Wall clock time and date at job start Mon Mar 30 2020 04:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38997 * 120.00182 * 2 1 4 4 C 1.39139 * 119.70481 * 0.27816 * 3 2 1 5 5 C 1.38305 * 119.10030 * 180.22816 * 4 3 2 6 6 C 1.50696 * 120.74822 * 179.77916 * 5 4 3 7 7 N 1.46498 * 109.46988 * 269.71597 * 6 5 4 8 8 C 1.36944 * 119.99759 * 270.00207 * 7 6 5 9 9 H 1.07996 * 120.00385 * 19.80844 * 8 7 6 10 10 C 1.38812 * 119.99614 * 199.80648 * 8 7 6 11 11 N 1.31614 * 120.00180 * 21.97267 * 10 8 7 12 12 Si 1.86805 * 119.99839 * 201.96839 * 10 8 7 13 13 H 1.48504 * 109.46938 * 90.00342 * 12 10 8 14 14 H 1.48502 * 109.46893 * 209.99991 * 12 10 8 15 15 H 1.48498 * 109.47020 * 330.00380 * 12 10 8 16 16 C 1.46496 * 120.00111 * 90.00383 * 7 6 5 17 17 C 1.47192 * 109.47190 * 83.93530 * 16 7 6 18 18 N 7.57932 * 63.32244 * 347.62669 * 2 1 3 19 19 C 1.38886 * 118.50106 * 359.50068 * 5 4 3 20 20 C 1.38018 * 119.32962 * 0.25384 * 19 5 4 21 21 C 1.50698 * 119.57198 * 180.02562 * 20 19 5 22 22 N 1.31973 * 120.86129 * 0.02562 * 20 19 5 23 23 H 1.08997 * 109.47151 * 299.99817 * 1 2 3 24 24 H 1.09003 * 109.46852 * 60.00402 * 1 2 3 25 25 H 1.09000 * 109.47144 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00150 * 180.02562 * 2 1 3 27 27 H 1.08002 * 120.45084 * 0.02562 * 4 3 2 28 28 H 1.09001 * 109.46742 * 149.71895 * 6 5 4 29 29 H 1.09000 * 109.47550 * 29.71512 * 6 5 4 30 30 H 0.97001 * 120.00722 * 179.97438 * 11 10 8 31 31 H 1.08998 * 109.47141 * 203.93903 * 16 7 6 32 32 H 1.09004 * 109.47281 * 323.93552 * 16 7 6 33 33 H 1.07996 * 120.33186 * 180.23405 * 19 5 4 34 34 H 1.08997 * 109.47610 * 89.99821 * 21 20 19 35 35 H 1.09003 * 109.47499 * 210.00329 * 21 20 19 36 36 H 1.09002 * 109.47230 * 329.99729 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2037 0.0000 4 6 1.4582 2.4051 0.0059 5 6 2.1623 3.5955 0.0010 6 6 1.4399 4.9180 0.0021 7 7 1.2058 5.3477 -1.3788 8 6 2.1373 6.1170 -2.0237 9 1 3.1557 6.1456 -1.6654 10 6 1.7724 6.8601 -3.1379 11 7 0.5110 7.1831 -3.3293 12 14 3.0719 7.4016 -4.3658 13 1 3.2235 6.3630 -5.4164 14 1 2.6575 8.6826 -4.9924 15 1 4.3675 7.5895 -3.6649 16 6 -0.0246 4.9544 -2.0697 17 6 -1.1044 5.8917 -1.7206 18 7 -1.9379 6.6152 -1.4512 19 6 3.5502 3.5445 0.0010 20 6 4.1817 2.3172 0.0005 21 6 5.6874 2.2555 0.0011 22 7 3.4840 1.1970 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9500 -0.8400 -0.0004 27 1 0.3782 2.4081 0.0108 28 1 2.0468 5.6631 0.5165 29 1 0.4846 4.8098 0.5158 30 1 0.2560 7.7027 -4.1077 31 1 0.1409 4.9756 -3.1469 32 1 -0.3060 3.9463 -1.7652 33 1 4.1295 4.4560 0.0011 34 1 6.0501 2.2401 1.0288 35 1 6.0143 1.3518 -0.5132 36 1 6.0871 3.1302 -0.5121 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000320513000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:46 Heat of formation + Delta-G solvation = 88.152787 kcal Electronic energy + Delta-G solvation = -19113.566447 eV Core-core repulsion = 16212.631208 eV Total energy + Delta-G solvation = -2900.935239 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93230 -36.64161 -35.73323 -34.45120 -32.90931 -31.17999 -30.79648 -27.57653 -26.87358 -26.06288 -26.02266 -22.45749 -21.29295 -20.35306 -17.57101 -17.14433 -16.20734 -15.60700 -15.30769 -15.11521 -14.58657 -14.47521 -13.82662 -13.76203 -13.55016 -13.43125 -12.57347 -12.28535 -12.14397 -12.09944 -12.03318 -11.64895 -11.59266 -11.25406 -11.15741 -10.91862 -10.65547 -10.22464 -10.10441 -9.95959 -9.71652 -9.15532 -8.94723 -8.69572 -7.36612 -7.21044 -5.99560 -3.40141 1.71863 1.96049 3.32302 3.36656 3.40389 3.41577 4.06257 4.33937 4.36102 4.47905 4.83694 5.12111 5.15397 5.28661 5.43864 5.45777 5.52614 5.64409 5.64920 5.71070 5.79334 5.80668 5.87029 5.93364 6.19141 6.32867 6.43657 6.45565 6.65164 6.91108 6.94162 7.08857 7.35401 7.64957 7.78179 8.10049 8.56683 8.91809 9.16323 9.57358 10.01975 11.08934 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.007085 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.858287 B = 3950.829070 C = 5079.094470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.738 5.738 3 C 0.395 3.605 4 C -0.235 4.235 5 C 0.005 3.995 6 C 0.176 3.824 7 N -0.572 5.572 8 C -0.266 4.266 9 H 0.081 0.919 10 C 0.007 3.993 11 N -0.898 5.898 12 Si 0.907 3.093 13 H -0.285 1.285 14 H -0.292 1.292 15 H -0.278 1.278 16 C 0.260 3.740 17 C 0.249 3.751 18 N -0.505 5.505 19 C -0.206 4.206 20 C 0.161 3.839 21 C -0.099 4.099 22 N -0.555 5.555 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.400 0.600 27 H 0.124 0.876 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.260 0.740 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 -13.441 5.942 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.372 5.372 3 C 0.160 3.840 4 C -0.260 4.260 5 C -0.006 4.006 6 C 0.050 3.950 7 N -0.292 5.292 8 C -0.395 4.395 9 H 0.098 0.902 10 C -0.192 4.192 11 N -0.541 5.541 12 Si 0.736 3.264 13 H -0.212 1.212 14 H -0.219 1.219 15 H -0.203 1.203 16 C 0.130 3.870 17 C -0.070 4.070 18 N -0.186 5.186 19 C -0.229 4.229 20 C 0.024 3.976 21 C -0.157 4.157 22 N -0.275 5.275 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.234 0.766 27 H 0.142 0.858 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.214 -12.970 6.192 14.727 hybrid contribution 0.638 0.646 -0.992 1.345 sum 3.852 -12.324 5.200 13.920 Atomic orbital electron populations 1.21518 0.79370 1.02160 1.01498 1.44094 1.05396 1.05134 1.82618 1.18241 0.88122 0.86146 0.91469 1.21208 1.00315 0.91292 1.13171 1.21148 0.93853 0.96757 0.88854 1.19885 0.97422 0.90403 0.87321 1.43884 1.18084 1.58254 1.08977 1.19237 0.90138 1.21130 1.08948 0.90171 1.24920 0.96265 0.97483 1.00527 1.69903 1.15698 1.39594 1.28950 0.86219 0.81030 0.77569 0.81557 1.21213 1.21872 1.20285 1.18178 0.80190 0.89054 0.99612 1.30438 0.92306 0.93457 0.90776 1.80809 1.14754 1.11091 1.11970 1.21526 0.94759 0.98128 1.08491 1.20753 0.95738 0.87794 0.93286 1.20656 0.89567 1.03069 1.02389 1.66819 1.06158 1.31880 1.22623 0.92888 0.92596 0.90916 0.76619 0.85827 0.91409 0.92955 0.92972 0.87419 0.92489 0.85469 0.91007 0.91142 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.91 9.92 59.85 0.59 1.50 16 2 N -0.74 -8.91 5.89 -67.20 -0.40 -9.31 16 3 C 0.39 6.13 7.65 -155.02 -1.19 4.94 16 4 C -0.23 -3.73 9.03 -39.22 -0.35 -4.08 16 5 C 0.00 0.08 5.50 -104.36 -0.57 -0.49 16 6 C 0.18 3.28 5.85 -5.20 -0.03 3.25 16 7 N -0.57 -12.63 2.47 -177.96 -0.44 -13.07 16 8 C -0.27 -6.54 9.63 -15.06 -0.14 -6.69 16 9 H 0.08 1.93 7.92 -52.49 -0.42 1.52 16 10 C 0.01 0.19 4.83 -17.43 -0.08 0.10 16 11 N -0.90 -24.41 9.60 55.49 0.53 -23.88 16 12 Si 0.91 20.63 29.61 -169.99 -5.03 15.59 16 13 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 C 0.26 5.50 5.41 -6.83 -0.04 5.47 16 17 C 0.25 5.88 13.56 -20.76 -0.28 5.60 16 18 N -0.51 -12.84 18.54 42.15 0.78 -12.06 16 19 C -0.21 -3.43 9.44 -39.42 -0.37 -3.80 16 20 C 0.16 2.54 6.78 -82.61 -0.56 1.98 16 21 C -0.10 -1.20 10.17 36.00 0.37 -0.83 16 22 N -0.56 -9.11 10.31 -8.67 -0.09 -9.20 16 23 H 0.05 0.48 7.92 -51.93 -0.41 0.06 16 24 H 0.06 0.53 7.94 -51.93 -0.41 0.12 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.40 4.29 8.95 -40.82 -0.37 3.92 16 27 H 0.12 1.77 6.71 -52.49 -0.35 1.42 16 28 H 0.07 1.26 8.00 -51.93 -0.42 0.85 16 29 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.11 2.47 6.61 -51.93 -0.34 2.13 16 32 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 33 H 0.13 2.03 8.06 -52.49 -0.42 1.60 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 LS Contribution 314.53 15.07 4.74 4.74 Total: -1.00 -30.62 314.53 -7.37 -37.98 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.80 Total: 2.25 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -2.66 Total: 6.95 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: 0.39 Total: -67.51 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.62 -7.37 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320513000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.136 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds