Wall clock time and date at job start Mon Mar 30 2020 04:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.52998 * 109.47058 * 270.00111 * 3 2 1 5 5 O 1.42896 * 109.47237 * 65.00010 * 4 3 2 6 6 C 1.42905 * 113.99931 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46820 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00470 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99482 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99865 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00445 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47274 * 89.99324 * 11 9 7 13 13 H 1.48500 * 109.47303 * 210.00091 * 11 9 7 14 14 H 1.48504 * 109.47049 * 329.99669 * 11 9 7 15 15 C 1.39185 * 119.99958 * 179.97438 * 2 1 3 16 16 C 1.39179 * 119.92515 * 0.02562 * 15 2 1 17 17 C 1.37650 * 120.07100 * 179.97438 * 16 15 2 18 18 C 1.39799 * 119.92913 * 0.02562 * 17 16 15 19 19 C 1.43205 * 120.07701 * 179.97438 * 18 17 16 20 20 N 6.73122 * 120.00063 * 180.02562 * 2 1 3 21 21 C 1.39813 * 119.84996 * 0.27424 * 18 17 16 22 22 C 1.37655 * 119.92146 * 359.44481 * 21 18 17 23 23 H 1.09003 * 109.46925 * 269.99849 * 1 2 3 24 24 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 25 25 H 1.09003 * 109.47307 * 149.99910 * 1 2 3 26 26 H 1.08996 * 109.47153 * 29.99982 * 3 2 1 27 27 H 1.09002 * 109.47094 * 150.00008 * 3 2 1 28 28 H 1.08997 * 109.47032 * 185.00174 * 4 3 2 29 29 H 1.09007 * 109.47018 * 305.00175 * 4 3 2 30 30 H 1.09004 * 109.46729 * 299.99921 * 6 5 4 31 31 H 1.08999 * 109.47023 * 59.99865 * 6 5 4 32 32 H 0.96999 * 120.00164 * 180.02562 * 10 9 7 33 33 H 1.07994 * 119.96165 * 359.95647 * 16 15 2 34 34 H 1.08008 * 120.03484 * 179.97438 * 17 16 15 35 35 H 1.08001 * 120.04125 * 179.72493 * 21 18 17 36 36 H 1.07991 * 119.96081 * 180.27907 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 8 1.2059 1.9935 -2.0813 6 6 1.3323 2.4164 -3.4405 7 6 -0.0359 2.6854 -4.0121 8 1 -0.9141 2.5476 -3.3988 9 6 -0.1665 3.1083 -5.3179 10 7 -1.3605 3.3436 -5.8167 11 14 1.3524 3.3474 -6.3787 12 1 1.6693 2.0788 -7.0825 13 1 1.0960 4.4166 -7.3767 14 1 2.4997 3.7368 -5.5199 15 6 2.1609 -1.2054 0.0005 16 6 1.4634 -2.4098 0.0005 17 6 2.1486 -3.6036 0.0005 18 6 3.5466 -3.6055 0.0011 19 6 4.2627 -4.8456 0.0016 20 7 4.8307 -5.8294 -0.0026 21 6 4.2441 -2.3938 0.0074 22 6 3.5527 -1.2035 0.0016 23 1 -0.3633 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1385 0.5138 28 1 3.0731 2.6064 -1.4438 29 1 2.9641 0.9131 -1.9816 30 1 1.9300 3.3270 -3.4836 31 1 1.8206 1.6335 -4.0207 32 1 -1.4524 3.6408 -6.7354 33 1 0.3835 -2.4077 0.0008 34 1 1.6068 -4.5380 0.0010 35 1 5.3241 -2.3916 0.0124 36 1 4.0908 -0.2672 0.0019 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385294632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:36 Heat of formation + Delta-G solvation = -1.713035 kcal Electronic energy + Delta-G solvation = -18372.352148 eV Core-core repulsion = 15435.227284 eV Total energy + Delta-G solvation = -2937.124865 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74628 -38.88195 -37.79369 -36.55592 -34.84117 -32.47230 -31.66461 -30.66666 -29.54569 -26.93436 -24.57086 -23.91315 -23.13363 -22.02761 -19.74331 -19.07428 -18.11380 -17.28088 -17.10459 -16.47131 -16.18098 -15.67650 -15.58038 -14.97910 -14.87382 -14.72841 -14.56592 -14.45302 -14.06513 -13.71468 -13.46797 -13.19371 -13.14369 -12.93096 -12.82893 -12.63099 -12.48701 -12.34864 -11.83438 -11.64551 -11.31856 -10.92486 -10.71491 -10.31846 -9.90908 -8.36986 -8.21684 -6.44057 0.11554 0.56400 1.33784 1.35546 1.46022 1.75953 2.08704 2.19680 2.28922 2.96323 3.05029 3.11872 3.14584 3.92307 4.01411 4.17201 4.24077 4.39414 4.49555 4.54027 4.57401 4.62099 4.66551 4.71013 4.79079 4.95982 5.03320 5.11991 5.13652 5.29900 5.36116 5.45774 5.55235 5.81929 5.94507 6.28774 6.52470 6.60368 6.62881 6.77412 7.20596 8.79798 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.004121 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.635548 B = 6793.484451 C = 7154.397966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.613 5.613 3 C 0.125 3.875 4 C 0.027 3.973 5 O -0.397 6.397 6 C 0.182 3.818 7 C -0.540 4.540 8 H 0.034 0.966 9 C 0.013 3.987 10 N -0.942 5.942 11 Si 0.950 3.050 12 H -0.264 1.264 13 H -0.275 1.275 14 H -0.244 1.244 15 C 0.242 3.758 16 C -0.214 4.214 17 C -0.013 4.013 18 C -0.124 4.124 19 C 0.290 3.710 20 N -0.492 5.492 21 C -0.011 4.011 22 C -0.211 4.211 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.011 0.989 31 H 0.003 0.997 32 H 0.272 0.728 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.425 -6.895 14.025 18.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.318 5.318 3 C 0.002 3.998 4 C -0.051 4.051 5 O -0.316 6.316 6 C 0.106 3.894 7 C -0.578 4.578 8 H 0.052 0.948 9 C -0.185 4.185 10 N -0.581 5.581 11 Si 0.772 3.228 12 H -0.189 1.189 13 H -0.200 1.200 14 H -0.167 1.167 15 C 0.135 3.865 16 C -0.236 4.236 17 C -0.034 4.034 18 C -0.130 4.130 19 C -0.022 4.022 20 N -0.169 5.169 21 C -0.032 4.032 22 C -0.233 4.233 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.142 0.858 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.020 0.980 32 H 0.081 0.919 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.885 -8.154 13.971 19.498 hybrid contribution -0.099 0.605 -1.023 1.193 sum 10.786 -7.549 12.948 18.466 Atomic orbital electron populations 1.21755 0.78807 1.03091 1.01599 1.46640 1.05917 1.03210 1.76056 1.21739 0.99286 0.84880 0.93851 1.23255 0.87101 0.99596 0.95176 1.87848 1.29890 1.87674 1.26228 1.20248 0.95641 0.93209 0.80287 1.21148 0.92781 1.46154 0.97695 0.94775 1.25791 0.99822 0.94020 0.98827 1.70026 1.24843 1.46949 1.16323 0.85677 0.79404 0.78970 0.78724 1.18854 1.20030 1.16743 1.18412 0.92072 0.86170 0.89827 1.20775 1.00837 0.90432 1.11558 1.21000 0.91599 0.98558 0.92268 1.15853 0.92431 0.86374 1.18337 1.25972 0.92237 0.92607 0.91420 1.81240 1.10301 1.12395 1.12987 1.21037 1.00514 0.89608 0.92061 1.20788 0.91584 0.99412 1.11518 0.91297 0.92381 0.91167 0.89293 0.85751 0.91670 0.93772 0.97111 0.97962 0.91902 0.84247 0.83904 0.83441 0.83381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.09 9.99 127.77 1.28 3.37 16 2 N -0.61 -13.68 2.96 -722.14 -2.14 -15.82 16 3 C 0.13 2.54 5.55 86.38 0.48 3.02 16 4 C 0.03 0.74 6.28 71.98 0.45 1.19 16 5 O -0.40 -16.29 9.15 -148.98 -1.36 -17.65 16 6 C 0.18 8.58 4.76 71.24 0.34 8.92 16 7 C -0.54 -31.46 9.99 25.60 0.26 -31.20 16 8 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 9 C 0.01 0.77 5.47 84.65 0.46 1.24 16 10 N -0.94 -57.94 13.96 21.45 0.30 -57.65 16 11 Si 0.95 42.27 27.47 68.60 1.88 44.15 16 12 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 13 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 15 C 0.24 4.97 6.55 38.43 0.25 5.22 16 16 C -0.21 -4.10 9.18 22.36 0.21 -3.89 16 17 C -0.01 -0.23 9.74 22.51 0.22 -0.01 16 18 C -0.12 -2.33 5.74 -21.27 -0.12 -2.46 16 19 C 0.29 6.60 15.33 88.33 1.35 7.96 16 20 N -0.49 -13.61 18.54 19.00 0.35 -13.26 16 21 C -0.01 -0.18 9.75 22.51 0.22 0.04 16 22 C -0.21 -3.61 9.18 22.36 0.21 -3.40 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 1.73 7.11 -2.39 -0.02 1.71 16 25 H 0.07 1.56 6.17 -2.39 -0.01 1.55 16 26 H 0.09 1.78 8.07 -2.39 -0.02 1.76 16 27 H 0.12 1.61 6.17 -2.39 -0.01 1.60 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.01 0.50 7.20 -2.39 -0.02 0.49 16 31 H 0.00 0.12 7.57 -2.39 -0.02 0.10 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.14 2.43 6.11 -2.91 -0.02 2.41 16 34 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.15 1.96 6.11 -2.91 -0.02 1.94 16 Total: -1.00 -70.67 311.78 5.67 -65.00 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.03 Total: 5.21 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.60 Total: -10.00 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -1.48 Total: -86.72 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -1.36 Total: -17.65 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.15 kcal Total: -70.67 5.67 -65.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385294632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.291 kcal (2) G-P(sol) polarization free energy of solvation -70.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds