Wall clock time and date at job start Mon Mar 30 2020 04:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36784 * 120.00057 * 2 1 4 4 H 1.08002 * 120.00216 * 206.24638 * 3 2 1 5 5 C 1.39105 * 119.99888 * 26.25569 * 3 2 1 6 6 N 1.31331 * 120.00023 * 218.50081 * 5 3 2 7 7 Si 1.86807 * 120.00341 * 38.49869 * 5 3 2 8 8 H 1.48497 * 109.46886 * 93.87208 * 7 5 3 9 9 H 1.48493 * 109.47065 * 213.87321 * 7 5 3 10 10 H 1.48501 * 109.46797 * 333.87497 * 7 5 3 11 11 C 1.34780 * 120.00114 * 180.02562 * 2 1 3 12 12 O 1.21561 * 119.99783 * 184.14635 * 11 2 1 13 13 C 1.48002 * 119.99844 * 4.15104 * 11 2 1 14 14 C 1.39428 * 119.81567 * 176.02482 * 13 11 2 15 15 C 1.38299 * 118.73101 * 180.02562 * 14 13 11 16 16 C 1.39204 * 118.98786 * 359.90431 * 15 14 13 17 17 C 1.38007 * 119.34284 * 359.93628 * 16 15 14 18 18 N 1.32364 * 120.23414 * 0.22711 * 17 16 15 19 19 C 1.50750 * 122.29096 * 180.39886 * 17 16 15 20 20 C 1.52713 * 110.57317 * 342.11437 * 19 17 16 21 21 C 1.53314 * 108.43956 * 51.35177 * 20 19 17 22 22 C 1.50533 * 117.88902 * 179.72265 * 16 15 14 23 23 H 1.09002 * 109.46942 * 238.30793 * 1 2 3 24 24 H 1.09004 * 109.46743 * 358.30154 * 1 2 3 25 25 H 1.08993 * 109.47250 * 118.30605 * 1 2 3 26 26 H 0.96999 * 120.00109 * 180.02562 * 6 5 3 27 27 H 1.07998 * 120.62891 * 0.10082 * 14 13 11 28 28 H 1.08003 * 120.50619 * 180.17631 * 15 14 13 29 29 H 1.08997 * 109.25760 * 221.82689 * 19 17 16 30 30 H 1.09004 * 109.22881 * 102.37628 * 19 17 16 31 31 H 1.09004 * 109.63964 * 291.67216 * 20 19 17 32 32 H 1.09001 * 109.64535 * 171.04265 * 20 19 17 33 33 H 1.09001 * 109.68427 * 170.29194 * 21 20 19 34 34 H 1.09000 * 109.68414 * 49.73205 * 21 20 19 35 35 H 1.08999 * 109.26101 * 282.95731 * 22 16 15 36 36 H 1.09001 * 109.25397 * 42.40218 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1846 0.0000 4 1 3.1454 1.2328 -0.4136 5 6 1.5610 2.3271 0.5329 6 7 1.7433 3.4911 -0.0473 7 14 0.5121 2.2059 2.0740 8 1 1.3518 2.4824 3.2672 9 1 -0.5891 3.1995 2.0026 10 1 -0.0599 0.8394 2.1771 11 6 2.1389 -1.1672 -0.0005 12 8 3.3521 -1.1686 0.0756 13 6 1.4018 -2.4472 -0.0939 14 6 2.1055 -3.6479 -0.1778 15 6 1.3942 -4.8308 -0.2647 16 6 0.0030 -4.7830 -0.2634 17 6 -0.6316 -3.5607 -0.1744 18 7 0.0774 -2.4457 -0.0957 19 6 -2.1336 -3.4323 -0.1584 20 6 -2.7868 -4.7081 -0.6854 21 6 -2.1984 -5.9033 0.0733 22 6 -0.7464 -6.0845 -0.3654 23 1 -0.3633 -0.5399 0.8744 24 1 -0.3633 1.0273 0.0305 25 1 -0.3633 -0.4873 -0.9047 26 1 1.3337 4.2878 0.3245 27 1 3.1855 -3.6542 -0.1739 28 1 1.9102 -5.7774 -0.3282 29 1 -2.4292 -2.5914 -0.7857 30 1 -2.4677 -3.2531 0.8636 31 1 -2.5800 -4.8125 -1.7506 32 1 -3.8634 -4.6635 -0.5207 33 1 -2.7676 -6.8030 -0.1606 34 1 -2.2368 -5.7124 1.1458 35 1 -0.7236 -6.4326 -1.3981 36 1 -0.2675 -6.8261 0.2740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336406218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:50 Heat of formation + Delta-G solvation = 13.253586 kcal Electronic energy + Delta-G solvation = -19478.145148 eV Core-core repulsion = 16541.669284 eV Total energy + Delta-G solvation = -2936.475863 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47759 -38.34711 -36.19533 -34.81630 -33.16550 -32.12807 -30.30962 -29.59236 -26.32500 -25.65865 -24.05359 -22.99311 -22.41096 -20.29120 -19.01413 -17.13234 -16.64857 -16.19979 -15.62599 -15.38413 -14.58811 -14.30448 -14.07287 -13.92212 -13.84139 -13.32745 -13.19573 -12.74480 -12.50289 -12.27641 -12.16651 -12.04314 -11.64399 -11.47359 -11.03450 -10.88311 -10.74341 -10.63666 -10.50584 -9.83804 -9.41621 -9.14618 -8.96668 -8.42877 -8.38041 -7.84128 -6.66022 -3.84415 1.14203 1.55396 3.08987 3.22349 3.29821 3.56014 4.10075 4.26519 4.38317 4.54175 4.63215 4.76678 4.80503 4.99192 5.00504 5.15290 5.40011 5.41499 5.45862 5.49665 5.66318 5.75531 5.85834 5.88529 5.90193 5.97103 6.14213 6.18093 6.32199 6.44661 6.51353 6.56380 6.75342 6.99996 7.37651 8.18311 8.24185 8.46584 8.92745 9.27379 9.83486 10.43590 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.006215 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.771488 B = 4503.825474 C = 5194.609173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.420 5.420 3 C -0.325 4.325 4 H 0.112 0.888 5 C 0.073 3.927 6 N -0.820 5.820 7 Si 0.853 3.147 8 H -0.277 1.277 9 H -0.280 1.280 10 H -0.250 1.250 11 C 0.472 3.528 12 O -0.580 6.580 13 C 0.117 3.883 14 C -0.131 4.131 15 C -0.086 4.086 16 C -0.138 4.138 17 C 0.126 3.874 18 N -0.468 5.468 19 C -0.067 4.067 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.072 4.072 23 H 0.061 0.939 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.278 0.722 27 H 0.142 0.858 28 H 0.131 0.869 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 -16.674 -0.144 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.136 5.136 3 C -0.452 4.452 4 H 0.130 0.870 5 C -0.138 4.138 6 N -0.453 5.453 7 Si 0.676 3.324 8 H -0.203 1.203 9 H -0.206 1.206 10 H -0.173 1.173 11 C 0.262 3.738 12 O -0.466 6.466 13 C -0.023 4.023 14 C -0.152 4.152 15 C -0.111 4.111 16 C -0.140 4.140 17 C -0.012 4.012 18 N -0.181 5.181 19 C -0.105 4.105 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.110 4.110 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.160 0.840 28 H 0.149 0.851 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.690 -15.588 -0.085 18.901 hybrid contribution 0.017 -0.606 0.809 1.011 sum -10.673 -16.194 0.724 19.408 Atomic orbital electron populations 1.22143 0.81204 0.99920 1.01637 1.43672 1.05509 1.05231 1.59214 1.19163 1.03606 0.82709 1.39682 0.87032 1.25300 0.96359 0.94530 0.97641 1.69987 1.40033 1.00252 1.35011 0.87367 0.80101 0.79758 0.85126 1.20298 1.20568 1.17343 1.17509 0.86956 0.82177 0.87169 1.90620 1.12876 1.85862 1.57206 1.21598 0.89105 0.95332 0.96309 1.22009 1.02002 0.91824 0.99409 1.21466 0.93307 0.98355 0.98016 1.20464 0.94224 0.95811 1.03533 1.21096 0.96148 0.87855 0.96062 1.68151 1.07780 1.29781 1.12352 1.20336 0.88775 0.98761 1.02640 1.21558 0.99641 0.94157 1.00228 1.21564 0.95285 0.98388 1.00561 1.20363 0.94997 0.93813 1.01790 0.92062 0.92705 0.92153 0.91136 0.83983 0.85123 0.89702 0.90109 0.91526 0.91113 0.91472 0.91566 0.90774 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.12 6.88 59.85 0.41 2.53 16 2 N -0.42 -11.07 2.73 -123.23 -0.34 -11.40 16 3 C -0.32 -9.42 9.39 -15.02 -0.14 -9.56 16 4 H 0.11 3.58 7.72 -52.49 -0.40 3.18 16 5 C 0.07 2.00 4.78 -17.44 -0.08 1.92 16 6 N -0.82 -23.01 13.95 55.50 0.77 -22.24 16 7 Si 0.85 20.14 26.39 -169.99 -4.49 15.66 16 8 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.25 -5.71 5.24 56.52 0.30 -5.41 16 11 C 0.47 12.23 7.61 -12.26 -0.09 12.14 16 12 O -0.58 -16.69 16.10 5.31 0.09 -16.60 16 13 C 0.12 2.49 6.68 -83.16 -0.56 1.93 16 14 C -0.13 -2.37 9.64 -39.12 -0.38 -2.75 16 15 C -0.09 -1.22 9.74 -39.20 -0.38 -1.60 16 16 C -0.14 -1.87 5.75 -104.43 -0.60 -2.47 16 17 C 0.13 1.94 6.62 -82.42 -0.55 1.39 16 18 N -0.47 -8.96 5.80 -6.09 -0.04 -9.00 16 19 C -0.07 -0.80 5.91 -28.01 -0.17 -0.97 16 20 C -0.12 -1.05 5.97 -26.72 -0.16 -1.21 16 21 C -0.12 -1.01 5.98 -26.69 -0.16 -1.17 16 22 C -0.07 -0.69 5.68 -28.09 -0.16 -0.85 16 23 H 0.06 1.32 6.15 -51.93 -0.32 1.00 16 24 H 0.05 1.22 5.09 -51.93 -0.26 0.96 16 25 H 0.06 1.26 7.03 -51.93 -0.37 0.89 16 26 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.14 2.54 7.66 -52.49 -0.40 2.14 16 28 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 290.11 15.07 4.37 4.37 Total: -1.00 -32.17 290.11 -7.43 -39.60 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.80 Total: 0.29 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -3.01 Total: -0.68 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.40 Total: -42.63 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.09 Total: -16.60 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.49 Total: 15.66 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.17 -7.43 -39.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336406218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.855 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds