Wall clock time and date at job start Mon Mar 30 2020 04:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00104 * 2 1 4 4 H 1.48507 * 109.46944 * 239.99856 * 3 2 1 5 5 H 1.48501 * 109.46849 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47309 * 119.99340 * 3 2 1 7 7 C 1.37880 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99872 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00146 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47133 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00099 * 90.00170 * 10 9 7 12 12 O 1.21290 * 120.00058 * 174.35895 * 11 10 9 13 13 C 1.50706 * 120.00116 * 354.35535 * 11 10 9 14 14 H 1.09000 * 113.03080 * 51.72056 * 13 11 10 15 15 C 1.53941 * 113.75814 * 280.00257 * 13 11 10 16 16 C 1.53935 * 86.33920 * 269.40098 * 15 13 11 17 17 N 1.47949 * 86.18373 * 336.28216 * 16 15 13 18 18 C 1.39927 * 119.99640 * 270.00046 * 10 9 7 19 19 C 1.38862 * 120.06882 * 123.06494 * 18 10 9 20 20 C 1.38116 * 119.92956 * 179.78714 * 19 18 10 21 21 C 1.38286 * 120.06961 * 0.48874 * 20 19 18 22 22 C 1.38282 * 120.13561 * 359.73967 * 21 20 19 23 23 C 1.38111 * 120.07646 * 0.02562 * 22 21 20 24 24 H 0.97002 * 120.00076 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47527 * 59.99592 * 9 7 2 26 26 H 1.09001 * 109.47041 * 299.99667 * 9 7 2 27 27 H 1.09005 * 113.73315 * 23.75894 * 15 13 11 28 28 H 1.08998 * 113.73471 * 155.04433 * 15 13 11 29 29 H 1.09006 * 113.75871 * 90.59945 * 16 15 13 30 30 H 1.09003 * 113.76129 * 221.96105 * 16 15 13 31 31 H 1.00899 * 111.00593 * 137.58282 * 17 16 15 32 32 H 1.08003 * 120.03920 * 0.02562 * 19 18 10 33 33 H 1.08004 * 119.96905 * 180.22879 * 20 19 18 34 34 H 1.07994 * 119.92879 * 179.72509 * 21 20 19 35 35 H 1.08001 * 119.96064 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.03612 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6399 -4.1244 1.1695 12 8 3.3468 -5.1101 1.1730 13 6 2.2504 -3.4719 2.4709 14 1 1.1756 -3.3177 2.5657 15 6 3.0884 -2.2275 2.8159 16 6 4.0352 -3.1912 3.5537 17 7 2.8703 -4.0970 3.6601 18 6 2.6585 -4.1450 -1.2095 19 6 4.0193 -4.1867 -1.4832 20 6 4.4660 -4.7167 -2.6778 21 6 3.5592 -5.1963 -3.6052 22 6 2.2033 -5.1518 -3.3375 23 6 1.7504 -4.6275 -2.1428 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.5399 -1.7480 1.9474 28 1 2.5785 -1.5239 3.4740 29 1 4.8390 -3.5811 2.9291 30 1 4.3864 -2.8128 4.5137 31 1 3.1358 -5.0517 3.4698 32 1 4.7278 -3.8086 -0.7611 33 1 5.5244 -4.7528 -2.8897 34 1 3.9108 -5.6062 -4.5404 35 1 1.4976 -5.5276 -4.0637 36 1 0.6912 -4.5927 -1.9346 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384750070.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:47 Heat of formation + Delta-G solvation = 10.752380 kcal Electronic energy + Delta-G solvation = -19762.903257 eV Core-core repulsion = 16826.318933 eV Total energy + Delta-G solvation = -2936.584324 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.04641 -40.16929 -38.44771 -36.85414 -34.60555 -31.86046 -31.30467 -29.11669 -28.44352 -27.72477 -25.14494 -23.98525 -23.30695 -21.75285 -19.75687 -18.81731 -18.37004 -18.26944 -17.32387 -16.98547 -16.66929 -16.11438 -15.73907 -15.31240 -14.99471 -14.59632 -14.37611 -14.30038 -14.00965 -13.63858 -13.38177 -13.08664 -12.82680 -12.64679 -12.47602 -12.21964 -12.11274 -11.97913 -11.81255 -11.73303 -11.24837 -10.60334 -10.40188 -10.01534 -9.85441 -9.14036 -8.20331 -6.33417 0.35785 0.48290 1.41982 1.43151 1.47017 1.52259 2.03988 2.41301 2.87153 3.07120 3.10981 3.52387 3.64183 4.01553 4.04653 4.07844 4.26234 4.36642 4.48715 4.52515 4.58369 4.63938 4.77395 4.84800 4.95976 5.04334 5.09371 5.13338 5.17971 5.45079 5.51057 5.58321 5.68209 5.74672 6.00466 6.08494 6.13183 6.36765 6.73210 7.08612 7.36456 8.85613 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.009602 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.915574 B = 2915.432073 C = 4243.192835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.028 3.972 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.253 3.747 10 N -0.550 5.550 11 C 0.513 3.487 12 O -0.577 6.577 13 C 0.019 3.981 14 H 0.116 0.884 15 C -0.113 4.113 16 C 0.007 3.993 17 N -0.610 5.610 18 C 0.134 3.866 19 C -0.135 4.135 20 C -0.109 4.109 21 C -0.129 4.129 22 C -0.105 4.105 23 C -0.149 4.149 24 H 0.268 0.732 25 H 0.022 0.978 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.324 0.676 32 H 0.101 0.899 33 H 0.149 0.851 34 H 0.160 0.840 35 H 0.155 0.845 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -5.936 -2.280 8.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.173 4.173 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.133 3.867 10 N -0.275 5.275 11 C 0.302 3.698 12 O -0.458 6.458 13 C -0.095 4.095 14 H 0.133 0.867 15 C -0.151 4.151 16 C -0.123 4.123 17 N -0.236 5.236 18 C 0.043 3.957 19 C -0.155 4.155 20 C -0.128 4.128 21 C -0.147 4.147 22 C -0.123 4.123 23 C -0.169 4.169 24 H 0.077 0.923 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.119 0.881 33 H 0.167 0.833 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.636 -6.064 -1.528 8.418 hybrid contribution 0.439 0.805 -0.705 1.157 sum 6.075 -5.259 -2.233 8.340 Atomic orbital electron populations 1.69992 1.07181 1.28251 1.50296 1.25539 0.95456 1.01955 0.94357 0.85721 0.78547 0.79141 0.79051 1.20258 1.20871 1.18822 1.21389 0.93012 0.90791 1.51891 0.92748 1.19286 0.87192 0.82491 0.97709 1.45894 1.44488 1.33704 1.03416 1.21157 0.79107 0.83150 0.86430 1.90598 1.40154 1.27228 1.87836 1.22981 1.02549 0.97037 0.86966 0.86669 1.23223 0.96107 0.95244 1.00491 1.23765 0.93208 0.93600 1.01702 1.67164 1.17770 1.07203 1.31503 1.18060 0.93460 0.96936 0.87288 1.21161 0.93995 1.01851 0.98506 1.21317 1.01303 0.97608 0.92529 1.21511 0.92656 1.00151 1.00349 1.21342 0.97007 0.98259 0.95702 1.21308 0.99299 1.00496 0.95791 0.92301 0.95957 0.94683 0.91149 0.87901 0.92218 0.86853 0.86049 0.88061 0.83325 0.82224 0.82751 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.47 13.29 21.45 0.28 -49.19 16 2 C 0.03 1.41 5.46 84.66 0.46 1.87 16 3 Si 0.95 40.73 29.54 68.60 2.03 42.75 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.53 -26.81 7.77 25.60 0.20 -26.61 16 8 H 0.05 2.78 7.05 -2.91 -0.02 2.76 16 9 C 0.25 12.07 4.84 85.63 0.41 12.49 16 10 N -0.55 -24.09 2.56 -635.30 -1.63 -25.72 16 11 C 0.51 21.75 6.74 87.66 0.59 22.34 16 12 O -0.58 -25.91 15.23 -3.06 -0.05 -25.96 16 13 C 0.02 0.72 3.82 44.28 0.17 0.89 16 14 H 0.12 4.49 6.97 -2.39 -0.02 4.48 16 15 C -0.11 -4.00 7.24 31.24 0.23 -3.77 16 16 C 0.01 0.22 8.58 86.41 0.74 0.96 16 17 N -0.61 -20.59 8.45 -506.76 -4.28 -24.87 16 18 C 0.13 5.52 5.16 38.15 0.20 5.72 16 19 C -0.14 -5.12 8.96 22.39 0.20 -4.92 16 20 C -0.11 -3.20 10.04 22.25 0.22 -2.98 16 21 C -0.13 -3.27 10.04 22.29 0.22 -3.04 16 22 C -0.10 -2.94 10.04 22.25 0.22 -2.72 16 23 C -0.15 -5.40 9.31 22.39 0.21 -5.19 16 24 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 25 H 0.02 1.14 7.34 -2.39 -0.02 1.13 16 26 H 0.04 1.72 6.35 -2.39 -0.02 1.71 16 27 H 0.07 2.78 6.24 -2.38 -0.01 2.77 16 28 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.32 11.14 7.71 -89.69 -0.69 10.45 16 32 H 0.10 4.01 8.05 -2.91 -0.02 3.99 16 33 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 34 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.12 4.23 7.82 -2.91 -0.02 4.21 16 Total: -1.00 -59.45 302.84 0.84 -58.61 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.40 Total: 29.32 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.08 Total: -4.95 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -5.62 Total: -99.77 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -59.45 0.84 -58.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384750070.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.364 kcal (2) G-P(sol) polarization free energy of solvation -59.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds