Wall clock time and date at job start Mon Mar 30 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47240 * 2 1 4 4 C 1.37095 * 120.00254 * 86.85556 * 3 2 1 5 5 H 1.07997 * 120.00681 * 210.28234 * 4 3 2 6 6 C 1.38950 * 119.99309 * 30.29157 * 4 3 2 7 7 N 1.31412 * 120.00672 * 40.41125 * 6 4 3 8 8 Si 1.86810 * 119.99824 * 220.41439 * 6 4 3 9 9 H 1.48493 * 109.47391 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47012 * 300.00136 * 8 6 4 11 11 H 1.48506 * 109.47089 * 59.99807 * 8 6 4 12 12 C 1.34779 * 119.99735 * 266.86667 * 3 2 1 13 13 O 1.21298 * 119.99410 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00601 * 359.97438 * 12 3 2 15 15 H 1.09007 * 115.54506 * 34.41927 * 14 12 3 16 16 C 1.53005 * 117.50047 * 248.75398 * 14 12 3 17 17 C 1.52998 * 117.50210 * 180.09367 * 14 12 3 18 18 H 1.09001 * 117.49706 * 359.97438 * 17 14 12 19 19 C 1.50704 * 117.49621 * 214.97962 * 17 14 12 20 20 C 1.38676 * 120.41580 * 120.00099 * 19 17 14 21 21 C 1.38631 * 118.41876 * 180.02562 * 20 19 17 22 22 C 1.38229 * 119.15989 * 359.97438 * 21 20 19 23 23 N 1.31851 * 120.76375 * 359.97438 * 22 21 20 24 24 C 1.31887 * 121.72728 * 359.70714 * 23 22 21 25 25 H 1.08999 * 109.47540 * 59.99708 * 1 2 3 26 26 H 1.09007 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46905 * 299.99484 * 1 2 3 28 28 H 1.09004 * 109.46905 * 240.00516 * 2 1 3 29 29 H 1.08999 * 109.47540 * 120.00292 * 2 1 3 30 30 H 0.96999 * 119.99369 * 5.87138 * 7 6 4 31 31 H 1.08994 * 117.49833 * 359.97438 * 16 14 12 32 32 H 1.09001 * 117.49623 * 144.99396 * 16 14 12 33 33 H 1.07997 * 120.79116 * 0.02562 * 20 19 17 34 34 H 1.08000 * 120.41849 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.61414 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.61884 * 180.30613 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1855 2.0492 1.1855 5 1 2.0614 3.1214 1.2234 6 6 2.5147 1.3467 2.3382 7 7 3.3837 0.3625 2.2824 8 14 1.7220 1.8014 3.9675 9 1 2.2384 0.9083 5.0356 10 1 2.0488 3.2111 4.3007 11 1 0.2488 1.6466 3.8615 12 6 2.3031 1.9952 -1.1655 13 8 2.7070 3.1390 -1.1655 14 6 2.1198 1.2610 -2.4686 15 1 1.2842 0.5616 -2.5006 16 6 3.3793 0.8933 -3.2557 17 6 2.4624 2.0118 -3.7569 18 1 2.8200 3.0371 -3.6619 19 6 1.6191 1.7275 -4.9732 20 6 0.9035 2.7457 -5.5849 21 6 0.1409 2.4378 -6.7009 22 6 0.1197 1.1355 -7.1637 23 7 0.8138 0.1928 -6.5571 24 6 1.5549 0.4505 -5.4971 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8586 0.1813 1.4563 31 1 4.3405 1.1828 -2.8311 32 1 3.3724 -0.0479 -3.8054 33 1 0.9395 3.7546 -5.2011 34 1 -0.4288 3.2059 -7.2028 35 1 -0.4723 0.8873 -8.0323 36 1 2.1137 -0.3468 -5.0298 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368851629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:04 Heat of formation + Delta-G solvation = 28.540889 kcal Electronic energy + Delta-G solvation = -19070.113891 eV Core-core repulsion = 16134.300934 eV Total energy + Delta-G solvation = -2935.812956 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40658 -38.93883 -36.49224 -34.95772 -32.45134 -32.05410 -30.76656 -29.51665 -25.60237 -24.34393 -23.62449 -22.97334 -22.00782 -20.74584 -18.78400 -17.52683 -17.23059 -16.50517 -15.99608 -15.14002 -14.81898 -14.39106 -14.01300 -13.91049 -13.73435 -13.50810 -13.07034 -13.01092 -12.38894 -12.06523 -11.77568 -11.61109 -11.36864 -11.14780 -10.90813 -10.81258 -10.42594 -10.24088 -10.12240 -10.01908 -9.71942 -9.47273 -8.89179 -8.80574 -8.36196 -7.79378 -6.74596 -3.87653 1.03115 1.23386 3.23463 3.34759 3.48406 3.54346 3.77627 4.14832 4.30326 4.37172 4.55675 4.77836 4.83613 4.92264 4.96162 5.03357 5.15135 5.31132 5.39871 5.49632 5.63174 5.74703 5.77648 5.91034 6.03006 6.05205 6.14465 6.21697 6.28295 6.37757 6.45887 6.64683 6.68973 6.86771 7.88934 7.91048 8.14941 8.59517 8.96278 9.39658 9.91943 10.48711 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036707 B = 0.004688 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.609853 B = 5971.430243 C = 6075.274901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.090 3.910 3 N -0.436 5.436 4 C -0.420 4.420 5 H 0.087 0.913 6 C 0.023 3.977 7 N -0.848 5.848 8 Si 1.057 2.943 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.471 3.529 13 O -0.582 6.582 14 C -0.153 4.153 15 H 0.111 0.889 16 C -0.150 4.150 17 C -0.098 4.098 18 H 0.126 0.874 19 C -0.089 4.089 20 C -0.070 4.070 21 C -0.170 4.170 22 C 0.083 3.917 23 N -0.483 5.483 24 C 0.094 3.906 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.277 0.723 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.413 -1.710 -13.078 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.034 4.034 3 N -0.155 5.155 4 C -0.546 4.546 5 H 0.105 0.895 6 C -0.188 4.188 7 N -0.479 5.479 8 Si 0.882 3.118 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.260 3.740 13 O -0.466 6.466 14 C -0.174 4.174 15 H 0.129 0.871 16 C -0.187 4.187 17 C -0.117 4.117 18 H 0.144 0.856 19 C -0.091 4.091 20 C -0.096 4.096 21 C -0.190 4.190 22 C -0.074 4.074 23 N -0.191 5.191 24 C -0.063 4.063 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.343 -2.471 -11.772 13.161 hybrid contribution 0.008 1.252 -1.291 1.799 sum -5.335 -1.219 -13.063 14.163 Atomic orbital electron populations 1.22084 0.97052 1.00533 1.02106 1.21558 0.93719 0.85591 1.02543 1.43545 1.55113 1.11770 1.05054 1.20090 1.54051 0.95199 0.85257 0.89537 1.26246 0.94339 0.95558 1.02650 1.70773 1.15742 1.31763 1.29670 0.83710 0.76607 0.76558 0.74890 1.20571 1.20802 1.20966 1.19279 0.82870 0.87916 0.83947 1.90506 1.50729 1.18622 1.86771 1.22437 1.00432 1.02703 0.91825 0.87088 1.23049 0.95068 0.98558 1.02027 1.20965 1.00915 0.99158 0.90642 0.85611 1.20266 0.97755 0.94619 0.96454 1.21499 0.94049 0.99839 0.94229 1.22126 1.00714 0.98362 0.97781 1.22715 0.96684 0.89169 0.98834 1.67689 1.06585 1.36283 1.08556 1.22704 0.95766 0.95485 0.92352 0.93650 0.92923 0.91850 0.92463 0.89396 0.91219 0.87789 0.88203 0.84629 0.84853 0.83001 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.17 37.16 0.38 -2.53 16 2 C 0.09 1.89 5.27 -4.04 -0.02 1.87 16 3 N -0.44 -10.87 2.44 -114.81 -0.28 -11.15 16 4 C -0.42 -11.67 8.80 -14.93 -0.13 -11.80 16 5 H 0.09 2.61 7.76 -52.49 -0.41 2.20 16 6 C 0.02 0.60 4.50 -17.47 -0.08 0.52 16 7 N -0.85 -23.08 12.22 55.50 0.68 -22.40 16 8 Si 1.06 23.27 30.06 -169.99 -5.11 18.16 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.47 11.41 7.41 -10.99 -0.08 11.33 16 13 O -0.58 -16.28 16.04 5.54 0.09 -16.19 16 14 C -0.15 -2.78 4.43 -91.77 -0.41 -3.19 16 15 H 0.11 1.87 6.80 -51.93 -0.35 1.52 16 16 C -0.15 -2.29 9.57 -26.69 -0.26 -2.55 16 17 C -0.10 -1.56 5.58 -91.73 -0.51 -2.07 16 18 H 0.13 2.20 7.67 -51.93 -0.40 1.80 16 19 C -0.09 -1.24 5.62 -104.48 -0.59 -1.83 16 20 C -0.07 -0.88 9.89 -39.27 -0.39 -1.26 16 21 C -0.17 -1.80 10.11 -39.44 -0.40 -2.20 16 22 C 0.08 0.93 11.18 -17.55 -0.20 0.73 16 23 N -0.48 -6.54 10.36 -13.26 -0.14 -6.67 16 24 C 0.09 1.26 10.48 -17.55 -0.18 1.07 16 25 H 0.04 0.79 7.79 -51.93 -0.40 0.39 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.06 1.05 6.46 -51.93 -0.34 0.72 16 29 H 0.09 2.01 5.74 -51.93 -0.30 1.72 16 30 H 0.28 7.67 8.14 -40.82 -0.33 7.34 16 31 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.10 1.22 6.20 -51.93 -0.32 0.90 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.16 1.85 6.03 -52.49 -0.32 1.53 16 LS Contribution 306.65 15.07 4.62 4.62 Total: -1.00 -31.90 306.65 -7.50 -39.41 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.50 Total: 6.12 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -2.86 Total: -11.90 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.26 Total: -40.22 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.09 Total: -16.19 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.11 Total: 18.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.90 -7.50 -39.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368851629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.947 kcal (2) G-P(sol) polarization free energy of solvation -31.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds