Wall clock time and date at job start Mon Mar 30 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47255 * 2 1 4 4 S 1.81397 * 109.47256 * 179.97438 * 3 2 1 5 5 O 1.42100 * 109.46900 * 289.05710 * 4 3 2 6 6 N 1.65601 * 103.00110 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00125 * 180.02562 * 6 4 3 8 8 C 1.53081 * 109.45080 * 94.78693 * 7 6 4 9 9 C 1.53190 * 109.29209 * 181.24433 * 8 7 6 10 10 N 1.46921 * 108.89311 * 305.57883 * 9 8 7 11 11 C 1.36940 * 120.63187 * 233.51481 * 10 9 8 12 12 H 1.08001 * 120.00319 * 152.61971 * 11 10 9 13 13 C 1.38813 * 119.99903 * 332.62203 * 11 10 9 14 14 N 1.31624 * 120.00070 * 159.34992 * 13 11 10 15 15 Si 1.86800 * 120.00077 * 339.35529 * 13 11 10 16 16 H 1.48494 * 109.47321 * 92.87851 * 15 13 11 17 17 H 1.48501 * 109.47194 * 212.88430 * 15 13 11 18 18 H 1.48509 * 109.46983 * 332.87654 * 15 13 11 19 19 C 1.46923 * 118.74178 * 53.54201 * 10 9 8 20 20 C 1.53035 * 109.46006 * 214.99873 * 7 6 4 21 21 H 1.08998 * 109.47598 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47210 * 299.99576 * 1 2 3 23 23 H 1.08997 * 109.47189 * 59.99761 * 1 2 3 24 24 H 1.08993 * 109.46606 * 239.99968 * 2 1 3 25 25 H 1.08997 * 109.47189 * 120.00239 * 2 1 3 26 26 H 1.09006 * 109.47156 * 60.00193 * 3 2 1 27 27 H 1.09002 * 109.47213 * 300.00689 * 3 2 1 28 28 H 0.97002 * 119.99708 * 359.97438 * 6 4 3 29 29 H 1.08996 * 109.45705 * 334.97612 * 7 6 4 30 30 H 1.08992 * 109.38800 * 61.36852 * 8 7 6 31 31 H 1.09002 * 109.61927 * 301.26130 * 8 7 6 32 32 H 1.08999 * 109.58729 * 185.71870 * 9 8 7 33 33 H 1.09004 * 109.58886 * 65.43758 * 9 8 7 34 34 H 0.97001 * 119.99914 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.59094 * 66.17180 * 19 10 9 36 36 H 1.09001 * 109.59077 * 186.46452 * 19 10 9 37 37 H 1.09002 * 109.49848 * 58.66419 * 20 7 6 38 38 H 1.08999 * 109.49849 * 298.56228 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 3.8540 1.4424 0.0008 5 8 4.3271 1.0052 1.2673 6 7 4.2266 3.0560 0.0014 7 6 5.6275 3.4843 0.0016 8 6 6.0798 3.7491 -1.4368 9 6 7.5537 4.1667 -1.4351 10 7 7.7237 5.3085 -0.5263 11 6 8.3211 6.4620 -0.9594 12 1 8.0705 7.4060 -0.4984 13 6 9.2489 6.4181 -1.9910 14 7 9.5194 7.5067 -2.6797 15 14 10.1135 4.8140 -2.4019 16 1 9.3591 4.1033 -3.4652 17 1 11.4899 5.1018 -2.8795 18 1 10.1792 3.9619 -1.1874 19 6 7.2410 5.1890 0.8562 20 6 5.7695 4.7634 0.8297 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8932 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 3.5171 3.7175 0.0009 29 1 6.2470 2.6998 0.4360 30 1 5.4755 4.5490 -1.8646 31 1 5.9588 2.8434 -2.0311 32 1 7.8532 4.4541 -2.4430 33 1 8.1691 3.3339 -1.0946 34 1 10.1674 7.4759 -3.4008 35 1 7.8288 4.4387 1.3850 36 1 7.3363 6.1504 1.3610 37 1 5.4260 4.5779 1.8474 38 1 5.1698 5.5555 0.3814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385586229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:39 Heat of formation + Delta-G solvation = -27.226941 kcal Electronic energy + Delta-G solvation = -17961.554697 eV Core-core repulsion = 15158.767418 eV Total energy + Delta-G solvation = -2802.787279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.11942 -35.51753 -34.86331 -34.44815 -31.83871 -30.37444 -29.46279 -27.53195 -24.64263 -22.80488 -22.12057 -21.44690 -19.69602 -18.12517 -16.94105 -16.24473 -15.76257 -15.60982 -14.94370 -14.26200 -14.15532 -13.77939 -13.71320 -13.44633 -13.20726 -12.91009 -12.52883 -12.27550 -12.10549 -11.97407 -11.74175 -11.54298 -11.07149 -11.01399 -10.80582 -10.56817 -10.50105 -10.15924 -10.04982 -9.74680 -9.50421 -9.04872 -8.60665 -7.90470 -6.97201 -5.93875 -3.29584 1.82625 2.63655 3.32529 3.50135 3.53597 4.03527 4.54218 4.58846 4.66867 4.95879 4.98011 5.18142 5.21189 5.33628 5.41300 5.45488 5.49654 5.65621 5.71805 5.79181 5.80338 5.87099 5.93705 6.08321 6.20182 6.29460 6.43459 6.59069 6.64534 6.71391 6.72654 6.97498 7.42039 7.97573 8.33790 8.95319 9.73189 10.11023 11.22168 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.042606 B = 0.004490 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.025311 B = 6234.728573 C = 6391.847757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.487 4.487 4 S 1.485 4.515 5 O -0.903 6.903 6 N -1.018 6.018 7 C 0.173 3.827 8 C -0.144 4.144 9 C 0.124 3.876 10 N -0.606 5.606 11 C -0.259 4.259 12 H 0.085 0.915 13 C 0.022 3.978 14 N -0.909 5.909 15 Si 0.883 3.117 16 H -0.287 1.287 17 H -0.304 1.304 18 H -0.270 1.270 19 C 0.150 3.850 20 C -0.138 4.138 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.112 0.888 28 H 0.389 0.611 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.282 -13.977 0.822 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.622 4.622 4 S 1.587 4.413 5 O -0.886 6.886 6 N -0.769 5.769 7 C 0.065 3.935 8 C -0.186 4.186 9 C -0.002 4.002 10 N -0.330 5.330 11 C -0.388 4.388 12 H 0.102 0.898 13 C -0.177 4.177 14 N -0.553 5.553 15 Si 0.713 3.287 16 H -0.215 1.215 17 H -0.232 1.232 18 H -0.195 1.195 19 C 0.023 3.977 20 C -0.179 4.179 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.218 0.782 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.352 -14.755 0.819 20.600 hybrid contribution -0.788 0.536 1.435 1.722 sum -15.140 -14.219 2.253 20.892 Atomic orbital electron populations 1.21768 0.95326 1.01601 1.01918 1.21027 0.96731 0.93697 1.02569 1.28203 1.24543 1.02421 1.07038 1.70455 0.83268 0.80670 1.06914 1.92983 1.72733 1.75300 1.47597 1.53037 1.11045 1.20832 1.92002 1.20573 0.80431 0.96649 0.95843 1.22544 0.99235 1.00997 0.95790 1.21361 0.92993 0.90181 0.95653 1.44384 1.68913 1.13807 1.05895 1.18927 1.17326 0.85450 1.17054 0.89752 1.25287 0.97971 0.96502 0.97893 1.69842 1.35937 1.28160 1.21318 0.86948 0.78814 0.84750 0.78163 1.21458 1.23195 1.19529 1.20903 0.90787 0.99327 0.86675 1.22318 1.00034 0.96828 0.98683 0.92554 0.93012 0.92424 0.90715 0.91804 0.90017 0.86979 0.78205 0.91193 0.91136 0.92289 0.90629 0.95676 0.92781 0.95879 0.91650 0.92673 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.10 -0.81 5.94 -26.73 -0.16 -0.97 16 3 C -0.49 -4.25 5.98 37.16 0.22 -4.02 16 4 S 1.49 16.13 13.89 -107.50 -1.49 14.63 16 5 O -0.90 -16.05 17.93 -35.23 -0.63 -16.68 16 6 N -1.02 -12.86 5.38 -4.84 -0.03 -12.88 16 7 C 0.17 2.74 2.78 -67.87 -0.19 2.55 16 8 C -0.14 -2.38 5.70 -26.59 -0.15 -2.54 16 9 C 0.12 2.64 4.20 -3.71 -0.02 2.62 16 10 N -0.61 -14.34 2.77 -172.32 -0.48 -14.82 16 11 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 12 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 13 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 14 N -0.91 -27.74 13.97 55.49 0.78 -26.97 16 15 Si 0.88 22.13 24.34 -169.99 -4.14 17.99 16 16 H -0.29 -6.81 6.62 56.52 0.37 -6.43 16 17 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 18 H -0.27 -6.70 6.64 56.52 0.38 -6.32 16 19 C 0.15 3.02 6.52 -3.71 -0.02 2.99 16 20 C -0.14 -2.35 5.61 -26.61 -0.15 -2.50 16 21 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 27 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.39 4.36 8.64 -34.47 -0.30 4.06 16 29 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.74 4.50 -51.93 -0.23 1.51 16 33 H 0.03 0.53 7.07 -51.93 -0.37 0.16 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -35.63 310.68 -8.06 -43.68 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.41 Total: -0.27 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -0.34 Total: -9.37 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.27 Total: -54.67 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.63 Total: -16.68 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Atomic # 16 Polarization: 16.13 SS G_CDS: -1.49 Total: 14.63 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.63 -8.06 -43.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385586229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.455 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds