Wall clock time and date at job start Mon Mar 30 2020 04:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46805 * 125.20376 * 2 1 4 4 N 1.48065 * 106.14574 * 197.56165 * 3 2 1 5 5 C 1.46903 * 110.99680 * 214.01434 * 4 3 2 6 6 C 1.50699 * 109.47045 * 183.98290 * 5 4 3 7 7 C 1.38636 * 119.74984 * 90.00434 * 6 5 4 8 8 C 1.37613 * 120.24993 * 179.97438 * 7 6 5 9 9 C 1.40711 * 119.74614 * 0.26968 * 8 7 6 10 10 C 1.41403 * 120.24606 * 179.70288 * 9 8 7 11 11 H 1.07996 * 119.99673 * 24.27398 * 10 9 8 12 12 C 1.39947 * 119.99783 * 204.27786 * 10 9 8 13 13 N 1.30821 * 120.00278 * 17.70402 * 12 10 9 14 14 Si 1.86794 * 119.99656 * 197.69699 * 12 10 9 15 15 H 1.48501 * 109.47529 * 60.00194 * 14 12 10 16 16 H 1.48506 * 109.47057 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47379 * 300.00118 * 14 12 10 18 18 C 1.40719 * 119.50996 * 359.43680 * 9 8 7 19 19 C 1.37615 * 119.74398 * 0.58788 * 18 9 8 20 20 C 1.48234 * 103.15854 * 332.95905 * 4 3 2 21 21 C 1.34851 * 125.21074 * 179.97438 * 2 1 3 22 22 O 1.21282 * 125.74321 * 359.63991 * 21 2 1 23 23 H 1.09005 * 109.47031 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47490 * 300.02016 * 1 2 3 25 25 H 1.09000 * 109.47173 * 60.02289 * 1 2 3 26 26 H 1.08995 * 110.12443 * 78.38624 * 3 2 1 27 27 H 1.09003 * 110.11128 * 316.72471 * 3 2 1 28 28 H 1.09006 * 109.46819 * 63.98499 * 5 4 3 29 29 H 1.08999 * 109.47346 * 303.98581 * 5 4 3 30 30 H 1.08001 * 119.87503 * 359.95339 * 7 6 5 31 31 H 1.08006 * 120.12661 * 180.02562 * 8 7 6 32 32 H 0.96999 * 120.00115 * 179.97438 * 13 12 10 33 33 H 1.07999 * 120.12422 * 180.29259 * 18 9 8 34 34 H 1.07998 * 119.87803 * 179.70785 * 19 18 9 35 35 H 1.09004 * 110.38208 * 145.17280 * 20 4 3 36 36 H 1.09001 * 110.38064 * 267.41738 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3113 1.1996 0.0000 4 7 3.6566 0.7543 -0.4291 5 6 4.7073 1.5286 0.2451 6 6 6.0553 1.1161 -0.2874 7 6 6.5934 1.7746 -1.3822 8 6 7.8238 1.4067 -1.8767 9 6 8.5336 0.3541 -1.2701 10 6 9.7960 -0.0368 -1.7733 11 1 10.3954 0.6661 -2.3327 12 6 10.2683 -1.3345 -1.5466 13 7 9.4378 -2.2797 -1.1883 14 14 12.0847 -1.7170 -1.7557 15 1 12.8780 -0.8782 -0.8217 16 1 12.3256 -3.1521 -1.4593 17 1 12.4944 -1.4251 -3.1530 18 6 7.9806 -0.3031 -0.1554 19 6 6.7483 0.0813 0.3217 20 6 3.6916 -0.6669 -0.0092 21 6 2.2425 -1.1018 0.0005 22 8 1.8467 -2.2482 0.0072 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5141 0.8898 25 1 -0.3633 0.5135 -0.8902 26 1 2.3591 1.6247 1.0025 27 1 1.9184 1.9354 -0.7017 28 1 4.6667 1.3388 1.3178 29 1 4.5523 2.5912 0.0581 30 1 6.0447 2.5792 -1.8491 31 1 8.2413 1.9215 -2.7295 32 1 9.7652 -3.1792 -1.0315 33 1 8.5189 -1.1092 0.3207 34 1 6.3197 -0.4248 1.1741 35 1 4.2610 -1.2602 -0.7246 36 1 4.1238 -0.7577 0.9873 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336036192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:19 Heat of formation + Delta-G solvation = -12.900460 kcal Electronic energy + Delta-G solvation = -18823.264831 eV Core-core repulsion = 15885.654843 eV Total energy + Delta-G solvation = -2937.609988 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67924 -39.52304 -38.18396 -36.03675 -35.01160 -32.20246 -31.16390 -29.95334 -28.53612 -27.42895 -25.34492 -23.38148 -22.76677 -21.59118 -20.98196 -19.18675 -17.85155 -17.66449 -17.16447 -16.61158 -16.14264 -15.83910 -15.64301 -15.19364 -14.98204 -14.71802 -14.54554 -14.15740 -13.80318 -13.69351 -13.37391 -13.32540 -13.20130 -12.87695 -12.75458 -12.56256 -12.28060 -12.01885 -11.37696 -11.23499 -11.08014 -10.99573 -10.22309 -9.44106 -9.28698 -9.14942 -8.61942 -6.31309 0.96328 1.21290 1.32088 1.37891 1.48691 1.52897 1.91172 2.21142 2.63624 2.99733 3.26539 3.79129 3.91027 4.12657 4.24433 4.34388 4.36977 4.46127 4.60390 4.64222 4.66541 4.70302 4.81440 4.83883 5.08293 5.17788 5.24539 5.36185 5.46226 5.51431 5.75180 5.88393 5.96859 6.06092 6.14453 6.29280 6.44296 6.74647 6.95544 6.97620 7.08324 8.34381 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034810 B = 0.004422 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.173442 B = 6330.305702 C = 6899.241672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.627 5.627 3 C 0.254 3.746 4 N -0.513 5.513 5 C 0.117 3.883 6 C -0.200 4.200 7 C -0.068 4.068 8 C -0.247 4.247 9 C 0.080 3.920 10 C -0.505 4.505 11 H 0.074 0.926 12 C 0.036 3.964 13 N -0.826 5.826 14 Si 0.980 3.020 15 H -0.260 1.260 16 H -0.269 1.269 17 H -0.260 1.260 18 C -0.193 4.193 19 C -0.094 4.094 20 C 0.012 3.988 21 C 0.511 3.489 22 O -0.572 6.572 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.287 0.713 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.330 7.798 4.415 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.361 5.361 3 C 0.042 3.958 4 N -0.239 5.239 5 C -0.010 4.010 6 C -0.201 4.201 7 C -0.087 4.087 8 C -0.266 4.266 9 C 0.078 3.922 10 C -0.534 4.534 11 H 0.092 0.908 12 C -0.179 4.179 13 N -0.453 5.453 14 Si 0.801 3.199 15 H -0.184 1.184 16 H -0.193 1.193 17 H -0.184 1.184 18 C -0.213 4.213 19 C -0.113 4.113 20 C -0.119 4.119 21 C 0.299 3.701 22 O -0.451 6.451 23 H 0.085 0.915 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.137 0.863 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.604 7.061 3.892 14.962 hybrid contribution 0.995 -0.794 0.525 1.377 sum -11.609 6.266 4.417 13.913 Atomic orbital electron populations 1.21759 0.75298 1.03549 1.03968 1.48656 1.08039 1.07067 1.72363 1.23164 0.83928 0.86801 1.01862 1.65774 1.02803 1.01052 1.54229 1.21019 0.86670 0.98225 0.95070 1.19205 0.97554 1.01811 1.01559 1.20690 0.94207 0.98604 0.95156 1.21185 0.97853 1.04448 1.03149 1.17969 0.92753 0.91132 0.90379 1.19844 1.03029 0.97874 1.32678 0.90819 1.26731 1.04039 0.95239 0.91895 1.69881 1.38034 1.02674 1.34666 0.85292 0.76752 0.77959 0.79946 1.18396 1.19344 1.18428 1.21242 0.97815 1.03468 0.98771 1.20773 0.94803 0.96665 0.99043 1.22920 0.93755 0.92610 1.02605 1.21278 0.89739 0.84727 0.74340 1.90684 1.80370 1.21306 1.52720 0.91470 0.89196 0.89712 0.90417 0.86325 0.92896 0.87554 0.86106 0.88859 0.90294 0.88679 0.88015 0.89241 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.48 11.22 127.77 1.43 2.91 16 2 N -0.63 -14.30 3.37 -854.16 -2.88 -17.18 16 3 C 0.25 4.76 7.25 170.24 1.23 5.99 16 4 N -0.51 -13.89 5.52 -909.03 -5.02 -18.92 16 5 C 0.12 3.13 4.76 85.56 0.41 3.54 16 6 C -0.20 -7.64 5.13 -19.67 -0.10 -7.74 16 7 C -0.07 -2.78 9.67 22.22 0.21 -2.57 16 8 C -0.25 -11.95 9.80 22.73 0.22 -11.73 16 9 C 0.08 4.33 5.57 -21.29 -0.12 4.22 16 10 C -0.50 -27.67 9.05 23.46 0.21 -27.46 16 11 H 0.07 3.90 7.91 -2.91 -0.02 3.87 16 12 C 0.04 1.83 5.14 85.26 0.44 2.27 16 13 N -0.83 -44.34 10.95 21.83 0.24 -44.10 16 14 Si 0.98 38.93 29.59 68.60 2.03 40.96 16 15 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 16 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 17 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 18 C -0.19 -10.11 8.70 22.73 0.20 -9.91 16 19 C -0.09 -4.11 8.90 22.22 0.20 -3.92 16 20 C 0.01 0.38 5.62 85.49 0.48 0.86 16 21 C 0.51 16.24 8.19 87.84 0.72 16.96 16 22 O -0.57 -22.54 17.50 -3.04 -0.05 -22.59 16 23 H 0.07 1.28 7.65 -2.38 -0.02 1.26 16 24 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.11 7.79 -2.39 -0.02 1.09 16 27 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.05 1.28 7.77 -2.38 -0.02 1.26 16 29 H 0.11 2.29 8.08 -2.39 -0.02 2.27 16 30 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.09 4.33 8.06 -2.91 -0.02 4.30 16 32 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 33 H 0.10 5.29 6.16 -2.91 -0.02 5.27 16 34 H 0.10 3.97 7.45 -2.91 -0.02 3.94 16 35 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 36 H 0.09 2.70 6.94 -2.39 -0.02 2.68 16 Total: -1.00 -67.21 304.01 0.93 -66.28 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 1.07 Total: 22.11 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 5.54 Total: -26.56 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -7.66 Total: -80.20 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -67.21 0.93 -66.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336036192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.379 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds