Wall clock time and date at job start Mon Mar 30 2020 04:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48507 * 109.46944 * 239.99856 * 3 2 1 5 5 H 1.48501 * 109.46849 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47309 * 119.99340 * 3 2 1 7 7 C 1.37880 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99872 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00146 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47133 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00099 * 90.00170 * 10 9 7 12 12 O 1.21290 * 120.00058 * 174.35895 * 11 10 9 13 13 C 1.50706 * 120.00116 * 354.35535 * 11 10 9 14 14 H 1.09000 * 113.03080 * 51.72056 * 13 11 10 15 15 C 1.53941 * 113.75814 * 280.00257 * 13 11 10 16 16 C 1.53935 * 86.33920 * 269.40098 * 15 13 11 17 17 N 1.47949 * 86.18373 * 336.28216 * 16 15 13 18 18 C 1.39927 * 119.99640 * 270.00046 * 10 9 7 19 19 C 1.38862 * 120.06882 * 123.06494 * 18 10 9 20 20 C 1.38116 * 119.92956 * 179.78714 * 19 18 10 21 21 C 1.38286 * 120.06961 * 0.48874 * 20 19 18 22 22 C 1.38282 * 120.13561 * 359.73967 * 21 20 19 23 23 C 1.38111 * 120.07646 * 0.02562 * 22 21 20 24 24 H 0.97002 * 120.00076 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47527 * 59.99592 * 9 7 2 26 26 H 1.09001 * 109.47041 * 299.99667 * 9 7 2 27 27 H 1.09005 * 113.73315 * 23.75894 * 15 13 11 28 28 H 1.08998 * 113.73471 * 155.04433 * 15 13 11 29 29 H 1.09006 * 113.75871 * 90.59945 * 16 15 13 30 30 H 1.09003 * 113.76129 * 221.96105 * 16 15 13 31 31 H 1.00899 * 111.00593 * 137.58282 * 17 16 15 32 32 H 1.08003 * 120.03920 * 0.02562 * 19 18 10 33 33 H 1.08004 * 119.96905 * 180.22879 * 20 19 18 34 34 H 1.07994 * 119.92879 * 179.72509 * 21 20 19 35 35 H 1.08001 * 119.96064 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.03612 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6399 -4.1244 1.1695 12 8 3.3468 -5.1101 1.1730 13 6 2.2504 -3.4719 2.4709 14 1 1.1756 -3.3177 2.5657 15 6 3.0884 -2.2275 2.8159 16 6 4.0352 -3.1912 3.5537 17 7 2.8703 -4.0970 3.6601 18 6 2.6585 -4.1450 -1.2095 19 6 4.0193 -4.1867 -1.4832 20 6 4.4660 -4.7167 -2.6778 21 6 3.5592 -5.1963 -3.6052 22 6 2.2033 -5.1518 -3.3375 23 6 1.7504 -4.6275 -2.1428 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.5399 -1.7480 1.9474 28 1 2.5785 -1.5239 3.4740 29 1 4.8390 -3.5811 2.9291 30 1 4.3864 -2.8128 4.5137 31 1 3.1358 -5.0517 3.4698 32 1 4.7278 -3.8086 -0.7611 33 1 5.5244 -4.7528 -2.8897 34 1 3.9108 -5.6062 -4.5404 35 1 1.4976 -5.5276 -4.0637 36 1 0.6912 -4.5927 -1.9346 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384750070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:47 Heat of formation + Delta-G solvation = 27.772277 kcal Electronic energy + Delta-G solvation = -19762.165219 eV Core-core repulsion = 16826.318933 eV Total energy + Delta-G solvation = -2935.846286 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50716 -38.80548 -36.97949 -35.18062 -32.71441 -30.55801 -29.85720 -27.28555 -27.02053 -26.28498 -23.33177 -22.58491 -21.92647 -20.33860 -18.23429 -17.21697 -16.68231 -16.56947 -15.92156 -15.55409 -15.00377 -14.55775 -14.20282 -13.98941 -13.50369 -13.16540 -12.97134 -12.62421 -12.39109 -12.18062 -11.61509 -11.50476 -11.24551 -11.11722 -10.87121 -10.82126 -10.61657 -10.39742 -10.24441 -9.93826 -9.65001 -8.87377 -8.65277 -8.55038 -8.53463 -7.60757 -6.25366 -4.32345 1.70275 1.79313 3.04760 3.20041 3.25726 3.28197 3.61295 4.18024 4.28720 4.49121 5.02122 5.08772 5.14149 5.27540 5.30507 5.43818 5.45687 5.74697 5.78188 5.92279 5.95290 5.99097 6.09820 6.30200 6.36476 6.50451 6.58047 6.62672 6.79315 6.84200 6.87362 7.06802 7.18582 7.50327 7.54575 7.67521 7.93058 8.04213 8.62998 8.77312 9.34091 10.81727 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.009602 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.915574 B = 2915.432073 C = 4243.192835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.237 3.763 10 N -0.549 5.549 11 C 0.515 3.485 12 O -0.560 6.560 13 C 0.023 3.977 14 H 0.122 0.878 15 C -0.113 4.113 16 C -0.004 4.004 17 N -0.616 5.616 18 C 0.176 3.824 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.140 4.140 22 C -0.110 4.110 23 C -0.129 4.129 24 H 0.267 0.733 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.325 0.675 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 -5.682 -1.340 7.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.118 3.882 10 N -0.275 5.275 11 C 0.303 3.697 12 O -0.440 6.440 13 C -0.091 4.091 14 H 0.139 0.861 15 C -0.151 4.151 16 C -0.135 4.135 17 N -0.243 5.243 18 C 0.084 3.916 19 C -0.132 4.132 20 C -0.129 4.129 21 C -0.159 4.159 22 C -0.129 4.129 23 C -0.149 4.149 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.394 -5.800 -0.584 7.300 hybrid contribution 0.803 0.810 -0.906 1.456 sum 5.197 -4.991 -1.490 7.358 Atomic orbital electron populations 1.69897 1.05988 1.27572 1.49200 1.24881 0.94827 0.99161 0.94585 0.86594 0.79641 0.82621 0.78930 1.20132 1.21088 1.19851 1.21285 0.93376 0.90028 1.52577 0.92021 1.19652 0.87230 0.82089 0.99187 1.45994 1.44860 1.34153 1.02464 1.20867 0.79425 0.83373 0.86001 1.90631 1.39250 1.26502 1.87569 1.22984 1.02685 0.96196 0.87208 0.86078 1.23244 0.95708 0.95320 1.00852 1.23755 0.94060 0.95024 1.00653 1.67150 1.17204 1.07100 1.32817 1.17664 0.92274 0.94700 0.86979 1.21087 0.94765 1.00225 0.97115 1.20917 0.99280 0.98991 0.93760 1.20997 0.93359 1.02119 0.99383 1.20899 0.95612 0.99846 0.96494 1.21127 0.99638 0.99443 0.94687 0.92332 0.94081 0.93798 0.89174 0.88641 0.91815 0.89748 0.86007 0.86532 0.86362 0.86528 0.86191 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.62 13.29 55.43 0.74 -22.89 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.53 -13.17 7.77 -34.44 -0.27 -13.43 16 8 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 9 C 0.24 5.44 4.84 -5.19 -0.03 5.42 16 10 N -0.55 -11.59 2.56 -114.74 -0.29 -11.89 16 11 C 0.52 10.61 6.74 -10.99 -0.07 10.54 16 12 O -0.56 -12.30 15.23 5.55 0.08 -12.21 16 13 C 0.02 0.44 3.82 -67.80 -0.26 0.18 16 14 H 0.12 2.29 6.97 -51.93 -0.36 1.92 16 15 C -0.11 -2.01 7.24 -25.80 -0.19 -2.20 16 16 C 0.00 -0.07 8.58 -2.77 -0.02 -0.09 16 17 N -0.62 -10.55 8.45 -111.53 -0.94 -11.49 16 18 C 0.18 3.55 5.16 -83.70 -0.43 3.12 16 19 C -0.11 -2.11 8.96 -39.39 -0.35 -2.47 16 20 C -0.11 -1.75 10.04 -39.61 -0.40 -2.14 16 21 C -0.14 -2.03 10.04 -39.55 -0.40 -2.43 16 22 C -0.11 -1.68 10.04 -39.61 -0.40 -2.07 16 23 C -0.13 -2.33 9.31 -39.39 -0.37 -2.70 16 24 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 25 H 0.04 1.00 7.34 -51.93 -0.38 0.62 16 26 H 0.04 1.03 6.35 -51.93 -0.33 0.70 16 27 H 0.09 1.75 6.24 -51.93 -0.32 1.43 16 28 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.32 5.63 7.71 -39.29 -0.30 5.32 16 32 H 0.12 2.23 8.05 -52.48 -0.42 1.81 16 33 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.12 2.13 7.82 -52.49 -0.41 1.72 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -27.43 302.84 -8.72 -36.16 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.57 Total: 9.51 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.28 Total: -6.63 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.50 Total: -46.27 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.43 -8.72 -36.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384750070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.930 kcal (2) G-P(sol) polarization free energy of solvation -27.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds