Wall clock time and date at job start Mon Mar 30 2020 04:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46805 * 125.20376 * 2 1 4 4 N 1.48065 * 106.14574 * 197.56165 * 3 2 1 5 5 C 1.46903 * 110.99680 * 214.01434 * 4 3 2 6 6 C 1.50699 * 109.47045 * 183.98290 * 5 4 3 7 7 C 1.38636 * 119.74984 * 90.00434 * 6 5 4 8 8 C 1.37613 * 120.24993 * 179.97438 * 7 6 5 9 9 C 1.40711 * 119.74614 * 0.26968 * 8 7 6 10 10 C 1.41403 * 120.24606 * 179.70288 * 9 8 7 11 11 H 1.07996 * 119.99673 * 24.27398 * 10 9 8 12 12 C 1.39947 * 119.99783 * 204.27786 * 10 9 8 13 13 N 1.30821 * 120.00278 * 17.70402 * 12 10 9 14 14 Si 1.86794 * 119.99656 * 197.69699 * 12 10 9 15 15 H 1.48501 * 109.47529 * 60.00194 * 14 12 10 16 16 H 1.48506 * 109.47057 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47379 * 300.00118 * 14 12 10 18 18 C 1.40719 * 119.50996 * 359.43680 * 9 8 7 19 19 C 1.37615 * 119.74398 * 0.58788 * 18 9 8 20 20 C 1.48234 * 103.15854 * 332.95905 * 4 3 2 21 21 C 1.34851 * 125.21074 * 179.97438 * 2 1 3 22 22 O 1.21282 * 125.74321 * 359.63991 * 21 2 1 23 23 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47490 * 300.02016 * 1 2 3 25 25 H 1.09000 * 109.47173 * 60.02289 * 1 2 3 26 26 H 1.08995 * 110.12443 * 78.38624 * 3 2 1 27 27 H 1.09003 * 110.11128 * 316.72471 * 3 2 1 28 28 H 1.09006 * 109.46819 * 63.98499 * 5 4 3 29 29 H 1.08999 * 109.47346 * 303.98581 * 5 4 3 30 30 H 1.08001 * 119.87503 * 359.95339 * 7 6 5 31 31 H 1.08006 * 120.12661 * 180.02562 * 8 7 6 32 32 H 0.96999 * 120.00115 * 179.97438 * 13 12 10 33 33 H 1.07999 * 120.12422 * 180.29259 * 18 9 8 34 34 H 1.07998 * 119.87803 * 179.70785 * 19 18 9 35 35 H 1.09004 * 110.38208 * 145.17280 * 20 4 3 36 36 H 1.09001 * 110.38064 * 267.41738 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3113 1.1996 0.0000 4 7 3.6566 0.7543 -0.4291 5 6 4.7073 1.5286 0.2451 6 6 6.0553 1.1161 -0.2874 7 6 6.5934 1.7746 -1.3822 8 6 7.8238 1.4067 -1.8767 9 6 8.5336 0.3541 -1.2701 10 6 9.7960 -0.0368 -1.7733 11 1 10.3954 0.6661 -2.3327 12 6 10.2683 -1.3345 -1.5466 13 7 9.4378 -2.2797 -1.1883 14 14 12.0847 -1.7170 -1.7557 15 1 12.8780 -0.8782 -0.8217 16 1 12.3256 -3.1521 -1.4593 17 1 12.4944 -1.4251 -3.1530 18 6 7.9806 -0.3031 -0.1554 19 6 6.7483 0.0813 0.3217 20 6 3.6916 -0.6669 -0.0092 21 6 2.2425 -1.1018 0.0005 22 8 1.8467 -2.2482 0.0072 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5141 0.8898 25 1 -0.3633 0.5135 -0.8902 26 1 2.3591 1.6247 1.0025 27 1 1.9184 1.9354 -0.7017 28 1 4.6667 1.3388 1.3178 29 1 4.5523 2.5912 0.0581 30 1 6.0447 2.5792 -1.8491 31 1 8.2413 1.9215 -2.7295 32 1 9.7652 -3.1792 -1.0315 33 1 8.5189 -1.1092 0.3207 34 1 6.3197 -0.4248 1.1741 35 1 4.2610 -1.2602 -0.7246 36 1 4.1238 -0.7577 0.9873 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336036192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:20 Heat of formation + Delta-G solvation = 5.801779 kcal Electronic energy + Delta-G solvation = -18822.453841 eV Core-core repulsion = 15885.654843 eV Total energy + Delta-G solvation = -2936.798998 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49457 -37.87119 -36.78987 -34.61836 -33.46279 -30.62011 -29.39133 -28.56500 -27.36992 -26.07806 -23.88946 -22.04553 -21.02300 -20.03160 -19.70453 -17.32231 -16.71668 -16.51122 -15.51304 -15.33762 -14.71450 -14.41547 -14.10388 -13.87239 -13.67390 -13.34758 -13.21658 -12.65810 -12.43789 -12.38722 -12.25000 -11.96760 -11.60323 -11.38511 -11.08534 -10.98930 -10.59728 -10.39216 -9.82385 -9.63983 -9.41052 -9.19575 -9.08344 -8.32661 -7.48763 -7.34250 -6.78976 -4.38216 2.57486 2.66839 2.89962 3.04893 3.06491 3.07939 3.16697 3.90901 4.05929 4.41375 4.63693 4.94020 5.08385 5.22862 5.28025 5.37461 5.52238 5.55498 5.66130 5.74863 5.94986 6.08764 6.29055 6.32678 6.34553 6.56055 6.91969 7.04160 7.04846 7.10139 7.26283 7.34549 7.58213 7.83387 8.02402 8.07872 8.14169 8.27362 8.60849 8.86687 8.94529 10.15279 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034810 B = 0.004422 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.173442 B = 6330.305702 C = 6899.241672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.635 5.635 3 C 0.254 3.746 4 N -0.499 5.499 5 C 0.112 3.888 6 C -0.218 4.218 7 C -0.065 4.065 8 C -0.230 4.230 9 C 0.115 3.885 10 C -0.462 4.462 11 H 0.077 0.923 12 C 0.076 3.924 13 N -0.789 5.789 14 Si 0.908 3.092 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.166 4.166 19 C -0.091 4.091 20 C 0.010 3.990 21 C 0.518 3.482 22 O -0.528 6.528 23 H 0.081 0.919 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.282 0.718 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.482 5.688 3.778 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.371 5.371 3 C 0.041 3.959 4 N -0.225 5.225 5 C -0.015 4.015 6 C -0.220 4.220 7 C -0.084 4.084 8 C -0.249 4.249 9 C 0.112 3.888 10 C -0.491 4.491 11 H 0.096 0.904 12 C -0.142 4.142 13 N -0.414 5.414 14 Si 0.732 3.268 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.190 1.190 18 C -0.186 4.186 19 C -0.110 4.110 20 C -0.121 4.121 21 C 0.306 3.694 22 O -0.404 6.404 23 H 0.100 0.900 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.101 0.899 35 H 0.140 0.860 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.721 4.893 3.256 12.227 hybrid contribution 0.653 -0.277 0.689 0.989 sum -10.068 4.616 3.946 11.758 Atomic orbital electron populations 1.21482 0.77591 1.03622 1.01413 1.48502 1.06607 1.07762 1.74270 1.22912 0.86304 0.87276 0.99449 1.65932 1.00925 1.01957 1.53642 1.21033 0.89380 0.96715 0.94339 1.18693 0.95801 1.04175 1.03309 1.20312 0.95114 0.97949 0.95028 1.20961 0.96610 1.04593 1.02751 1.17631 0.91898 0.89764 0.89482 1.19602 1.01982 0.96849 1.30704 0.90446 1.25919 0.99685 0.95948 0.92643 1.69812 1.36109 1.02229 1.33283 0.86374 0.82590 0.77897 0.79914 1.18810 1.20310 1.18982 1.21274 0.96191 1.03051 0.98069 1.20507 0.95819 0.96205 0.98502 1.23082 0.93779 0.91933 1.03285 1.21293 0.89307 0.84566 0.74241 1.90712 1.79793 1.19526 1.50352 0.89996 0.92169 0.91957 0.93329 0.89095 0.94736 0.90681 0.89396 0.89059 0.90721 0.86519 0.89922 0.86036 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 11.22 59.84 0.67 1.64 16 2 N -0.63 -8.31 3.37 -183.93 -0.62 -8.93 16 3 C 0.25 3.01 7.25 -61.70 -0.45 2.57 16 4 N -0.50 -7.64 5.52 -238.68 -1.32 -8.96 16 5 C 0.11 1.75 4.76 -4.97 -0.02 1.72 16 6 C -0.22 -4.40 5.13 -104.33 -0.54 -4.93 16 7 C -0.07 -1.39 9.67 -39.66 -0.38 -1.77 16 8 C -0.23 -5.49 9.80 -38.88 -0.38 -5.87 16 9 C 0.11 2.99 5.57 -106.82 -0.60 2.40 16 10 C -0.46 -12.07 9.05 -37.74 -0.34 -12.42 16 11 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 12 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 13 N -0.79 -20.21 10.95 55.55 0.61 -19.60 16 14 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 15 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 16 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 C -0.17 -4.19 8.70 -38.87 -0.34 -4.52 16 19 C -0.09 -2.00 8.90 -39.66 -0.35 -2.36 16 20 C 0.01 0.16 5.62 -3.95 -0.02 0.14 16 21 C 0.52 8.53 8.19 -10.66 -0.09 8.44 16 22 O -0.53 -10.34 17.50 5.56 0.10 -10.25 16 23 H 0.08 0.86 7.65 -51.93 -0.40 0.46 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.51 7.79 -51.93 -0.40 0.10 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.03 0.50 7.77 -51.93 -0.40 0.10 16 29 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 32 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 33 H 0.12 3.06 6.16 -52.49 -0.32 2.73 16 34 H 0.08 1.64 7.45 -52.49 -0.39 1.25 16 35 H 0.12 2.24 8.14 -51.93 -0.42 1.82 16 36 H 0.09 1.34 6.94 -51.93 -0.36 0.98 16 LS Contribution 304.01 15.07 4.58 4.58 Total: -1.00 -29.11 304.01 -9.39 -38.51 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.79 Total: 4.41 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.93 Total: -13.16 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -1.33 Total: -37.49 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.10 Total: -10.25 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.11 -9.39 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336036192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.308 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds