Wall clock time and date at job start Mon Mar 30 2020 05:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46807 * 2 1 4 4 C 1.52998 * 109.47343 * 120.00251 * 2 1 3 5 5 H 1.09001 * 109.46928 * 299.99989 * 4 2 1 6 6 N 1.46497 * 109.47072 * 179.97438 * 4 2 1 7 7 C 1.36940 * 119.99872 * 85.00409 * 6 4 2 8 8 H 1.07997 * 119.99914 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00085 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00402 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99938 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47196 * 90.00449 * 11 9 7 13 13 H 1.48500 * 109.47301 * 210.00351 * 11 9 7 14 14 H 1.48502 * 109.47408 * 330.00857 * 11 9 7 15 15 C 1.50707 * 109.46954 * 60.00030 * 4 2 1 16 16 N 1.30797 * 126.24590 * 74.97526 * 15 4 2 17 17 N 1.28684 * 110.29131 * 180.02562 * 16 15 4 18 18 C 1.32311 * 109.47966 * 0.02562 * 17 16 15 19 19 C 1.40820 * 133.46245 * 179.97438 * 18 17 16 20 20 C 1.36027 * 119.22229 * 180.02562 * 19 18 17 21 21 C 1.40541 * 119.74777 * 0.02562 * 20 19 18 22 22 C 1.34958 * 120.36779 * 359.97438 * 21 20 19 23 23 N 1.36065 * 126.24610 * 254.99949 * 15 4 2 24 24 H 1.09003 * 109.46683 * 299.99551 * 1 2 3 25 25 H 1.08994 * 109.47002 * 59.99747 * 1 2 3 26 26 H 1.08999 * 109.46751 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46683 * 240.00449 * 2 1 3 28 28 H 1.09007 * 109.46354 * 180.02562 * 3 2 1 29 29 H 1.08990 * 109.47084 * 300.00075 * 3 2 1 30 30 H 1.08993 * 109.47152 * 60.00858 * 3 2 1 31 31 H 0.97001 * 120.00262 * 264.99877 * 6 4 2 32 32 H 0.96994 * 120.00170 * 179.97438 * 10 9 7 33 33 H 1.07991 * 120.39040 * 0.03452 * 19 18 17 34 34 H 1.07995 * 120.12130 * 180.02562 * 20 19 18 35 35 H 1.08007 * 119.81740 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.74624 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1392 6 7 3.5051 -0.7218 1.2488 7 6 4.1902 0.3528 1.7498 8 1 3.6506 1.2008 2.1448 9 6 5.5783 0.3526 1.7490 10 7 6.2369 1.3857 2.2300 11 14 6.5117 -1.1139 1.0651 12 1 6.7585 -0.9111 -0.3851 13 1 7.8096 -1.2489 1.7739 14 1 5.7090 -2.3475 1.2628 15 6 1.5378 -2.1422 1.2491 16 7 1.9829 -3.1197 0.5028 17 7 1.3344 -4.2028 0.7526 18 6 0.4267 -3.9682 1.6862 19 6 -0.5365 -4.7730 2.3247 20 6 -1.3437 -4.2194 3.2693 21 6 -1.2065 -2.8587 3.5933 22 6 -0.2789 -2.0998 2.9730 23 7 0.5381 -2.6421 2.0250 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.9898 -1.4833 0.8938 32 1 7.2069 1.3853 2.2298 33 1 -0.6331 -5.8174 2.0675 34 1 -2.0870 -4.8233 3.7684 35 1 -1.8466 -2.4181 4.3435 36 1 -0.1819 -1.0553 3.2300 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330696804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:29 Heat of formation + Delta-G solvation = 117.928045 kcal Electronic energy + Delta-G solvation = -19699.372008 eV Core-core repulsion = 16799.727921 eV Total energy + Delta-G solvation = -2899.644087 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.36606 -38.16402 -37.07305 -33.84553 -33.14270 -31.33631 -30.85766 -29.37342 -26.60049 -26.06473 -24.19456 -23.14644 -22.64092 -21.39002 -19.44432 -18.34610 -17.50658 -16.93088 -16.37228 -15.86169 -15.17872 -14.71468 -14.52076 -14.05568 -13.81487 -12.83682 -12.66609 -12.46714 -12.41967 -12.28228 -11.87591 -11.72614 -11.41174 -11.32638 -11.16206 -10.98113 -10.74394 -10.47962 -10.33042 -10.23718 -10.02526 -9.55988 -9.44869 -8.99521 -7.95934 -7.39650 -5.84592 -3.21511 0.60335 1.17824 2.41382 2.92545 3.36020 3.41216 3.47725 3.51948 4.12174 4.44575 4.54170 4.57330 4.75006 4.85425 4.88173 5.21149 5.36763 5.39224 5.46692 5.54933 5.60648 5.78871 5.82038 5.94634 6.03507 6.09372 6.17695 6.21382 6.30549 6.37607 6.44952 6.59889 6.91069 6.98451 7.28549 7.87284 8.32987 8.78083 9.10753 9.83065 10.02292 11.31902 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.006881 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.908934 B = 4068.210478 C = 4548.633742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.139 4.139 4 C 0.276 3.724 5 H 0.069 0.931 6 N -0.734 5.734 7 C -0.249 4.249 8 H 0.097 0.903 9 C 0.015 3.985 10 N -0.926 5.926 11 Si 0.876 3.124 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.273 1.273 15 C 0.170 3.830 16 N -0.249 5.249 17 N -0.293 5.293 18 C 0.177 3.823 19 C -0.079 4.079 20 C -0.094 4.094 21 C -0.150 4.150 22 C 0.079 3.921 23 N -0.389 5.389 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.037 0.963 30 H 0.045 0.955 31 H 0.373 0.627 32 H 0.261 0.739 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.092 -6.815 2.243 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.196 4.196 4 C 0.163 3.837 5 H 0.086 0.914 6 N -0.378 5.378 7 C -0.378 4.378 8 H 0.114 0.886 9 C -0.182 4.182 10 N -0.573 5.573 11 Si 0.706 3.294 12 H -0.206 1.206 13 H -0.217 1.217 14 H -0.199 1.199 15 C -0.094 4.094 16 N -0.087 5.087 17 N -0.138 5.138 18 C -0.073 4.073 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.172 4.172 22 C -0.044 4.044 23 N -0.070 5.070 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.207 0.793 32 H 0.071 0.929 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.975 -7.304 1.196 18.519 hybrid contribution -0.022 -0.421 0.563 0.703 sum -16.997 -7.725 1.759 18.753 Atomic orbital electron populations 1.21866 0.96779 1.00219 1.01420 1.21771 0.93603 0.98149 0.99322 1.21834 1.04838 0.93439 0.99539 1.18627 0.85976 0.81723 0.97342 0.91370 1.42728 0.98936 1.21354 1.74733 1.18981 0.89371 0.95552 1.33925 0.88557 1.24602 0.96101 0.97162 1.00362 1.69686 1.07226 1.29782 1.50590 0.86658 0.79804 0.83683 0.79275 1.20614 1.21678 1.19892 1.25885 0.90186 1.00484 0.92828 1.74192 1.19900 0.95085 1.19516 1.74944 1.06397 1.18628 1.13863 1.22350 1.01495 0.83485 0.99929 1.20214 0.93444 0.99944 0.96423 1.21103 0.98981 0.94962 0.96793 1.20859 0.99726 0.94426 1.02153 1.21722 0.91716 1.00592 0.90382 1.43802 1.25165 1.10743 1.27250 0.93095 0.92713 0.94279 0.90961 0.88834 0.94384 0.93625 0.79281 0.92859 0.83035 0.83902 0.82975 0.81422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.95 37.16 0.33 -1.72 16 2 C -0.11 -1.86 2.68 -90.62 -0.24 -2.10 16 3 C -0.14 -2.49 8.26 37.16 0.31 -2.18 16 4 C 0.28 5.36 2.50 -69.08 -0.17 5.19 16 5 H 0.07 1.26 7.65 -51.93 -0.40 0.86 16 6 N -0.73 -17.46 4.80 -54.55 -0.26 -17.72 16 7 C -0.25 -6.65 8.05 -15.06 -0.12 -6.77 16 8 H 0.10 2.66 7.62 -52.49 -0.40 2.26 16 9 C 0.01 0.42 5.50 -17.43 -0.10 0.32 16 10 N -0.93 -28.14 13.97 55.49 0.78 -27.37 16 11 Si 0.88 22.57 27.73 -169.99 -4.71 17.85 16 12 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 14 H -0.27 -7.02 6.52 56.52 0.37 -6.65 16 15 C 0.17 3.24 5.66 -154.22 -0.87 2.37 16 16 N -0.25 -5.30 11.89 32.94 0.39 -4.91 16 17 N -0.29 -5.80 12.31 31.14 0.38 -5.42 16 18 C 0.18 2.87 7.92 -156.06 -1.24 1.64 16 19 C -0.08 -0.89 10.11 -39.40 -0.40 -1.29 16 20 C -0.09 -0.79 10.07 -39.51 -0.40 -1.18 16 21 C -0.15 -1.27 9.98 -39.88 -0.40 -1.67 16 22 C 0.08 0.91 10.80 -16.69 -0.18 0.73 16 23 N -0.39 -6.16 2.95 -59.73 -0.18 -6.34 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.57 7.22 -51.93 -0.37 0.20 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.09 2.02 6.01 -51.92 -0.31 1.71 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.37 9.37 5.41 -40.82 -0.22 9.14 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.17 1.57 7.76 -52.48 -0.41 1.16 16 LS Contribution 299.73 15.07 4.52 4.52 Total: -1.00 -33.26 299.73 -7.22 -40.48 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.66 Total: 5.59 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.48 Total: -6.68 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 1.11 Total: -61.76 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.26 -7.22 -40.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330696804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.411 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds