Wall clock time and date at job start Mon Mar 30 2020 04:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.52998 * 109.47058 * 270.00111 * 3 2 1 5 5 O 1.42896 * 109.47237 * 65.00010 * 4 3 2 6 6 C 1.42905 * 113.99931 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46820 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00470 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99482 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99865 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00445 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47274 * 89.99324 * 11 9 7 13 13 H 1.48500 * 109.47303 * 210.00091 * 11 9 7 14 14 H 1.48504 * 109.47049 * 329.99669 * 11 9 7 15 15 C 1.39185 * 119.99958 * 179.97438 * 2 1 3 16 16 C 1.39179 * 119.92515 * 0.02562 * 15 2 1 17 17 C 1.37650 * 120.07100 * 179.97438 * 16 15 2 18 18 C 1.39799 * 119.92913 * 0.02562 * 17 16 15 19 19 C 1.43205 * 120.07701 * 179.97438 * 18 17 16 20 20 N 6.73122 * 120.00063 * 180.02562 * 2 1 3 21 21 C 1.39813 * 119.84996 * 0.27424 * 18 17 16 22 22 C 1.37655 * 119.92146 * 359.44481 * 21 18 17 23 23 H 1.09003 * 109.46925 * 269.99849 * 1 2 3 24 24 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 25 25 H 1.09003 * 109.47307 * 149.99910 * 1 2 3 26 26 H 1.08996 * 109.47153 * 29.99982 * 3 2 1 27 27 H 1.09002 * 109.47094 * 150.00008 * 3 2 1 28 28 H 1.08997 * 109.47032 * 185.00174 * 4 3 2 29 29 H 1.09007 * 109.47018 * 305.00175 * 4 3 2 30 30 H 1.09004 * 109.46729 * 299.99921 * 6 5 4 31 31 H 1.08999 * 109.47023 * 59.99865 * 6 5 4 32 32 H 0.96999 * 120.00164 * 180.02562 * 10 9 7 33 33 H 1.07994 * 119.96165 * 359.95647 * 16 15 2 34 34 H 1.08008 * 120.03484 * 179.97438 * 17 16 15 35 35 H 1.08001 * 120.04125 * 179.72493 * 21 18 17 36 36 H 1.07991 * 119.96081 * 180.27907 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 8 1.2059 1.9935 -2.0813 6 6 1.3323 2.4164 -3.4405 7 6 -0.0359 2.6854 -4.0121 8 1 -0.9141 2.5476 -3.3988 9 6 -0.1665 3.1083 -5.3179 10 7 -1.3605 3.3436 -5.8167 11 14 1.3524 3.3474 -6.3787 12 1 1.6693 2.0788 -7.0825 13 1 1.0960 4.4166 -7.3767 14 1 2.4997 3.7368 -5.5199 15 6 2.1609 -1.2054 0.0005 16 6 1.4634 -2.4098 0.0005 17 6 2.1486 -3.6036 0.0005 18 6 3.5466 -3.6055 0.0011 19 6 4.2627 -4.8456 0.0016 20 7 4.8307 -5.8294 -0.0026 21 6 4.2441 -2.3938 0.0074 22 6 3.5527 -1.2035 0.0016 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1385 0.5138 28 1 3.0731 2.6064 -1.4438 29 1 2.9641 0.9131 -1.9816 30 1 1.9300 3.3270 -3.4836 31 1 1.8206 1.6335 -4.0207 32 1 -1.4524 3.6408 -6.7354 33 1 0.3835 -2.4077 0.0008 34 1 1.6068 -4.5380 0.0010 35 1 5.3241 -2.3916 0.0124 36 1 4.0908 -0.2672 0.0019 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385294632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:36 Heat of formation + Delta-G solvation = 17.618051 kcal Electronic energy + Delta-G solvation = -18371.513890 eV Core-core repulsion = 15435.227284 eV Total energy + Delta-G solvation = -2936.286606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.91111 -37.65733 -36.60664 -35.52835 -32.75301 -31.57387 -30.69329 -29.56199 -27.81590 -25.95297 -23.55216 -22.33394 -21.94101 -21.08323 -18.92259 -17.27980 -16.84495 -16.24007 -15.60487 -15.26903 -14.75436 -14.65336 -14.31914 -13.89597 -13.87268 -13.70888 -13.65724 -12.94357 -12.65788 -12.51945 -12.29084 -12.24099 -12.04643 -11.94297 -11.55593 -11.22170 -10.95278 -10.82927 -10.76458 -9.94316 -9.81329 -9.28487 -9.15506 -8.96054 -8.57219 -7.34018 -6.19477 -4.19192 0.95591 1.31949 2.70525 2.98445 3.06845 3.19460 3.26924 3.27164 3.90315 4.01434 4.28575 4.42625 4.69530 4.76601 5.06037 5.12278 5.19266 5.24951 5.35539 5.44965 5.51917 5.59961 5.66319 5.72783 5.87843 5.96873 6.06178 6.12681 6.18771 6.33612 6.50712 6.60490 6.90247 7.16665 7.39002 7.50682 7.54878 7.89115 8.55653 8.89802 9.39596 10.93337 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.004121 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.635548 B = 6793.484451 C = 7154.397966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.604 5.604 3 C 0.121 3.879 4 C 0.036 3.964 5 O -0.377 6.377 6 C 0.171 3.829 7 C -0.520 4.520 8 H 0.082 0.918 9 C 0.073 3.927 10 N -0.894 5.894 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.257 3.743 16 C -0.205 4.205 17 C -0.015 4.015 18 C -0.115 4.115 19 C 0.270 3.730 20 N -0.450 5.450 21 C -0.016 4.016 22 C -0.210 4.210 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.002 0.998 31 H -0.002 1.002 32 H 0.267 0.733 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -6.955 13.633 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.308 5.308 3 C -0.002 4.002 4 C -0.043 4.043 5 O -0.296 6.296 6 C 0.096 3.904 7 C -0.558 4.558 8 H 0.100 0.900 9 C -0.129 4.129 10 N -0.532 5.532 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.191 1.191 15 C 0.149 3.851 16 C -0.228 4.228 17 C -0.037 4.037 18 C -0.121 4.121 19 C -0.044 4.044 20 N -0.126 5.126 21 C -0.037 4.037 22 C -0.233 4.233 23 H 0.065 0.935 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.015 0.985 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.417 -8.198 13.547 17.932 hybrid contribution 0.750 0.651 -0.996 1.406 sum 9.167 -7.547 12.551 17.278 Atomic orbital electron populations 1.21838 0.78289 1.04705 1.00705 1.46581 1.06023 1.02707 1.75529 1.21661 0.97451 0.85021 0.96074 1.22864 0.89106 0.98693 0.93623 1.87870 1.26319 1.87626 1.27829 1.20592 0.98625 0.92758 0.78474 1.20842 0.91815 1.45713 0.97434 0.90027 1.24764 0.96036 0.94758 0.97338 1.69868 1.21971 1.45834 1.15545 0.86860 0.83620 0.78562 0.80761 1.19890 1.20728 1.19143 1.18161 0.91349 0.86265 0.89354 1.20623 1.00319 0.90382 1.11468 1.20830 0.91716 0.98016 0.93126 1.15732 0.92175 0.86694 1.17547 1.25794 0.93151 0.92847 0.92640 1.81217 1.08938 1.11176 1.11300 1.20811 0.99425 0.90258 0.93234 1.20587 0.92080 0.98522 1.12065 0.93455 0.89107 0.91258 0.89508 0.89434 0.93412 0.93859 0.98013 0.98478 0.92287 0.84862 0.85438 0.85488 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 9.99 59.85 0.60 1.62 16 2 N -0.60 -7.25 2.96 -179.60 -0.53 -7.78 16 3 C 0.12 1.38 5.55 -4.04 -0.02 1.35 16 4 C 0.04 0.54 6.28 37.16 0.23 0.77 16 5 O -0.38 -7.81 9.15 -35.23 -0.32 -8.14 16 6 C 0.17 4.09 4.76 36.01 0.17 4.26 16 7 C -0.52 -14.77 9.99 -34.44 -0.34 -15.11 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 11 Si 0.88 20.85 27.47 -169.99 -4.67 16.18 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 15 C 0.26 2.92 6.55 -83.82 -0.55 2.37 16 16 C -0.21 -2.14 9.18 -39.45 -0.36 -2.50 16 17 C -0.02 -0.15 9.74 -39.21 -0.38 -0.53 16 18 C -0.12 -1.21 5.74 -106.80 -0.61 -1.82 16 19 C 0.27 3.26 15.33 -22.47 -0.34 2.92 16 20 N -0.45 -6.42 18.54 41.83 0.78 -5.64 16 21 C -0.02 -0.15 9.75 -39.21 -0.38 -0.53 16 22 C -0.21 -2.12 9.18 -39.44 -0.36 -2.48 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.09 1.30 7.11 -51.93 -0.37 0.93 16 25 H 0.07 0.77 6.17 -51.93 -0.32 0.45 16 26 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 27 H 0.09 0.74 6.17 -51.93 -0.32 0.42 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 31 H 0.00 -0.06 7.57 -51.93 -0.39 -0.45 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.13 1.24 6.11 -52.49 -0.32 0.92 16 34 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.13 6.11 -52.49 -0.32 0.81 16 LS Contribution 311.78 15.07 4.70 4.70 Total: -1.00 -31.92 311.78 -6.27 -38.19 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.54 Total: -3.74 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -2.46 Total: -7.71 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 1.02 Total: -39.48 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.32 Total: -8.14 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.67 Total: 16.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.92 -6.27 -38.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385294632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.810 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds