Wall clock time and date at job start Mon Mar 30 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47201 * 2 1 4 4 S 1.81399 * 109.47491 * 119.99919 * 2 1 3 5 5 O 1.42107 * 109.46941 * 310.94731 * 4 2 1 6 6 N 1.65602 * 102.99856 * 59.99683 * 4 2 1 7 7 C 1.46500 * 119.99873 * 180.02562 * 6 4 2 8 8 C 1.53065 * 109.45413 * 94.79597 * 7 6 4 9 9 C 1.53192 * 109.29648 * 181.24177 * 8 7 6 10 10 N 1.46922 * 108.89269 * 305.57538 * 9 8 7 11 11 C 1.36942 * 120.62796 * 233.51528 * 10 9 8 12 12 H 1.08007 * 119.99636 * 151.83092 * 11 10 9 13 13 C 1.38806 * 120.00203 * 331.83144 * 11 10 9 14 14 N 1.31624 * 120.00191 * 343.08250 * 13 11 10 15 15 Si 1.86800 * 120.00146 * 163.07925 * 13 11 10 16 16 H 1.48503 * 109.47195 * 89.99708 * 15 13 11 17 17 H 1.48498 * 109.47355 * 210.00264 * 15 13 11 18 18 H 1.48504 * 109.46850 * 330.00278 * 15 13 11 19 19 C 1.46924 * 118.73925 * 53.53382 * 10 9 8 20 20 C 1.53049 * 109.45577 * 215.00277 * 7 6 4 21 21 H 1.08995 * 109.46744 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46706 * 299.99780 * 1 2 3 23 23 H 1.08994 * 109.46824 * 60.00046 * 1 2 3 24 24 H 1.09001 * 109.47423 * 240.00091 * 2 1 3 25 25 H 1.08998 * 109.47224 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46910 * 299.99749 * 3 2 1 27 27 H 1.08993 * 109.47078 * 59.99987 * 3 2 1 28 28 H 0.97002 * 120.00067 * 0.02562 * 6 4 2 29 29 H 1.08992 * 109.46107 * 334.97162 * 7 6 4 30 30 H 1.09005 * 109.39523 * 61.36241 * 8 7 6 31 31 H 1.09004 * 109.62174 * 301.25928 * 8 7 6 32 32 H 1.09003 * 109.58615 * 185.71531 * 9 8 7 33 33 H 1.08998 * 109.58372 * 65.43477 * 9 8 7 34 34 H 0.96995 * 120.00379 * 180.02562 * 14 13 11 35 35 H 1.09007 * 109.58325 * 66.18371 * 19 10 9 36 36 H 1.08996 * 109.58499 * 186.46256 * 19 10 9 37 37 H 1.09002 * 109.49883 * 58.66699 * 20 7 6 38 38 H 1.08993 * 109.49715 * 298.56552 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1348 -0.8551 1.4811 5 8 1.4649 -0.3483 2.6273 6 7 1.4983 -2.3753 1.3195 7 6 1.7629 -3.3925 2.3401 8 6 0.6144 -3.4106 3.3517 9 6 0.9096 -4.4536 4.4342 10 7 1.1698 -5.7479 3.7893 11 6 0.4710 -6.8655 4.1610 12 1 0.3078 -7.6616 3.4496 13 6 -0.0275 -6.9750 5.4518 14 7 0.4350 -6.1934 6.4045 15 14 -1.3549 -8.2317 5.8369 16 1 -0.7216 -9.5134 6.2388 17 1 -2.2046 -7.7300 6.9466 18 1 -2.1938 -8.4508 4.6312 19 6 2.1941 -5.8205 2.7386 20 6 1.8831 -4.7647 1.6730 21 1 -0.3632 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 0.9502 -2.5923 0.5492 29 1 2.6940 -3.1564 2.8552 30 1 -0.3135 -3.6686 2.8413 31 1 0.5159 -2.4271 3.8113 32 1 0.0508 -4.5429 5.0995 33 1 1.7853 -4.1481 5.0068 34 1 0.0869 -6.2702 7.3066 35 1 3.1755 -5.6253 3.1710 36 1 2.1846 -6.8124 2.2869 37 1 2.6872 -4.7425 0.9374 38 1 0.9438 -5.0124 1.1787 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385852172.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:44 Heat of formation + Delta-G solvation = -54.743579 kcal Electronic energy + Delta-G solvation = -18269.917835 eV Core-core repulsion = 15465.937344 eV Total energy + Delta-G solvation = -2803.980490 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.41519 -36.63994 -35.94296 -35.54640 -33.51714 -31.60627 -30.60468 -28.15769 -26.61803 -23.80643 -23.61303 -22.55545 -20.98885 -19.11600 -18.69696 -17.55454 -16.97012 -16.50507 -15.83608 -15.53280 -15.32618 -15.07631 -14.89079 -14.70345 -14.27275 -13.98406 -13.68127 -13.37588 -13.14355 -13.09100 -12.98599 -12.65448 -12.53636 -12.17628 -12.15417 -12.05553 -12.03957 -11.80264 -11.68188 -11.43616 -10.87654 -10.58649 -10.06635 -8.88300 -8.67307 -7.88058 -5.33673 1.01205 1.43926 1.46224 1.55448 1.78430 2.50133 3.19693 3.27210 3.70018 3.90395 3.95651 3.97322 4.20704 4.36968 4.39631 4.50969 4.53906 4.63536 4.71272 4.72648 4.87463 4.90493 5.02449 5.04928 5.14963 5.21576 5.25625 5.28630 5.37865 5.48585 5.52339 5.63931 5.72149 6.38324 6.49906 7.13367 7.86265 8.37889 9.18441 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.042650 B = 0.004631 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.344307 B = 6044.937544 C = 6166.301606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.445 4.445 3 C -0.131 4.131 4 S 1.529 4.471 5 O -0.962 6.962 6 N -1.010 6.010 7 C 0.185 3.815 8 C -0.142 4.142 9 C 0.182 3.818 10 N -0.612 5.612 11 C -0.263 4.263 12 H 0.071 0.929 13 C -0.055 4.055 14 N -0.938 5.938 15 Si 0.966 3.034 16 H -0.279 1.279 17 H -0.297 1.297 18 H -0.270 1.270 19 C 0.137 3.863 20 C -0.117 4.117 21 H 0.051 0.949 22 H 0.025 0.975 23 H 0.073 0.927 24 H 0.155 0.845 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.396 0.604 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.044 0.956 33 H -0.003 1.003 34 H 0.248 0.752 35 H 0.025 0.975 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.908 11.097 -17.946 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.562 4.562 3 C -0.189 4.189 4 S 1.632 4.368 5 O -0.946 6.946 6 N -0.761 5.761 7 C 0.076 3.924 8 C -0.183 4.183 9 C 0.055 3.945 10 N -0.335 5.335 11 C -0.393 4.393 12 H 0.089 0.911 13 C -0.250 4.250 14 N -0.584 5.584 15 Si 0.794 3.206 16 H -0.206 1.206 17 H -0.223 1.223 18 H -0.195 1.195 19 C 0.012 3.988 20 C -0.158 4.158 21 H 0.070 0.930 22 H 0.044 0.956 23 H 0.092 0.908 24 H 0.173 0.827 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.227 0.773 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.015 0.985 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.484 11.469 -16.838 22.069 hybrid contribution -3.556 -0.449 0.629 3.639 sum 4.927 11.020 -16.209 20.210 Atomic orbital electron populations 1.21713 0.95222 1.01599 1.01707 1.27896 1.01278 1.07693 1.19334 1.21492 1.03218 0.92126 1.02111 1.69526 1.11360 0.75555 0.80354 1.92928 1.76446 1.77867 1.47383 1.52886 1.68949 1.23586 1.30661 1.20308 0.95740 0.88766 0.87556 1.22529 0.99502 0.97660 0.98594 1.20452 0.97731 0.83985 0.92316 1.44338 1.41918 1.04566 1.42711 1.19561 1.27676 0.98050 0.93991 0.91132 1.25845 1.02867 1.00947 0.95313 1.70198 1.44068 1.43424 1.00702 0.85293 0.79255 0.78750 0.77271 1.20591 1.22329 1.19531 1.21155 0.90628 0.98006 0.89052 1.22147 1.02638 0.92857 0.98150 0.92985 0.95573 0.90849 0.82709 0.88340 0.90679 0.94870 0.77348 0.90536 0.94359 0.94317 0.93785 0.98451 0.94269 0.95736 0.91929 0.87528 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.98 71.98 0.65 -2.42 16 2 C -0.45 -6.81 3.42 30.60 0.10 -6.71 16 3 C -0.13 -1.75 9.20 71.98 0.66 -1.09 16 4 S 1.53 32.32 13.39 -56.49 -0.76 31.57 16 5 O -0.96 -36.10 17.08 -148.98 -2.54 -38.64 16 6 N -1.01 -24.63 5.21 -169.24 -0.88 -25.51 16 7 C 0.19 5.98 2.78 45.03 0.13 6.10 16 8 C -0.14 -6.19 5.70 30.68 0.17 -6.01 16 9 C 0.18 9.55 5.30 86.36 0.46 10.01 16 10 N -0.61 -31.48 3.00 -699.10 -2.09 -33.57 16 11 C -0.26 -14.79 9.58 84.03 0.81 -13.98 16 12 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 13 C -0.05 -3.16 4.92 84.86 0.42 -2.75 16 14 N -0.94 -58.03 11.20 21.65 0.24 -57.79 16 15 Si 0.97 46.27 29.59 68.60 2.03 48.30 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 19 C 0.14 5.40 6.52 86.36 0.56 5.96 16 20 C -0.12 -3.51 5.61 30.67 0.17 -3.33 16 21 H 0.05 1.12 7.07 -2.39 -0.02 1.10 16 22 H 0.03 0.72 7.99 -2.39 -0.02 0.70 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.16 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.40 8.27 7.63 -96.74 -0.74 7.53 16 29 H 0.08 2.39 7.99 -2.39 -0.02 2.37 16 30 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.04 1.82 7.52 -2.38 -0.02 1.80 16 32 H 0.04 2.65 6.06 -2.39 -0.01 2.64 16 33 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 37 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -80.52 312.58 0.41 -80.11 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.29 Total: 9.75 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 4.13 Total: -14.22 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -2.73 Total: -116.87 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -2.54 Total: -38.64 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: 32.32 SS G_CDS: -0.76 Total: 31.57 kcal Total: -80.52 0.41 -80.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385852172.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.366 kcal (2) G-P(sol) polarization free energy of solvation -80.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds