Wall clock time and date at job start Mon Mar 30 2020 04:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86802 * 120.00454 * 2 1 4 4 H 1.48495 * 109.47370 * 240.00421 * 3 2 1 5 5 H 1.48504 * 109.46979 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46831 * 119.99838 * 3 2 1 7 7 C 1.40058 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99808 * 179.97438 * 7 2 1 9 9 C 1.46376 * 119.99674 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99948 * 5.65373 * 9 7 2 11 11 N 1.34773 * 119.99643 * 185.64333 * 9 7 2 12 12 C 1.46927 * 120.62843 * 174.74835 * 11 9 7 13 13 C 1.53198 * 108.77379 * 233.58959 * 12 11 9 14 14 C 1.53043 * 109.30716 * 305.35989 * 13 12 11 15 15 C 1.50703 * 109.45658 * 181.38698 * 14 13 12 16 16 C 1.38229 * 119.61834 * 275.02362 * 15 14 13 17 17 C 1.38624 * 119.15833 * 179.74868 * 16 15 14 18 18 C 1.38675 * 118.42089 * 0.47009 * 17 16 15 19 19 C 1.38169 * 119.16398 * 359.50807 * 18 17 16 20 20 N 1.31855 * 119.61681 * 95.00210 * 15 14 13 21 21 C 1.53040 * 109.53888 * 61.37003 * 14 13 12 22 22 C 1.46924 * 120.63431 * 354.72450 * 11 9 7 23 23 H 0.97004 * 119.99503 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.58784 * 113.79836 * 12 11 9 25 25 H 1.09003 * 109.58762 * 353.37258 * 12 11 9 26 26 H 1.09000 * 109.49321 * 185.41219 * 13 12 11 27 27 H 1.08994 * 109.50073 * 65.31094 * 13 12 11 28 28 H 1.08996 * 109.46175 * 301.35805 * 14 13 12 29 29 H 1.07998 * 120.41659 * 359.95242 * 16 15 14 30 30 H 1.08005 * 120.79051 * 180.23228 * 17 16 15 31 31 H 1.08008 * 120.41333 * 179.78226 * 18 17 16 32 32 H 1.08003 * 119.61753 * 180.25330 * 19 18 17 33 33 H 1.08998 * 109.49958 * 58.57888 * 21 14 13 34 34 H 1.09000 * 109.49999 * 178.67896 * 21 14 13 35 35 H 1.09001 * 109.58273 * 246.20332 * 22 11 9 36 36 H 1.09001 * 109.58379 * 6.62352 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2759 2.7465 0.0006 6 1 3.0946 1.6962 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0625 -2.4830 -0.1039 11 7 1.9440 -3.6449 0.1137 12 6 1.2181 -4.9170 0.2307 13 6 1.7167 -5.6565 1.4763 14 6 3.2380 -5.8056 1.4011 15 6 3.7285 -6.5626 2.6083 16 6 3.9825 -5.8823 3.7845 17 6 4.4283 -6.5889 4.8907 18 6 4.6124 -7.9580 4.7691 19 6 4.3373 -8.5697 3.5611 20 7 3.9101 -7.8663 2.5305 21 6 3.8872 -4.4200 1.3697 22 6 3.4131 -3.6665 0.1231 23 1 -0.4849 0.8401 0.0004 24 1 1.4028 -5.5258 -0.6542 25 1 0.1500 -4.7208 0.3254 26 1 1.2563 -6.6433 1.5221 27 1 1.4505 -5.0885 2.3676 28 1 3.5051 -6.3520 0.4966 29 1 3.8322 -4.8144 3.8419 30 1 4.6313 -6.0845 5.8239 31 1 4.9620 -8.5395 5.6095 32 1 4.4742 -9.6362 3.4594 33 1 3.6004 -3.8636 2.2621 34 1 4.9715 -4.5268 1.3398 35 1 3.7767 -4.1734 -0.7707 36 1 3.7933 -2.6452 0.1467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375376888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:58 Heat of formation + Delta-G solvation = -6.224726 kcal Electronic energy + Delta-G solvation = -19147.930926 eV Core-core repulsion = 16210.610419 eV Total energy + Delta-G solvation = -2937.320506 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.39785 -38.38816 -35.94943 -32.99110 -32.53647 -32.33200 -30.66499 -29.70173 -26.47401 -24.84573 -23.70801 -22.46018 -22.09496 -20.29565 -18.77796 -16.99759 -16.60163 -16.14248 -15.67653 -15.27357 -14.47866 -14.22580 -14.18708 -13.88401 -13.75093 -13.14121 -13.07116 -12.92564 -12.36060 -11.91626 -11.70670 -11.54100 -11.18978 -11.00829 -10.75391 -10.68681 -10.60633 -10.24003 -10.14891 -9.86572 -9.79333 -9.39941 -8.91156 -8.84939 -7.56986 -7.20375 -6.19431 -4.64333 1.09396 1.25670 3.14819 3.20151 3.21520 3.77883 4.08362 4.22376 4.56541 4.59953 4.73906 4.77569 5.02593 5.12060 5.21952 5.31376 5.35610 5.62441 5.70598 5.74758 5.85501 5.90063 5.99100 6.05445 6.13260 6.20525 6.29425 6.41162 6.49776 6.52324 6.60423 6.72151 6.81971 7.45767 7.64677 8.01271 8.14576 8.36575 9.02259 9.45242 10.58330 10.76956 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.032614 B = 0.004769 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.332321 B = 5870.154892 C = 6288.887082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.905 3.095 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.560 3.440 10 O -0.578 6.578 11 N -0.642 5.642 12 C 0.122 3.878 13 C -0.117 4.117 14 C -0.037 4.037 15 C 0.146 3.854 16 C -0.167 4.167 17 C -0.076 4.076 18 C -0.187 4.187 19 C 0.097 3.903 20 N -0.486 5.486 21 C -0.128 4.128 22 C 0.123 3.877 23 H 0.269 0.731 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.152 0.848 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.492 -11.502 7.940 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.381 5.381 12 C -0.002 4.002 13 C -0.156 4.156 14 C -0.056 4.056 15 C 0.009 3.991 16 C -0.187 4.187 17 C -0.102 4.102 18 C -0.207 4.207 19 C -0.060 4.060 20 N -0.195 5.195 21 C -0.167 4.167 22 C -0.002 4.002 23 H 0.079 0.921 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.169 0.831 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.446 -11.810 7.088 16.701 hybrid contribution 0.825 1.044 1.036 1.686 sum 10.271 -10.766 8.124 16.952 Atomic orbital electron populations 1.70005 1.07069 1.27373 1.35270 1.25723 0.94590 1.00247 0.92600 0.86472 0.79873 0.81198 0.79450 1.19227 1.20573 1.19294 1.20947 0.93524 0.89290 1.54450 0.90932 1.18235 0.86878 0.82218 0.76099 1.90590 1.14508 1.86140 1.54878 1.48185 1.04616 1.05985 1.79292 1.21113 0.98535 0.85877 0.94676 1.21923 0.93199 1.00226 1.00287 1.20123 0.96143 0.94920 0.94413 1.21450 0.93027 0.89594 0.95038 1.22125 1.00922 1.02071 0.93586 1.21599 0.95653 0.94249 0.98652 1.22076 1.03444 0.95713 0.99484 1.22717 0.94679 0.99989 0.88638 1.67533 1.12410 1.07838 1.31674 1.22090 0.99194 0.94595 1.00792 1.21412 0.82693 1.01357 0.94705 0.92054 0.93895 0.89663 0.91830 0.91769 0.89497 0.84335 0.85045 0.85190 0.83083 0.91176 0.91787 0.93918 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.89 11.84 55.55 0.66 -22.23 16 2 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 3 Si 0.91 19.81 29.56 -169.99 -5.02 14.78 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.55 -15.07 8.88 -35.63 -0.32 -15.39 16 8 H 0.07 1.81 5.64 -52.49 -0.30 1.51 16 9 C 0.56 15.85 7.61 -12.99 -0.10 15.75 16 10 O -0.58 -18.72 14.48 5.20 0.08 -18.65 16 11 N -0.64 -14.51 2.97 -174.43 -0.52 -15.02 16 12 C 0.12 2.42 6.42 -3.71 -0.02 2.40 16 13 C -0.12 -1.94 5.34 -26.61 -0.14 -2.08 16 14 C -0.04 -0.55 2.46 -91.73 -0.23 -0.78 16 15 C 0.15 2.08 5.79 -82.58 -0.48 1.60 16 16 C -0.17 -2.11 9.18 -39.44 -0.36 -2.47 16 17 C -0.08 -0.79 10.18 -39.28 -0.40 -1.19 16 18 C -0.19 -1.83 10.11 -39.45 -0.40 -2.23 16 19 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 20 N -0.49 -6.87 10.27 -9.47 -0.10 -6.97 16 21 C -0.13 -1.93 4.74 -26.61 -0.13 -2.06 16 22 C 0.12 2.24 6.35 -3.71 -0.02 2.22 16 23 H 0.27 7.28 8.29 -40.82 -0.34 6.95 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.09 1.90 7.04 -51.93 -0.37 1.53 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 29 H 0.14 1.68 6.35 -52.49 -0.33 1.35 16 30 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 32 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.07 1.09 6.57 -51.93 -0.34 0.75 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.83 5.30 -51.93 -0.28 1.55 16 LS Contribution 296.41 15.07 4.47 4.47 Total: -1.00 -34.17 296.41 -7.88 -42.05 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.55 Total: 2.58 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.89 Total: -1.01 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.04 Total: -44.22 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.08 Total: -18.65 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.17 -7.88 -42.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375376888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.826 kcal (2) G-P(sol) polarization free energy of solvation -34.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds