Wall clock time and date at job start Mon Mar 30 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47240 * 2 1 4 4 C 1.37095 * 120.00254 * 86.85556 * 3 2 1 5 5 H 1.07997 * 120.00681 * 210.28234 * 4 3 2 6 6 C 1.38950 * 119.99309 * 30.29157 * 4 3 2 7 7 N 1.31412 * 120.00672 * 40.41125 * 6 4 3 8 8 Si 1.86810 * 119.99824 * 220.41439 * 6 4 3 9 9 H 1.48493 * 109.47391 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47012 * 300.00136 * 8 6 4 11 11 H 1.48506 * 109.47089 * 59.99807 * 8 6 4 12 12 C 1.34779 * 119.99735 * 266.86667 * 3 2 1 13 13 O 1.21298 * 119.99410 * 179.97438 * 12 3 2 14 14 C 1.50694 * 120.00601 * 359.97438 * 12 3 2 15 15 H 1.09007 * 115.54506 * 34.41927 * 14 12 3 16 16 C 1.53005 * 117.50047 * 248.75398 * 14 12 3 17 17 C 1.52998 * 117.50210 * 180.09367 * 14 12 3 18 18 H 1.09001 * 117.49706 * 359.97438 * 17 14 12 19 19 C 1.50704 * 117.49621 * 214.97962 * 17 14 12 20 20 C 1.38676 * 120.41580 * 120.00099 * 19 17 14 21 21 C 1.38631 * 118.41876 * 180.02562 * 20 19 17 22 22 C 1.38229 * 119.15989 * 359.97438 * 21 20 19 23 23 N 1.31851 * 120.76375 * 359.97438 * 22 21 20 24 24 C 1.31887 * 121.72728 * 359.70714 * 23 22 21 25 25 H 1.08999 * 109.47540 * 59.99708 * 1 2 3 26 26 H 1.09007 * 109.47187 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46905 * 299.99484 * 1 2 3 28 28 H 1.09004 * 109.46905 * 240.00516 * 2 1 3 29 29 H 1.08999 * 109.47540 * 120.00292 * 2 1 3 30 30 H 0.96999 * 119.99369 * 5.87138 * 7 6 4 31 31 H 1.08994 * 117.49833 * 359.97438 * 16 14 12 32 32 H 1.09001 * 117.49623 * 144.99396 * 16 14 12 33 33 H 1.07997 * 120.79116 * 0.02562 * 20 19 17 34 34 H 1.08000 * 120.41849 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.61414 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.61884 * 180.30613 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1855 2.0492 1.1855 5 1 2.0614 3.1214 1.2234 6 6 2.5147 1.3467 2.3382 7 7 3.3837 0.3625 2.2824 8 14 1.7220 1.8014 3.9675 9 1 2.2384 0.9083 5.0356 10 1 2.0488 3.2111 4.3007 11 1 0.2488 1.6466 3.8615 12 6 2.3031 1.9952 -1.1655 13 8 2.7070 3.1390 -1.1655 14 6 2.1198 1.2610 -2.4686 15 1 1.2842 0.5616 -2.5006 16 6 3.3793 0.8933 -3.2557 17 6 2.4624 2.0118 -3.7569 18 1 2.8200 3.0371 -3.6619 19 6 1.6191 1.7275 -4.9732 20 6 0.9035 2.7457 -5.5849 21 6 0.1409 2.4378 -6.7009 22 6 0.1197 1.1355 -7.1637 23 7 0.8138 0.1928 -6.5571 24 6 1.5549 0.4505 -5.4971 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.8586 0.1813 1.4563 31 1 4.3405 1.1828 -2.8311 32 1 3.3724 -0.0479 -3.8054 33 1 0.9395 3.7546 -5.2011 34 1 -0.4288 3.2059 -7.2028 35 1 -0.4723 0.8873 -8.0323 36 1 2.1137 -0.3468 -5.0298 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368851629.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:04 Heat of formation + Delta-G solvation = 9.362458 kcal Electronic energy + Delta-G solvation = -19070.945530 eV Core-core repulsion = 16134.300934 eV Total energy + Delta-G solvation = -2936.644595 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.51052 -40.56027 -37.98304 -36.83775 -34.05460 -33.35607 -31.77874 -31.24579 -27.43851 -25.45792 -24.97092 -24.27371 -23.63948 -21.91363 -20.53979 -19.26965 -18.48866 -17.86654 -17.20033 -16.76217 -16.16698 -15.98438 -15.58247 -15.28621 -15.10368 -14.82212 -14.68357 -14.04079 -13.96836 -13.58865 -13.18195 -12.99630 -12.78234 -12.75968 -12.70551 -12.13845 -12.03459 -11.94710 -11.85678 -11.48701 -10.86278 -10.66094 -10.41721 -10.39221 -9.82525 -9.75213 -8.87347 -6.01919 0.09603 0.30096 1.44696 1.53596 1.81145 1.84483 2.35579 2.59616 2.83064 2.91500 3.12271 3.41453 3.66397 3.75037 3.83719 3.93365 4.01640 4.07692 4.10763 4.22889 4.36028 4.46557 4.54670 4.60496 4.68255 4.85661 4.89046 4.95520 5.03345 5.06043 5.20700 5.32986 5.36772 5.75180 5.80541 5.91585 6.59014 6.95308 6.99546 7.40571 7.95587 8.34640 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036707 B = 0.004688 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.609853 B = 5971.430243 C = 6075.274901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.089 3.911 3 N -0.450 5.450 4 C -0.450 4.450 5 H 0.048 0.952 6 C -0.003 4.003 7 N -0.856 5.856 8 Si 1.105 2.895 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.266 1.266 12 C 0.460 3.540 13 O -0.634 6.634 14 C -0.166 4.166 15 H 0.131 0.869 16 C -0.130 4.130 17 C -0.083 4.083 18 H 0.102 0.898 19 C -0.105 4.105 20 C -0.082 4.082 21 C -0.162 4.162 22 C 0.084 3.916 23 N -0.503 5.503 24 C 0.090 3.910 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.265 0.735 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.167 0.833 35 H 0.185 0.815 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 -3.152 -14.720 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.034 4.034 3 N -0.168 5.168 4 C -0.577 4.577 5 H 0.066 0.934 6 C -0.211 4.211 7 N -0.487 5.487 8 Si 0.925 3.075 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.191 1.191 12 C 0.251 3.749 13 O -0.522 6.522 14 C -0.187 4.187 15 H 0.149 0.851 16 C -0.168 4.168 17 C -0.103 4.103 18 H 0.120 0.880 19 C -0.107 4.107 20 C -0.108 4.108 21 C -0.181 4.181 22 C -0.073 4.073 23 N -0.212 5.212 24 C -0.066 4.066 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.185 0.815 35 H 0.202 0.798 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.940 -3.948 -13.427 15.621 hybrid contribution 0.512 1.754 -0.903 2.038 sum -6.428 -2.194 -14.330 15.858 Atomic orbital electron populations 1.22011 0.94725 1.02721 1.01433 1.21720 0.95606 0.83291 1.02795 1.43793 1.55298 1.13136 1.04544 1.19941 1.56183 0.94046 0.87495 0.93398 1.27522 0.93584 0.94724 1.05233 1.70891 1.16362 1.32470 1.28969 0.83106 0.76690 0.76508 0.71230 1.19707 1.20405 1.19059 1.20269 0.81296 0.87546 0.85812 1.90458 1.52780 1.21052 1.87937 1.22219 1.02978 1.03935 0.89547 0.85100 1.23184 0.93081 1.00103 1.00398 1.20814 1.00948 0.98122 0.90388 0.88028 1.20108 0.98792 0.95656 0.96185 1.21738 0.94233 0.99853 0.95000 1.22461 0.99806 0.99108 0.96711 1.23335 0.95807 0.89019 0.99157 1.67753 1.07324 1.37260 1.08847 1.22837 0.95943 0.95344 0.92503 0.92963 0.89205 0.93872 0.89713 0.91484 0.92514 0.89339 0.84238 0.84356 0.81549 0.79793 0.81606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 10.17 71.98 0.73 -4.53 16 2 C 0.09 3.70 5.27 86.38 0.46 4.15 16 3 N -0.45 -23.06 2.44 -635.54 -1.55 -24.61 16 4 C -0.45 -26.09 8.80 84.04 0.74 -25.35 16 5 H 0.05 3.09 7.76 -2.91 -0.02 3.07 16 6 C 0.00 -0.18 4.50 84.93 0.38 0.20 16 7 N -0.86 -47.28 12.22 21.66 0.26 -47.02 16 8 Si 1.10 47.26 30.06 68.60 2.06 49.32 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 12 C 0.46 23.06 7.41 87.65 0.65 23.71 16 13 O -0.63 -37.53 16.04 -3.08 -0.05 -37.58 16 14 C -0.17 -5.98 4.43 -11.54 -0.05 -6.03 16 15 H 0.13 4.17 6.80 -2.38 -0.02 4.16 16 16 C -0.13 -3.86 9.57 30.62 0.29 -3.56 16 17 C -0.08 -2.64 5.58 -11.51 -0.06 -2.71 16 18 H 0.10 3.71 7.67 -2.39 -0.02 3.70 16 19 C -0.11 -2.78 5.62 -19.77 -0.11 -2.89 16 20 C -0.08 -1.91 9.89 22.47 0.22 -1.69 16 21 C -0.16 -2.89 10.11 22.36 0.23 -2.66 16 22 C 0.08 1.57 11.18 84.69 0.95 2.52 16 23 N -0.50 -12.12 10.36 -195.85 -2.03 -14.15 16 24 C 0.09 2.19 10.48 84.67 0.89 3.08 16 25 H 0.05 1.73 7.79 -2.39 -0.02 1.71 16 26 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 2.99 6.46 -2.39 -0.02 2.97 16 29 H 0.07 3.07 5.74 -2.39 -0.01 3.06 16 30 H 0.27 15.06 8.14 -92.71 -0.75 14.31 16 31 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.14 3.00 6.20 -2.39 -0.01 2.98 16 33 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.17 3.45 6.03 -2.91 -0.02 3.43 16 Total: -1.00 -72.99 306.65 5.10 -67.89 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 1.10 Total: 21.93 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 5.31 Total: -15.77 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -3.32 Total: -85.78 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -0.05 Total: -37.58 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.06 Total: 49.32 kcal Total: -72.99 5.10 -67.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368851629.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.251 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds