Wall clock time and date at job start Mon Mar 30 2020 05:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47201 * 2 1 4 4 S 1.81399 * 109.47491 * 119.99919 * 2 1 3 5 5 O 1.42107 * 109.46941 * 310.94731 * 4 2 1 6 6 N 1.65602 * 102.99856 * 59.99683 * 4 2 1 7 7 C 1.46500 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53065 * 109.45413 * 94.79597 * 7 6 4 9 9 C 1.53192 * 109.29648 * 181.24177 * 8 7 6 10 10 N 1.46922 * 108.89269 * 305.57538 * 9 8 7 11 11 C 1.36942 * 120.62796 * 233.51528 * 10 9 8 12 12 H 1.08007 * 119.99636 * 151.83092 * 11 10 9 13 13 C 1.38806 * 120.00203 * 331.83144 * 11 10 9 14 14 N 1.31624 * 120.00191 * 343.08250 * 13 11 10 15 15 Si 1.86800 * 120.00146 * 163.07925 * 13 11 10 16 16 H 1.48503 * 109.47195 * 89.99708 * 15 13 11 17 17 H 1.48498 * 109.47355 * 210.00264 * 15 13 11 18 18 H 1.48504 * 109.46850 * 330.00278 * 15 13 11 19 19 C 1.46924 * 118.73925 * 53.53382 * 10 9 8 20 20 C 1.53049 * 109.45577 * 215.00277 * 7 6 4 21 21 H 1.08995 * 109.46744 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46706 * 299.99780 * 1 2 3 23 23 H 1.08994 * 109.46824 * 60.00046 * 1 2 3 24 24 H 1.09001 * 109.47423 * 240.00091 * 2 1 3 25 25 H 1.08998 * 109.47224 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46910 * 299.99749 * 3 2 1 27 27 H 1.08993 * 109.47078 * 59.99987 * 3 2 1 28 28 H 0.97002 * 120.00067 * 0.02562 * 6 4 2 29 29 H 1.08992 * 109.46107 * 334.97162 * 7 6 4 30 30 H 1.09005 * 109.39523 * 61.36241 * 8 7 6 31 31 H 1.09004 * 109.62174 * 301.25928 * 8 7 6 32 32 H 1.09003 * 109.58615 * 185.71531 * 9 8 7 33 33 H 1.08998 * 109.58372 * 65.43477 * 9 8 7 34 34 H 0.96995 * 120.00379 * 180.02562 * 14 13 11 35 35 H 1.09007 * 109.58325 * 66.18371 * 19 10 9 36 36 H 1.08996 * 109.58499 * 186.46256 * 19 10 9 37 37 H 1.09002 * 109.49883 * 58.66699 * 20 7 6 38 38 H 1.08993 * 109.49715 * 298.56552 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1348 -0.8551 1.4811 5 8 1.4649 -0.3483 2.6273 6 7 1.4983 -2.3753 1.3195 7 6 1.7629 -3.3925 2.3401 8 6 0.6144 -3.4106 3.3517 9 6 0.9096 -4.4536 4.4342 10 7 1.1698 -5.7479 3.7893 11 6 0.4710 -6.8655 4.1610 12 1 0.3078 -7.6616 3.4496 13 6 -0.0275 -6.9750 5.4518 14 7 0.4350 -6.1934 6.4045 15 14 -1.3549 -8.2317 5.8369 16 1 -0.7216 -9.5134 6.2388 17 1 -2.2046 -7.7300 6.9466 18 1 -2.1938 -8.4508 4.6312 19 6 2.1941 -5.8205 2.7386 20 6 1.8831 -4.7647 1.6730 21 1 -0.3632 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 0.9502 -2.5923 0.5492 29 1 2.6940 -3.1564 2.8552 30 1 -0.3135 -3.6686 2.8413 31 1 0.5159 -2.4271 3.8113 32 1 0.0508 -4.5429 5.0995 33 1 1.7853 -4.1481 5.0068 34 1 0.0869 -6.2702 7.3066 35 1 3.1755 -5.6253 3.1710 36 1 2.1846 -6.8124 2.2869 37 1 2.6872 -4.7425 0.9374 38 1 0.9438 -5.0124 1.1787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385852172.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:45 Heat of formation + Delta-G solvation = -28.932120 kcal Electronic energy + Delta-G solvation = -18268.798566 eV Core-core repulsion = 15465.937344 eV Total energy + Delta-G solvation = -2802.861222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -37.76148 -35.41240 -34.71737 -34.25403 -31.67744 -29.84679 -28.94553 -27.32553 -24.69437 -22.29109 -22.02686 -21.35786 -19.36105 -17.90301 -16.96332 -16.35803 -15.46209 -14.85053 -14.69166 -14.27565 -13.73693 -13.60555 -13.41103 -12.99876 -12.93625 -12.66434 -12.37788 -12.25712 -12.15746 -11.41705 -11.41092 -11.24895 -11.06105 -10.87199 -10.67298 -10.36940 -10.27863 -10.15660 -10.02092 -9.71057 -9.36603 -8.83296 -8.40461 -7.77251 -6.62146 -5.74199 -3.16890 1.98283 2.76179 3.39985 3.47009 3.49335 4.17403 4.53303 4.71233 4.76293 5.13351 5.31414 5.40398 5.43153 5.55061 5.56992 5.58924 5.73066 5.76644 5.86423 5.91035 5.93444 6.04650 6.21869 6.35051 6.57303 6.66894 6.74289 6.92407 7.00536 7.02551 7.42796 7.61059 7.74142 7.83740 8.50203 9.25835 9.89744 10.46286 11.34192 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.042650 B = 0.004631 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.344307 B = 6044.937544 C = 6166.301606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.459 4.459 3 C -0.125 4.125 4 S 1.488 4.512 5 O -0.889 6.889 6 N -1.018 6.018 7 C 0.177 3.823 8 C -0.155 4.155 9 C 0.172 3.828 10 N -0.593 5.593 11 C -0.254 4.254 12 H 0.065 0.935 13 C 0.002 3.998 14 N -0.902 5.902 15 Si 0.901 3.099 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.146 3.854 20 C -0.133 4.133 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.113 0.887 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.387 0.613 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.086 0.914 33 H 0.018 0.982 34 H 0.254 0.746 35 H 0.019 0.981 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 11.147 -14.617 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.573 4.573 3 C -0.183 4.183 4 S 1.588 4.412 5 O -0.873 6.873 6 N -0.770 5.770 7 C 0.070 3.930 8 C -0.196 4.196 9 C 0.046 3.954 10 N -0.316 5.316 11 C -0.383 4.383 12 H 0.082 0.918 13 C -0.196 4.196 14 N -0.546 5.546 15 Si 0.731 3.269 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.206 1.206 19 C 0.019 3.981 20 C -0.175 4.175 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.073 0.927 24 H 0.132 0.868 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.215 0.785 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.378 11.540 -13.477 19.215 hybrid contribution -3.235 -0.543 -0.292 3.293 sum 4.143 10.997 -13.769 18.102 Atomic orbital electron populations 1.21663 0.93520 1.02046 1.02450 1.28007 1.02844 1.06712 1.19780 1.21383 1.01029 0.93373 1.02561 1.70284 1.12557 0.77147 0.81245 1.93018 1.74784 1.76381 1.43098 1.53127 1.68771 1.23651 1.31441 1.20557 0.97605 0.87089 0.87740 1.22720 0.97929 1.00373 0.98620 1.20760 1.00431 0.82484 0.91743 1.44092 1.40469 1.05340 1.41693 1.19162 1.27765 0.97497 0.93908 0.91775 1.25045 1.00624 0.98668 0.95278 1.70033 1.42596 1.41349 1.00624 0.86325 0.81978 0.80981 0.77642 1.21377 1.21594 1.20562 1.20887 0.91778 0.96004 0.89444 1.22320 1.01070 0.95170 0.98897 0.92622 0.92161 0.92729 0.86834 0.91562 0.92154 0.92432 0.78468 0.91443 0.93112 0.92375 0.89587 0.96401 0.93644 0.96296 0.92580 0.92459 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.98 37.16 0.33 -1.27 16 2 C -0.46 -4.29 3.42 -26.73 -0.09 -4.38 16 3 C -0.12 -1.03 9.20 37.16 0.34 -0.69 16 4 S 1.49 17.15 13.39 -107.50 -1.44 15.71 16 5 O -0.89 -16.51 17.08 -35.23 -0.60 -17.11 16 6 N -1.02 -13.66 5.21 -4.84 -0.03 -13.69 16 7 C 0.18 3.01 2.78 -67.87 -0.19 2.82 16 8 C -0.16 -3.32 5.70 -26.60 -0.15 -3.47 16 9 C 0.17 4.34 5.30 -3.71 -0.02 4.32 16 10 N -0.59 -15.13 3.00 -172.32 -0.52 -15.64 16 11 C -0.25 -7.09 9.58 -15.06 -0.14 -7.23 16 12 H 0.06 1.75 7.89 -52.48 -0.41 1.33 16 13 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 14 N -0.90 -26.88 11.20 55.49 0.62 -26.26 16 15 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 20 C -0.13 -2.20 5.61 -26.61 -0.15 -2.35 16 21 H 0.05 0.65 7.07 -51.93 -0.37 0.29 16 22 H 0.06 0.84 7.99 -51.93 -0.42 0.43 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.39 4.68 7.63 -34.47 -0.26 4.42 16 29 H 0.07 1.12 7.99 -51.93 -0.41 0.70 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.31 7.52 -51.93 -0.39 0.92 16 32 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -35.21 312.58 -8.81 -44.03 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.35 Total: 0.46 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -0.18 Total: -9.30 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.08 Total: -55.59 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.60 Total: -17.11 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Atomic # 16 Polarization: 17.15 SS G_CDS: -1.44 Total: 15.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.21 -8.81 -44.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385852172.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.094 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds