Wall clock time and date at job start Mon Mar 30 2020 05:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46807 * 2 1 4 4 C 1.52998 * 109.47343 * 120.00251 * 2 1 3 5 5 H 1.09001 * 109.46928 * 299.99989 * 4 2 1 6 6 N 1.46497 * 109.47072 * 179.97438 * 4 2 1 7 7 C 1.36940 * 119.99872 * 85.00409 * 6 4 2 8 8 H 1.07997 * 119.99914 * 359.97438 * 7 6 4 9 9 C 1.38810 * 120.00085 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00402 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99938 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47196 * 90.00449 * 11 9 7 13 13 H 1.48500 * 109.47301 * 210.00351 * 11 9 7 14 14 H 1.48502 * 109.47408 * 330.00857 * 11 9 7 15 15 C 1.50707 * 109.46954 * 60.00030 * 4 2 1 16 16 N 1.30797 * 126.24590 * 74.97526 * 15 4 2 17 17 N 1.28684 * 110.29131 * 180.02562 * 16 15 4 18 18 C 1.32311 * 109.47966 * 0.02562 * 17 16 15 19 19 C 1.40820 * 133.46245 * 179.97438 * 18 17 16 20 20 C 1.36027 * 119.22229 * 180.02562 * 19 18 17 21 21 C 1.40541 * 119.74777 * 0.02562 * 20 19 18 22 22 C 1.34958 * 120.36779 * 359.97438 * 21 20 19 23 23 N 1.36065 * 126.24610 * 254.99949 * 15 4 2 24 24 H 1.09003 * 109.46683 * 299.99551 * 1 2 3 25 25 H 1.08994 * 109.47002 * 59.99747 * 1 2 3 26 26 H 1.08999 * 109.46751 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46683 * 240.00449 * 2 1 3 28 28 H 1.09007 * 109.46354 * 180.02562 * 3 2 1 29 29 H 1.08990 * 109.47084 * 300.00075 * 3 2 1 30 30 H 1.08993 * 109.47152 * 60.00858 * 3 2 1 31 31 H 0.97001 * 120.00262 * 264.99877 * 6 4 2 32 32 H 0.96994 * 120.00170 * 179.97438 * 10 9 7 33 33 H 1.07991 * 120.39040 * 0.03452 * 19 18 17 34 34 H 1.07995 * 120.12130 * 180.02562 * 20 19 18 35 35 H 1.08007 * 119.81740 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.74624 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1392 6 7 3.5051 -0.7218 1.2488 7 6 4.1902 0.3528 1.7498 8 1 3.6506 1.2008 2.1448 9 6 5.5783 0.3526 1.7490 10 7 6.2369 1.3857 2.2300 11 14 6.5117 -1.1139 1.0651 12 1 6.7585 -0.9111 -0.3851 13 1 7.8096 -1.2489 1.7739 14 1 5.7090 -2.3475 1.2628 15 6 1.5378 -2.1422 1.2491 16 7 1.9829 -3.1197 0.5028 17 7 1.3344 -4.2028 0.7526 18 6 0.4267 -3.9682 1.6862 19 6 -0.5365 -4.7730 2.3247 20 6 -1.3437 -4.2194 3.2693 21 6 -1.2065 -2.8587 3.5933 22 6 -0.2789 -2.0998 2.9730 23 7 0.5381 -2.6421 2.0250 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.9898 -1.4833 0.8938 32 1 7.2069 1.3853 2.2298 33 1 -0.6331 -5.8174 2.0675 34 1 -2.0870 -4.8233 3.7684 35 1 -1.8466 -2.4181 4.3435 36 1 -0.1819 -1.0553 3.2300 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330696804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:29 Heat of formation + Delta-G solvation = 96.286053 kcal Electronic energy + Delta-G solvation = -19700.310475 eV Core-core repulsion = 16799.727921 eV Total energy + Delta-G solvation = -2900.582554 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.55966 -39.21182 -38.59446 -35.19683 -34.70739 -33.02208 -32.11108 -30.64309 -27.97112 -27.58778 -25.17279 -24.46425 -24.22339 -22.72339 -20.94273 -19.95183 -18.87960 -18.00481 -17.60583 -16.83805 -16.76518 -16.07292 -15.78566 -15.69256 -15.22584 -14.73753 -13.94496 -13.76170 -13.55700 -13.38261 -13.31927 -13.03456 -13.02455 -12.76654 -12.50275 -12.48902 -12.20483 -12.04232 -11.97453 -11.71123 -11.53073 -11.51321 -11.02914 -10.55022 -9.42934 -9.03210 -8.04658 -5.37095 -0.25491 0.15274 1.30376 1.32858 1.36671 1.42896 1.66100 2.41977 2.44337 3.03952 3.27006 3.39310 3.47843 3.56483 3.87576 3.94818 4.06108 4.10914 4.14153 4.39709 4.46145 4.69839 4.75231 4.82809 4.92206 4.97836 5.03293 5.05944 5.08635 5.19699 5.23084 5.47043 5.51741 5.71498 5.74453 5.94083 6.18482 6.99831 7.49628 7.75427 7.94411 9.15161 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022272 B = 0.006881 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.908934 B = 4068.210478 C = 4548.633742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.100 4.100 3 C -0.132 4.132 4 C 0.277 3.723 5 H 0.080 0.920 6 N -0.745 5.745 7 C -0.212 4.212 8 H 0.085 0.915 9 C -0.045 4.045 10 N -0.970 5.970 11 Si 0.928 3.072 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.277 1.277 15 C 0.148 3.852 16 N -0.291 5.291 17 N -0.349 5.349 18 C 0.178 3.822 19 C -0.109 4.109 20 C -0.058 4.058 21 C -0.122 4.122 22 C 0.041 3.959 23 N -0.387 5.387 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.364 0.636 32 H 0.258 0.742 33 H 0.171 0.829 34 H 0.194 0.806 35 H 0.202 0.798 36 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.144 -7.660 3.947 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.122 4.122 3 C -0.190 4.190 4 C 0.166 3.834 5 H 0.097 0.903 6 N -0.387 5.387 7 C -0.342 4.342 8 H 0.103 0.897 9 C -0.238 4.238 10 N -0.621 5.621 11 Si 0.758 3.242 12 H -0.207 1.207 13 H -0.219 1.219 14 H -0.203 1.203 15 C -0.117 4.117 16 N -0.129 5.129 17 N -0.194 5.194 18 C -0.071 4.071 19 C -0.130 4.130 20 C -0.082 4.082 21 C -0.142 4.142 22 C -0.081 4.081 23 N -0.066 5.066 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.197 0.803 32 H 0.067 0.933 33 H 0.189 0.811 34 H 0.212 0.788 35 H 0.219 0.781 36 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -21.090 -8.172 2.892 22.802 hybrid contribution 0.888 -0.218 0.186 0.933 sum -20.202 -8.390 3.078 22.091 Atomic orbital electron populations 1.21731 0.93533 1.00343 1.03313 1.21622 0.96236 0.97063 0.97287 1.21718 1.01930 0.94183 1.01124 1.18744 0.83323 0.82850 0.98450 0.90266 1.42815 1.01165 1.20119 1.74637 1.18982 0.89186 0.95396 1.30640 0.89724 1.25114 0.97218 0.99124 1.02329 1.69790 1.07103 1.31557 1.53616 0.85819 0.78541 0.81311 0.78543 1.20674 1.21901 1.20269 1.25335 0.92181 0.99702 0.94490 1.74017 1.21476 0.96190 1.21234 1.74790 1.08894 1.18753 1.16989 1.23039 1.01073 0.84155 0.98854 1.20674 0.93659 1.00811 0.97865 1.21794 0.97357 0.95199 0.93849 1.21589 0.97746 0.94142 1.00764 1.22459 0.92584 1.02368 0.90657 1.43812 1.24851 1.10546 1.27429 0.90836 0.91130 0.94974 0.93215 0.93126 0.92086 0.92726 0.80269 0.93310 0.81112 0.78842 0.78083 0.79675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.95 71.98 0.64 -2.80 16 2 C -0.10 -3.48 2.68 -10.79 -0.03 -3.51 16 3 C -0.13 -4.68 8.26 71.98 0.59 -4.08 16 4 C 0.28 10.80 2.50 44.25 0.11 10.91 16 5 H 0.08 2.86 7.65 -2.39 -0.02 2.84 16 6 N -0.74 -36.29 4.80 -326.50 -1.57 -37.86 16 7 C -0.21 -11.58 8.05 84.03 0.68 -10.90 16 8 H 0.08 4.78 7.62 -2.91 -0.02 4.76 16 9 C -0.05 -2.66 5.50 84.86 0.47 -2.19 16 10 N -0.97 -60.80 13.97 21.65 0.30 -60.50 16 11 Si 0.93 48.45 27.73 68.60 1.90 50.36 16 12 H -0.28 -14.46 7.11 99.48 0.71 -13.75 16 13 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 14 H -0.28 -14.42 6.52 99.48 0.65 -13.78 16 15 C 0.15 5.70 5.66 137.72 0.78 6.48 16 16 N -0.29 -12.89 11.89 -49.68 -0.59 -13.48 16 17 N -0.35 -14.23 12.31 -55.40 -0.68 -14.91 16 18 C 0.18 5.63 7.92 134.07 1.06 6.69 16 19 C -0.11 -2.11 10.11 22.39 0.23 -1.88 16 20 C -0.06 -0.61 10.07 22.32 0.22 -0.39 16 21 C -0.12 -1.31 9.98 22.08 0.22 -1.09 16 22 C 0.04 0.79 10.80 83.23 0.90 1.69 16 23 N -0.39 -11.74 2.95 -342.88 -1.01 -12.75 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.03 0.89 7.22 -2.39 -0.02 0.87 16 27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 2.23 6.01 -2.38 -0.01 2.21 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.36 18.93 5.41 -92.71 -0.50 18.43 16 32 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 33 H 0.17 2.54 8.06 -2.92 -0.02 2.51 16 34 H 0.19 0.23 8.06 -2.91 -0.02 0.21 16 35 H 0.20 0.30 8.06 -2.91 -0.02 0.28 16 36 H 0.19 2.78 7.76 -2.91 -0.02 2.76 16 Total: -1.00 -78.57 299.73 4.76 -73.81 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.53 Total: 16.40 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 5.88 Total: -1.08 kcal Atomic # 7 Polarization: -135.95 SS G_CDS: -3.55 Total: -139.50 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 1.90 Total: 50.36 kcal Total: -78.57 4.76 -73.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330696804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.100 kcal (2) G-P(sol) polarization free energy of solvation -78.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds