Wall clock time and date at job start Mon Mar 30 2020 04:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38997 * 120.00182 * 2 1 4 4 C 1.39139 * 119.70481 * 0.27816 * 3 2 1 5 5 C 1.38305 * 119.10030 * 180.22816 * 4 3 2 6 6 C 1.50696 * 120.74822 * 179.77916 * 5 4 3 7 7 N 1.46498 * 109.46988 * 269.71597 * 6 5 4 8 8 C 1.36944 * 119.99759 * 270.00207 * 7 6 5 9 9 H 1.07996 * 120.00385 * 19.80844 * 8 7 6 10 10 C 1.38812 * 119.99614 * 199.80648 * 8 7 6 11 11 N 1.31614 * 120.00180 * 21.97267 * 10 8 7 12 12 Si 1.86805 * 119.99839 * 201.96839 * 10 8 7 13 13 H 1.48504 * 109.46938 * 90.00342 * 12 10 8 14 14 H 1.48502 * 109.46893 * 209.99991 * 12 10 8 15 15 H 1.48498 * 109.47020 * 330.00380 * 12 10 8 16 16 C 1.46496 * 120.00111 * 90.00383 * 7 6 5 17 17 C 1.47192 * 109.47190 * 83.93530 * 16 7 6 18 18 N 7.57932 * 63.32244 * 347.62669 * 2 1 3 19 19 C 1.38886 * 118.50106 * 359.50068 * 5 4 3 20 20 C 1.38018 * 119.32962 * 0.25384 * 19 5 4 21 21 C 1.50698 * 119.57198 * 180.02562 * 20 19 5 22 22 N 1.31973 * 120.86129 * 0.02562 * 20 19 5 23 23 H 1.08997 * 109.47151 * 299.99817 * 1 2 3 24 24 H 1.09003 * 109.46852 * 60.00402 * 1 2 3 25 25 H 1.09000 * 109.47144 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00150 * 180.02562 * 2 1 3 27 27 H 1.08002 * 120.45084 * 0.02562 * 4 3 2 28 28 H 1.09001 * 109.46742 * 149.71895 * 6 5 4 29 29 H 1.09000 * 109.47550 * 29.71512 * 6 5 4 30 30 H 0.97001 * 120.00722 * 179.97438 * 11 10 8 31 31 H 1.08998 * 109.47141 * 203.93903 * 16 7 6 32 32 H 1.09004 * 109.47281 * 323.93552 * 16 7 6 33 33 H 1.07996 * 120.33186 * 180.23405 * 19 5 4 34 34 H 1.08997 * 109.47610 * 89.99821 * 21 20 19 35 35 H 1.09003 * 109.47499 * 210.00329 * 21 20 19 36 36 H 1.09002 * 109.47230 * 329.99729 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2037 0.0000 4 6 1.4582 2.4051 0.0059 5 6 2.1623 3.5955 0.0010 6 6 1.4399 4.9180 0.0021 7 7 1.2058 5.3477 -1.3788 8 6 2.1373 6.1170 -2.0237 9 1 3.1557 6.1456 -1.6654 10 6 1.7724 6.8601 -3.1379 11 7 0.5110 7.1831 -3.3293 12 14 3.0719 7.4016 -4.3658 13 1 3.2235 6.3630 -5.4164 14 1 2.6575 8.6826 -4.9924 15 1 4.3675 7.5895 -3.6649 16 6 -0.0246 4.9544 -2.0697 17 6 -1.1044 5.8917 -1.7206 18 7 -1.9379 6.6152 -1.4512 19 6 3.5502 3.5445 0.0010 20 6 4.1817 2.3172 0.0005 21 6 5.6874 2.2555 0.0011 22 7 3.4840 1.1970 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9500 -0.8400 -0.0004 27 1 0.3782 2.4081 0.0108 28 1 2.0468 5.6631 0.5165 29 1 0.4846 4.8098 0.5158 30 1 0.2560 7.7027 -4.1077 31 1 0.1409 4.9756 -3.1469 32 1 -0.3060 3.9463 -1.7652 33 1 4.1295 4.4560 0.0011 34 1 6.0501 2.2401 1.0288 35 1 6.0143 1.3518 -0.5132 36 1 6.0871 3.1302 -0.5121 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000320513000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:45 Heat of formation + Delta-G solvation = 70.202245 kcal Electronic energy + Delta-G solvation = -19114.344841 eV Core-core repulsion = 16212.631208 eV Total energy + Delta-G solvation = -2901.713633 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.12111 -38.31559 -36.80370 -36.24400 -34.45447 -32.60186 -32.12049 -29.18762 -27.96700 -27.71571 -26.97872 -24.11291 -22.42508 -21.67757 -19.33752 -18.38485 -17.70165 -17.07964 -16.94108 -16.35298 -15.77967 -15.65018 -15.45297 -15.29887 -14.64543 -14.45741 -14.13068 -13.88887 -13.44718 -13.33721 -13.08683 -13.06623 -12.90700 -12.85203 -12.74902 -12.66851 -12.23339 -11.95354 -11.93385 -11.72879 -10.85446 -10.69193 -10.28488 -10.16125 -9.03034 -8.44519 -7.93726 -5.33304 0.50870 0.71071 1.51472 1.55470 1.61620 2.27715 2.41378 2.49205 2.59734 3.10270 3.27071 3.75705 3.83635 3.85368 4.03399 4.28473 4.41920 4.52677 4.57476 4.68586 4.75272 4.83595 4.85950 4.90826 4.98858 5.02250 5.06517 5.18715 5.29047 5.34960 5.69069 5.76487 5.86364 6.23762 6.29992 6.77867 7.03005 7.30780 7.42132 7.73594 8.15287 9.12720 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.007085 C = 0.005511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.858287 B = 3950.829070 C = 5079.094470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.731 5.731 3 C 0.388 3.612 4 C -0.241 4.241 5 C -0.005 4.005 6 C 0.180 3.820 7 N -0.583 5.583 8 C -0.257 4.257 9 H 0.083 0.917 10 C -0.040 4.040 11 N -0.928 5.928 12 Si 0.960 3.040 13 H -0.285 1.285 14 H -0.306 1.306 15 H -0.269 1.269 16 C 0.263 3.737 17 C 0.261 3.739 18 N -0.543 5.543 19 C -0.225 4.225 20 C 0.156 3.844 21 C -0.096 4.096 22 N -0.570 5.570 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.103 0.897 26 H 0.407 0.593 27 H 0.138 0.862 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.250 0.750 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 -15.246 6.469 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.365 5.365 3 C 0.152 3.848 4 C -0.267 4.267 5 C -0.015 4.015 6 C 0.054 3.946 7 N -0.303 5.303 8 C -0.387 4.387 9 H 0.101 0.899 10 C -0.236 4.236 11 N -0.573 5.573 12 Si 0.790 3.210 13 H -0.212 1.212 14 H -0.234 1.234 15 H -0.193 1.193 16 C 0.133 3.867 17 C -0.057 4.057 18 N -0.225 5.225 19 C -0.248 4.248 20 C 0.019 3.981 21 C -0.154 4.154 22 N -0.290 5.290 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.122 0.878 26 H 0.242 0.758 27 H 0.155 0.845 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.997 -14.826 6.750 16.774 hybrid contribution 0.413 1.097 -1.069 1.586 sum 4.410 -13.730 5.680 15.499 Atomic orbital electron populations 1.21744 0.77543 1.04300 1.01463 1.44277 1.06563 1.04349 1.81263 1.18534 0.88175 0.87265 0.90816 1.21310 1.01017 0.91033 1.13303 1.20934 0.94154 0.96239 0.90171 1.19917 0.98084 0.91067 0.85503 1.44059 1.17787 1.58038 1.10409 1.19500 0.90773 1.19951 1.08450 0.89921 1.25480 0.97492 0.98484 1.02108 1.70032 1.17120 1.41148 1.29034 0.85362 0.79556 0.76325 0.79759 1.21217 1.23397 1.19319 1.18334 0.79334 0.90343 0.98725 1.30991 0.91980 0.92997 0.89704 1.80802 1.16061 1.12267 1.13325 1.21622 0.94757 0.98696 1.09706 1.21254 0.97400 0.87334 0.92093 1.20721 0.87251 1.03699 1.03689 1.66950 1.06666 1.32102 1.23332 0.92565 0.92854 0.87844 0.75836 0.84453 0.91903 0.91885 0.94096 0.89093 0.88326 0.85455 0.89284 0.90704 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.43 9.92 127.77 1.27 2.70 16 2 N -0.73 -15.76 5.89 -366.54 -2.16 -17.92 16 3 C 0.39 11.24 7.65 133.07 1.02 12.26 16 4 C -0.24 -7.18 9.03 22.50 0.20 -6.98 16 5 C 0.00 -0.16 5.50 -19.69 -0.11 -0.26 16 6 C 0.18 6.47 5.85 85.63 0.50 6.98 16 7 N -0.58 -25.15 2.47 -716.94 -1.77 -26.92 16 8 C -0.26 -12.47 9.63 84.03 0.81 -11.66 16 9 H 0.08 3.91 7.92 -2.91 -0.02 3.89 16 10 C -0.04 -2.03 4.83 84.86 0.41 -1.62 16 11 N -0.93 -50.82 9.60 21.65 0.21 -50.61 16 12 Si 0.96 42.43 29.61 68.60 2.03 44.46 16 13 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.31 -14.17 7.11 99.48 0.71 -13.46 16 15 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 16 C 0.26 10.85 5.41 84.57 0.46 11.31 16 17 C 0.26 12.23 13.56 89.44 1.21 13.44 16 18 N -0.54 -27.58 18.54 20.00 0.37 -27.21 16 19 C -0.22 -7.20 9.44 22.37 0.21 -6.99 16 20 C 0.16 4.66 6.78 42.48 0.29 4.95 16 21 C -0.10 -2.13 10.17 71.24 0.72 -1.40 16 22 N -0.57 -17.65 10.31 -181.34 -1.87 -19.52 16 23 H 0.06 0.85 7.92 -2.39 -0.02 0.83 16 24 H 0.05 0.87 7.94 -2.39 -0.02 0.85 16 25 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.41 7.68 8.95 -92.71 -0.83 6.85 16 27 H 0.14 3.59 6.71 -2.91 -0.02 3.57 16 28 H 0.06 2.30 8.00 -2.39 -0.02 2.28 16 29 H 0.06 2.12 8.03 -2.39 -0.02 2.10 16 30 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 31 H 0.09 4.14 6.61 -2.39 -0.02 4.12 16 32 H 0.10 3.24 8.12 -2.39 -0.02 3.22 16 33 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 Total: -1.00 -64.49 314.53 4.07 -60.41 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.27 Total: 14.60 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 6.99 Total: 22.72 kcal Atomic # 7 Polarization: -136.97 SS G_CDS: -5.22 Total: -142.19 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -64.49 4.07 -60.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000320513000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.617 kcal (2) G-P(sol) polarization free energy of solvation -64.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds