Wall clock time and date at job start Mon Mar 30 2020 04:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36784 * 120.00057 * 2 1 4 4 H 1.08002 * 120.00216 * 206.24638 * 3 2 1 5 5 C 1.39105 * 119.99888 * 26.25569 * 3 2 1 6 6 N 1.31331 * 120.00023 * 218.50081 * 5 3 2 7 7 Si 1.86807 * 120.00341 * 38.49869 * 5 3 2 8 8 H 1.48497 * 109.46886 * 93.87208 * 7 5 3 9 9 H 1.48493 * 109.47065 * 213.87321 * 7 5 3 10 10 H 1.48501 * 109.46797 * 333.87497 * 7 5 3 11 11 C 1.34780 * 120.00114 * 180.02562 * 2 1 3 12 12 O 1.21561 * 119.99783 * 184.14635 * 11 2 1 13 13 C 1.48002 * 119.99844 * 4.15104 * 11 2 1 14 14 C 1.39428 * 119.81567 * 176.02482 * 13 11 2 15 15 C 1.38299 * 118.73101 * 180.02562 * 14 13 11 16 16 C 1.39204 * 118.98786 * 359.90431 * 15 14 13 17 17 C 1.38007 * 119.34284 * 359.93628 * 16 15 14 18 18 N 1.32364 * 120.23414 * 0.22711 * 17 16 15 19 19 C 1.50750 * 122.29096 * 180.39886 * 17 16 15 20 20 C 1.52713 * 110.57317 * 342.11437 * 19 17 16 21 21 C 1.53314 * 108.43956 * 51.35177 * 20 19 17 22 22 C 1.50533 * 117.88902 * 179.72265 * 16 15 14 23 23 H 1.09002 * 109.46942 * 238.30793 * 1 2 3 24 24 H 1.09004 * 109.46743 * 358.30154 * 1 2 3 25 25 H 1.08993 * 109.47250 * 118.30605 * 1 2 3 26 26 H 0.96999 * 120.00109 * 180.02562 * 6 5 3 27 27 H 1.07998 * 120.62891 * 0.10082 * 14 13 11 28 28 H 1.08003 * 120.50619 * 180.17631 * 15 14 13 29 29 H 1.08997 * 109.25760 * 221.82689 * 19 17 16 30 30 H 1.09004 * 109.22881 * 102.37628 * 19 17 16 31 31 H 1.09004 * 109.63964 * 291.67216 * 20 19 17 32 32 H 1.09001 * 109.64535 * 171.04265 * 20 19 17 33 33 H 1.09001 * 109.68427 * 170.29194 * 21 20 19 34 34 H 1.09000 * 109.68414 * 49.73205 * 21 20 19 35 35 H 1.08999 * 109.26101 * 282.95731 * 22 16 15 36 36 H 1.09001 * 109.25397 * 42.40218 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1846 0.0000 4 1 3.1454 1.2328 -0.4136 5 6 1.5610 2.3271 0.5329 6 7 1.7433 3.4911 -0.0473 7 14 0.5121 2.2059 2.0740 8 1 1.3518 2.4824 3.2672 9 1 -0.5891 3.1995 2.0026 10 1 -0.0599 0.8394 2.1771 11 6 2.1389 -1.1672 -0.0005 12 8 3.3521 -1.1686 0.0756 13 6 1.4018 -2.4472 -0.0939 14 6 2.1055 -3.6479 -0.1778 15 6 1.3942 -4.8308 -0.2647 16 6 0.0030 -4.7830 -0.2634 17 6 -0.6316 -3.5607 -0.1744 18 7 0.0774 -2.4457 -0.0957 19 6 -2.1336 -3.4323 -0.1584 20 6 -2.7868 -4.7081 -0.6854 21 6 -2.1984 -5.9033 0.0733 22 6 -0.7464 -6.0845 -0.3654 23 1 -0.3633 -0.5399 0.8744 24 1 -0.3633 1.0273 0.0305 25 1 -0.3633 -0.4873 -0.9047 26 1 1.3337 4.2878 0.3245 27 1 3.1855 -3.6542 -0.1739 28 1 1.9102 -5.7774 -0.3282 29 1 -2.4292 -2.5914 -0.7857 30 1 -2.4677 -3.2531 0.8636 31 1 -2.5800 -4.8125 -1.7506 32 1 -3.8634 -4.6635 -0.5207 33 1 -2.7676 -6.8030 -0.1606 34 1 -2.2368 -5.7124 1.1458 35 1 -0.7236 -6.4326 -1.3981 36 1 -0.2675 -6.8261 0.2740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336406218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:49 Heat of formation + Delta-G solvation = -7.613528 kcal Electronic energy + Delta-G solvation = -19479.050014 eV Core-core repulsion = 16541.669284 eV Total energy + Delta-G solvation = -2937.380729 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82648 -40.12373 -37.28137 -36.84349 -34.54789 -34.00969 -31.54541 -30.60000 -28.22349 -27.44231 -25.37880 -24.18284 -23.47938 -21.67813 -20.30387 -19.18795 -18.30079 -17.67997 -17.26277 -16.60896 -16.26701 -15.97983 -15.34130 -15.23434 -14.70220 -14.68339 -14.54165 -14.41649 -13.97644 -13.88060 -13.78196 -13.34726 -13.08075 -12.73758 -12.57389 -12.52137 -11.75107 -11.72653 -11.61137 -11.48560 -11.12632 -10.79774 -10.60925 -10.06667 -9.93816 -9.67534 -8.75387 -6.05316 -0.24073 0.29472 1.19943 1.30505 1.42208 1.87542 2.12124 2.52586 2.75053 3.01463 3.21386 3.68725 3.81109 3.92811 4.01348 4.11120 4.21284 4.34919 4.49253 4.51129 4.64561 4.72220 4.78802 4.87469 4.92672 4.99667 5.00325 5.10804 5.13252 5.26933 5.30265 5.37722 5.44502 5.52498 5.76764 5.94627 6.37329 6.77776 6.96467 7.20392 7.80173 8.40349 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.006215 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.771488 B = 4503.825474 C = 5194.609173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.437 5.437 3 C -0.367 4.367 4 H 0.054 0.946 5 C 0.040 3.960 6 N -0.861 5.861 7 Si 0.923 3.077 8 H -0.282 1.282 9 H -0.254 1.254 10 H -0.238 1.238 11 C 0.469 3.531 12 O -0.624 6.624 13 C 0.079 3.921 14 C -0.139 4.139 15 C -0.076 4.076 16 C -0.113 4.113 17 C 0.112 3.888 18 N -0.482 5.482 19 C -0.069 4.069 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.073 4.073 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.289 0.711 27 H 0.133 0.867 28 H 0.175 0.825 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.410 -20.510 0.645 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.153 5.153 3 C -0.494 4.494 4 H 0.072 0.928 5 C -0.169 4.169 6 N -0.494 5.494 7 Si 0.744 3.256 8 H -0.208 1.208 9 H -0.178 1.178 10 H -0.161 1.161 11 C 0.260 3.740 12 O -0.512 6.512 13 C -0.060 4.060 14 C -0.160 4.160 15 C -0.101 4.101 16 C -0.116 4.116 17 C -0.026 4.026 18 N -0.195 5.195 19 C -0.107 4.107 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.111 4.111 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.099 0.901 27 H 0.151 0.849 28 H 0.192 0.808 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.290 -19.411 0.693 24.114 hybrid contribution 1.108 0.304 0.461 1.238 sum -13.182 -19.106 1.154 23.241 Atomic orbital electron populations 1.22157 0.78897 0.99954 1.02688 1.43724 1.06855 1.04442 1.60317 1.18713 1.02580 0.85035 1.43032 0.92778 1.25955 0.97901 0.93525 0.99508 1.70011 1.41847 1.01203 1.36325 0.86288 0.78865 0.80854 0.79633 1.20845 1.17834 1.16149 1.18385 0.86884 0.83854 0.84920 1.90555 1.15128 1.87154 1.58365 1.20931 0.90296 0.93672 1.01099 1.22068 1.01865 0.92349 0.99754 1.21921 0.93742 0.98393 0.96057 1.21092 0.94300 0.97221 0.98939 1.21832 0.97758 0.87612 0.95378 1.67963 1.06762 1.32219 1.12569 1.20492 0.86306 1.00613 1.03246 1.21577 1.00710 0.92633 1.00180 1.21601 0.94571 0.99187 1.00279 1.20560 0.95460 0.91429 1.03626 0.90947 0.92951 0.91025 0.90095 0.84922 0.80789 0.90176 0.89434 0.91403 0.88930 0.88715 0.91790 0.88742 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.77 6.88 127.77 0.88 5.65 16 2 N -0.44 -24.21 2.73 -662.05 -1.81 -26.02 16 3 C -0.37 -22.88 9.39 84.13 0.79 -22.09 16 4 H 0.05 3.87 7.72 -2.91 -0.02 3.85 16 5 C 0.04 2.28 4.78 84.98 0.41 2.69 16 6 N -0.86 -50.36 13.95 21.69 0.30 -50.05 16 7 Si 0.92 42.38 26.39 68.60 1.81 44.19 16 8 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 9 H -0.25 -10.56 7.11 99.48 0.71 -9.86 16 10 H -0.24 -10.39 5.24 99.48 0.52 -9.87 16 11 C 0.47 25.72 7.61 86.83 0.66 26.39 16 12 O -0.62 -38.65 16.10 -3.91 -0.06 -38.72 16 13 C 0.08 3.41 6.68 41.93 0.28 3.69 16 14 C -0.14 -4.97 9.64 22.57 0.22 -4.75 16 15 C -0.08 -1.90 9.74 22.52 0.22 -1.68 16 16 C -0.11 -2.60 5.75 -19.74 -0.11 -2.71 16 17 C 0.11 3.15 6.62 42.44 0.28 3.43 16 18 N -0.48 -18.08 5.80 -173.17 -1.00 -19.08 16 19 C -0.07 -1.40 5.91 29.77 0.18 -1.22 16 20 C -0.11 -1.46 5.97 30.60 0.18 -1.28 16 21 C -0.12 -1.29 5.98 30.62 0.18 -1.11 16 22 C -0.07 -0.96 5.68 29.71 0.17 -0.79 16 23 H 0.07 3.07 6.15 -2.39 -0.01 3.06 16 24 H 0.05 2.34 5.09 -2.38 -0.01 2.33 16 25 H 0.07 3.01 7.03 -2.39 -0.02 2.99 16 26 H 0.29 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.13 4.89 7.66 -2.91 -0.02 4.87 16 28 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 0.89 8.10 -2.38 -0.02 0.87 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.10 0.94 8.13 -2.39 -0.02 0.92 16 Total: -1.00 -77.50 290.11 4.46 -73.04 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.90 Total: 10.44 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.33 Total: 6.21 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -2.51 Total: -95.16 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.06 Total: -38.72 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.81 Total: 44.19 kcal Total: -77.50 4.46 -73.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336406218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.423 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds