 0.120 0.880 26 H 0.158 0.842 27 H 0.160 0.840 28 H 0.264 0.736 29 H 0.075 0.925 30 H 0.136 0.864 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.159 0.841 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.274 -6.120 1.568 19.335 hybrid contribution -0.775 -1.191 -0.347 1.463 sum 17.498 -7.311 1.220 19.003 Atomic orbital electron populations 1.70614 1.09149 1.32667 1.30522 1.28329 0.95252 1.06731 0.88483 0.83398 0.74794 0.70714 0.79703 1.16888 1.19359 1.20295 1.20475 1.07720 1.00126 1.31091 0.94257 1.17721 0.90986 0.91657 0.91262 1.21166 1.01295 1.05230 1.01547 1.20878 0.92412 0.96615 0.97681 1.20555 1.03000 1.00155 1.04080 1.17640 0.88188 0.90330 0.96176 1.43387 1.39582 1.37495 1.09293 1.22218 0.82571 0.85576 0.82227 1.90744 1.49209 1.56873 1.47873 1.22591 0.94295 0.92791 0.95016 0.85112 1.22825 0.91536 0.99880 1.02393 1.22720 0.96857 1.01791 0.94078 1.23053 0.89661 1.00706 0.96087 1.62347 1.07970 1.58359 1.02227 1.20803 0.95500 1.05405 1.04849 0.90638 0.88023 0.84198 0.84030 0.73573 0.92530 0.86408 0.88513 0.88902 0.88663 0.95011 0.84085 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.52 13.66 21.83 0.30 -45.23 16 2 C 0.03 1.73 5.11 85.25 0.44 2.17 16 3 Si 1.10 50.12 25.79 68.60 1.77 51.89 16 4 H -0.24 -10.01 6.53 99.48 0.65 -9.36 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.57 -34.15 9.28 23.46 0.22 -33.93 16 8 H 0.04 2.56 8.06 -2.91 -0.02 2.53 16 9 C 0.09 4.86 5.21 -21.31 -0.11 4.74 16 10 C -0.27 -13.40 7.71 22.75 0.18 -13.22 16 11 C -0.06 -2.32 10.02 22.20 0.22 -2.09 16 12 C -0.26 -9.69 9.97 22.58 0.23 -9.46 16 13 C 0.17 7.24 6.26 38.10 0.24 7.47 16 14 N -0.65 -20.85 5.34 -303.65 -1.62 -22.47 16 15 C 0.49 16.55 6.64 87.66 0.58 17.13 16 16 O -0.57 -25.93 13.29 -3.03 -0.04 -25.97 16 17 C 0.07 1.55 3.90 44.51 0.17 1.72 16 18 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 19 C -0.13 -2.15 6.46 31.77 0.21 -1.94 16 20 C -0.12 -1.66 7.08 31.98 0.23 -1.43 16 21 C 0.03 0.68 7.57 86.77 0.66 1.34 16 22 N -0.68 -17.66 7.34 -486.20 -3.57 -21.23 16 23 C -0.24 -12.97 8.39 22.85 0.19 -12.78 16 24 H 0.28 15.84 8.73 -92.71 -0.81 15.03 16 25 H 0.10 4.92 4.94 -2.91 -0.01 4.90 16 26 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 27 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 28 H 0.43 9.19 8.82 -92.71 -0.82 8.37 16 29 H 0.06 1.18 7.84 -2.39 -0.02 1.16 16 30 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.34 10.98 7.18 -89.69 -0.64 10.34 16 36 H 0.08 4.52 6.44 -2.91 -0.02 4.50 16 Total: -1.00 -72.38 296.72 -0.17 -72.55 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -0.45 Total: 30.74 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 3.44 Total: -40.29 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -4.89 Total: -88.92 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.04 Total: -25.97 kcal Atomic # 14 Polarization: 50.12 SS G_CDS: 1.77 Total: 51.89 kcal Total: -72.38 -0.17 -72.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313437202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.990 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds