Wall clock time and date at job start Mon Mar 30 2020 05:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47255 * 2 1 4 4 S 1.81397 * 109.47256 * 179.97438 * 3 2 1 5 5 O 1.42100 * 109.46900 * 289.05710 * 4 3 2 6 6 N 1.65601 * 103.00110 * 180.02562 * 4 3 2 7 7 C 1.46499 * 120.00125 * 180.02562 * 6 4 3 8 8 C 1.53081 * 109.45080 * 94.78693 * 7 6 4 9 9 C 1.53190 * 109.29209 * 181.24433 * 8 7 6 10 10 N 1.46921 * 108.89311 * 305.57883 * 9 8 7 11 11 C 1.36940 * 120.63187 * 233.51481 * 10 9 8 12 12 H 1.08001 * 120.00319 * 152.61971 * 11 10 9 13 13 C 1.38813 * 119.99903 * 332.62203 * 11 10 9 14 14 N 1.31624 * 120.00070 * 159.34992 * 13 11 10 15 15 Si 1.86800 * 120.00077 * 339.35529 * 13 11 10 16 16 H 1.48494 * 109.47321 * 92.87851 * 15 13 11 17 17 H 1.48501 * 109.47194 * 212.88430 * 15 13 11 18 18 H 1.48509 * 109.46983 * 332.87654 * 15 13 11 19 19 C 1.46923 * 118.74178 * 53.54201 * 10 9 8 20 20 C 1.53035 * 109.46006 * 214.99873 * 7 6 4 21 21 H 1.08998 * 109.47598 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47210 * 299.99576 * 1 2 3 23 23 H 1.08997 * 109.47189 * 59.99761 * 1 2 3 24 24 H 1.08993 * 109.46606 * 239.99968 * 2 1 3 25 25 H 1.08997 * 109.47189 * 120.00239 * 2 1 3 26 26 H 1.09006 * 109.47156 * 60.00193 * 3 2 1 27 27 H 1.09002 * 109.47213 * 300.00689 * 3 2 1 28 28 H 0.97002 * 119.99708 * 359.97438 * 6 4 3 29 29 H 1.08996 * 109.45705 * 334.97612 * 7 6 4 30 30 H 1.08992 * 109.38800 * 61.36852 * 8 7 6 31 31 H 1.09002 * 109.61927 * 301.26130 * 8 7 6 32 32 H 1.08999 * 109.58729 * 185.71870 * 9 8 7 33 33 H 1.09004 * 109.58886 * 65.43758 * 9 8 7 34 34 H 0.97001 * 119.99914 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.59094 * 66.17180 * 19 10 9 36 36 H 1.09001 * 109.59077 * 186.46452 * 19 10 9 37 37 H 1.09002 * 109.49848 * 58.66419 * 20 7 6 38 38 H 1.08999 * 109.49849 * 298.56228 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 3.8540 1.4424 0.0008 5 8 4.3271 1.0052 1.2673 6 7 4.2266 3.0560 0.0014 7 6 5.6275 3.4843 0.0016 8 6 6.0798 3.7491 -1.4368 9 6 7.5537 4.1667 -1.4351 10 7 7.7237 5.3085 -0.5263 11 6 8.3211 6.4620 -0.9594 12 1 8.0705 7.4060 -0.4984 13 6 9.2489 6.4181 -1.9910 14 7 9.5194 7.5067 -2.6797 15 14 10.1135 4.8140 -2.4019 16 1 9.3591 4.1033 -3.4652 17 1 11.4899 5.1018 -2.8795 18 1 10.1792 3.9619 -1.1874 19 6 7.2410 5.1890 0.8562 20 6 5.7695 4.7634 0.8297 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8932 -0.5138 -0.8899 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 3.5171 3.7175 0.0009 29 1 6.2470 2.6998 0.4360 30 1 5.4755 4.5490 -1.8646 31 1 5.9588 2.8434 -2.0311 32 1 7.8532 4.4541 -2.4430 33 1 8.1691 3.3339 -1.0946 34 1 10.1674 7.4759 -3.4008 35 1 7.8288 4.4387 1.3850 36 1 7.3363 6.1504 1.3610 37 1 5.4260 4.5779 1.8474 38 1 5.1698 5.5555 0.3814 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385586229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:39 Heat of formation + Delta-G solvation = -54.374879 kcal Electronic energy + Delta-G solvation = -17962.731920 eV Core-core repulsion = 15158.767418 eV Total energy + Delta-G solvation = -2803.964502 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.63931 -36.68009 -36.04179 -35.46199 -33.77287 -31.91160 -31.00563 -28.21861 -26.45453 -24.36018 -23.45171 -22.42085 -21.17385 -19.22977 -18.75268 -17.48080 -17.18961 -16.41379 -16.28952 -15.90783 -15.35408 -15.24318 -15.08659 -14.62588 -14.41132 -14.14319 -13.97944 -13.85900 -13.39815 -13.05950 -12.97688 -12.62374 -12.51053 -12.19631 -12.13373 -11.96526 -11.72828 -11.70732 -11.62465 -11.42522 -11.11754 -10.70503 -10.19309 -8.94521 -8.88706 -8.13707 -5.46169 0.92826 1.33777 1.46846 1.55958 1.74328 2.45233 3.09237 3.12479 3.35875 3.84478 3.92919 4.02445 4.05945 4.22828 4.36799 4.39120 4.46765 4.55371 4.60116 4.69170 4.83046 4.88085 4.89657 4.99213 5.07239 5.13691 5.18297 5.21813 5.25635 5.33480 5.37806 5.56558 5.88992 6.14749 6.42201 6.94071 7.64497 8.04791 9.06247 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.042606 B = 0.004490 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.025311 B = 6234.728573 C = 6391.847757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.475 4.475 4 S 1.528 4.472 5 O -0.970 6.970 6 N -1.013 6.013 7 C 0.179 3.821 8 C -0.134 4.134 9 C 0.114 3.886 10 N -0.620 5.620 11 C -0.251 4.251 12 H 0.049 0.951 13 C -0.035 4.035 14 N -0.958 5.958 15 Si 0.948 3.052 16 H -0.262 1.262 17 H -0.313 1.313 18 H -0.265 1.265 19 C 0.145 3.855 20 C -0.129 4.129 21 H 0.065 0.935 22 H 0.039 0.961 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.144 0.856 28 H 0.399 0.601 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.262 0.738 35 H 0.029 0.971 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.080 -16.401 -0.058 23.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.612 4.612 4 S 1.632 4.368 5 O -0.955 6.955 6 N -0.764 5.764 7 C 0.071 3.929 8 C -0.175 4.175 9 C -0.011 4.011 10 N -0.345 5.345 11 C -0.381 4.381 12 H 0.066 0.934 13 C -0.230 4.230 14 N -0.604 5.604 15 Si 0.776 3.224 16 H -0.188 1.188 17 H -0.242 1.242 18 H -0.190 1.190 19 C 0.019 3.981 20 C -0.169 4.169 21 H 0.084 0.916 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.122 0.878 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.162 0.838 28 H 0.228 0.772 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.171 -17.205 -0.041 23.611 hybrid contribution -0.381 1.329 1.764 2.241 sum -16.551 -15.876 1.723 22.999 Atomic orbital electron populations 1.21782 0.94533 1.02352 1.02027 1.21163 0.97487 0.93072 1.03134 1.28081 1.21837 1.03422 1.07890 1.69758 0.83994 0.78571 1.04441 1.92887 1.75615 1.76575 1.50388 1.52823 1.09982 1.21840 1.91755 1.20309 0.82020 0.95554 0.95061 1.22428 0.95576 1.02692 0.96831 1.21490 0.96395 0.89207 0.94007 1.44504 1.68979 1.13294 1.07742 1.18852 1.17097 0.85941 1.16176 0.93357 1.25924 0.98878 0.99867 0.98319 1.69973 1.37193 1.30672 1.22610 0.85898 0.76980 0.80833 0.78688 1.18795 1.24226 1.18967 1.21020 0.92874 0.99191 0.84987 1.22173 0.97481 0.97612 0.99665 0.91598 0.94145 0.91078 0.87772 0.93803 0.91598 0.83753 0.77166 0.92018 0.91479 0.88123 0.92458 0.94897 0.92905 0.95345 0.92614 0.91747 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.11 -1.43 5.94 30.59 0.18 -1.25 16 3 C -0.48 -6.72 5.98 71.98 0.43 -6.29 16 4 S 1.53 28.96 13.89 -56.49 -0.78 28.17 16 5 O -0.97 -33.20 17.93 -148.98 -2.67 -35.87 16 6 N -1.01 -22.52 5.38 -169.23 -0.91 -23.43 16 7 C 0.18 5.23 2.78 45.03 0.13 5.35 16 8 C -0.13 -4.02 5.70 30.68 0.17 -3.84 16 9 C 0.11 4.61 4.20 86.36 0.36 4.97 16 10 N -0.62 -29.09 2.77 -699.09 -1.94 -31.03 16 11 C -0.25 -14.29 10.03 84.03 0.84 -13.44 16 12 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 13 C -0.04 -2.05 5.23 84.86 0.44 -1.61 16 14 N -0.96 -60.03 13.97 21.65 0.30 -59.73 16 15 Si 0.95 45.76 24.34 68.60 1.67 47.43 16 16 H -0.26 -11.50 6.62 99.48 0.66 -10.84 16 17 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 18 H -0.27 -12.41 6.64 99.48 0.66 -11.75 16 19 C 0.15 5.78 6.52 86.37 0.56 6.34 16 20 C -0.13 -4.19 5.61 30.67 0.17 -4.02 16 21 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 22 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.40 7.60 8.64 -96.74 -0.84 6.76 16 29 H 0.06 1.96 7.93 -2.39 -0.02 1.94 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 2.52 4.50 -2.39 -0.01 2.51 16 33 H 0.03 1.29 7.07 -2.38 -0.02 1.27 16 34 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -78.94 310.68 -0.22 -79.16 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.10 Total: 10.07 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.01 Total: -14.77 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -2.54 Total: -114.19 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -2.67 Total: -35.87 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.43 kcal Atomic # 16 Polarization: 28.96 SS G_CDS: -0.78 Total: 28.17 kcal Total: -78.94 -0.22 -79.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385586229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.788 kcal (2) G-P(sol) polarization free energy of solvation -78.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds