Wall clock time and date at job start Mon Mar 30 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00060 * 2 1 4 4 H 1.48496 * 109.47039 * 90.00353 * 3 2 1 5 5 H 1.48501 * 109.47024 * 210.00317 * 3 2 1 6 6 H 1.48499 * 109.47205 * 330.00000 * 3 2 1 7 7 C 1.37879 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00067 * 189.31399 * 7 2 1 9 9 C 1.50692 * 119.99955 * 9.31546 * 7 2 1 10 10 C 1.52997 * 115.55313 * 39.62160 * 9 7 2 11 11 N 1.46499 * 109.47372 * 174.49314 * 10 9 7 12 12 C 1.34749 * 120.04503 * 88.75374 * 11 10 9 13 13 N 1.30636 * 121.49464 * 179.97438 * 12 11 10 14 14 C 1.33524 * 121.50427 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.04043 * 179.97438 * 14 13 12 16 16 C 1.52991 * 117.50124 * 8.62300 * 15 14 13 17 17 C 1.53002 * 60.00273 * 252.50896 * 16 15 14 18 18 C 1.36193 * 119.90916 * 0.02562 * 14 13 12 19 19 C 1.35021 * 120.04147 * 268.48251 * 11 10 9 20 20 O 1.21990 * 120.70817 * 359.97438 * 19 11 10 21 21 C 1.53001 * 117.50050 * 253.91018 * 9 7 2 22 22 C 1.53001 * 60.00426 * 252.51515 * 21 9 7 23 23 H 0.97004 * 120.00044 * 354.97980 * 1 2 3 24 24 H 1.08996 * 109.47022 * 294.48975 * 10 9 7 25 25 H 1.08994 * 109.47133 * 54.49328 * 10 9 7 26 26 H 1.08001 * 119.25103 * 359.97438 * 12 11 10 27 27 H 1.08998 * 115.54522 * 154.33173 * 15 14 13 28 28 H 1.09002 * 117.50531 * 359.97438 * 16 15 14 29 29 H 1.09004 * 117.49946 * 145.02639 * 16 15 14 30 30 H 1.08996 * 117.49814 * 252.51086 * 17 16 15 31 31 H 1.09002 * 117.51455 * 107.47705 * 17 16 15 32 32 H 1.07999 * 120.70309 * 180.02562 * 18 14 13 33 33 H 1.09005 * 117.49892 * 0.02562 * 21 9 7 34 34 H 1.08998 * 117.50101 * 145.02184 * 21 9 7 35 35 H 1.09005 * 117.49248 * 252.51140 * 22 21 9 36 36 H 1.08996 * 117.50252 * 107.48684 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0739 -1.2003 0.1508 9 6 1.2659 -2.4904 -0.2124 10 6 0.1512 -2.4513 -1.2596 11 7 -0.3856 -3.8007 -1.4521 12 6 -1.4005 -4.2394 -0.6817 13 7 -1.9011 -5.4370 -0.8294 14 6 -1.4298 -6.2816 -1.7499 15 6 -2.0317 -7.6560 -1.8913 16 6 -3.3046 -7.9549 -1.0968 17 6 -1.9741 -8.5811 -0.6740 18 6 -0.4039 -5.8997 -2.5601 19 6 0.1323 -4.6046 -2.4053 20 8 1.0476 -4.2204 -3.1144 21 6 1.0604 -3.3936 1.0054 22 6 2.0648 -3.7886 -0.0791 23 1 -0.4850 0.8369 0.0735 24 1 -0.6446 -1.7891 -0.9186 25 1 0.5520 -2.0817 -2.2033 26 1 -1.8093 -3.5860 0.0748 27 1 -1.9336 -8.1131 -2.8759 28 1 -3.7066 -7.1577 -0.4715 29 1 -4.0442 -8.6089 -1.5587 30 1 -1.8386 -9.6469 -0.8578 31 1 -1.5007 -8.1957 0.2291 32 1 -0.0131 -6.5724 -3.3092 33 1 1.4591 -3.0499 1.9599 34 1 0.1308 -3.9600 1.0608 35 1 1.7958 -4.6148 -0.7372 36 1 3.1245 -3.7049 0.1618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395592121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:25 Heat of formation + Delta-G solvation = 59.547601 kcal Electronic energy + Delta-G solvation = -19540.514764 eV Core-core repulsion = 16606.046360 eV Total energy + Delta-G solvation = -2934.468404 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.44618 -38.11142 -36.83132 -36.28027 -33.51058 -32.31323 -30.64990 -27.34266 -25.71849 -24.23583 -23.90250 -22.35358 -21.26072 -20.67644 -19.40063 -17.72614 -16.86974 -16.75697 -16.07274 -15.48547 -15.21896 -14.70628 -14.28150 -13.88594 -13.57975 -13.25910 -12.64623 -12.50420 -12.27210 -11.95380 -11.71925 -11.51158 -11.14506 -11.07859 -10.89471 -10.57377 -10.55770 -10.33510 -10.04597 -9.72623 -9.55133 -9.27395 -9.14457 -8.88225 -8.25124 -7.94732 -6.29949 -4.30074 1.02443 2.26212 3.13553 3.21006 3.26607 3.31825 3.70851 4.17035 4.23095 4.24917 4.57789 4.80858 4.85042 5.01471 5.13535 5.20378 5.39434 5.55405 5.60823 5.71805 5.88965 5.96426 6.05449 6.15155 6.19527 6.21412 6.26126 6.52607 6.58901 6.69203 6.80489 6.92689 7.17459 7.28940 7.32921 7.70895 8.15329 8.20449 8.43617 8.67264 9.30933 10.76174 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.037746 B = 0.005299 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.616871 B = 5282.267008 C = 5404.411624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.482 4.482 8 H 0.067 0.933 9 C 0.046 3.954 10 C 0.118 3.882 11 N -0.507 5.507 12 C 0.390 3.610 13 N -0.560 5.560 14 C 0.207 3.793 15 C -0.120 4.120 16 C -0.156 4.156 17 C -0.160 4.160 18 C -0.303 4.303 19 C 0.514 3.486 20 O -0.539 6.539 21 C -0.204 4.204 22 C -0.203 4.203 23 H 0.267 0.733 24 H 0.136 0.864 25 H 0.089 0.911 26 H 0.203 0.797 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 -10.811 -0.504 12.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.133 4.133 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.208 1.208 7 C -0.520 4.520 8 H 0.085 0.915 9 C 0.045 3.955 10 C -0.001 4.001 11 N -0.220 5.220 12 C 0.107 3.893 13 N -0.285 5.285 14 C 0.085 3.915 15 C -0.139 4.139 16 C -0.193 4.193 17 C -0.197 4.197 18 C -0.329 4.329 19 C 0.314 3.686 20 O -0.417 6.417 21 C -0.242 4.242 22 C -0.240 4.240 23 H 0.077 0.923 24 H 0.154 0.846 25 H 0.107 0.893 26 H 0.219 0.781 27 H 0.138 0.862 28 H 0.129 0.871 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.162 0.838 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.170 -10.738 -0.669 12.929 hybrid contribution 1.170 0.983 -0.390 1.577 sum -6.000 -9.755 -1.058 11.501 Atomic orbital electron populations 1.69646 1.06073 1.27536 1.49664 1.24996 0.95011 0.99507 0.93819 0.86392 0.80000 0.82300 0.78326 1.20457 1.19567 1.20840 1.20500 0.93945 0.88400 1.49151 0.91509 1.19203 0.94078 0.90138 0.92081 1.22251 1.00135 0.76797 1.00956 1.47274 1.27963 1.18565 1.28193 1.24935 0.82851 0.91561 0.90000 1.68094 1.32680 1.02952 1.24788 1.20129 0.89749 0.93081 0.88504 1.20951 1.03369 0.91990 0.97572 1.22946 0.90257 1.03252 1.02877 1.22933 1.01364 0.97734 0.97664 1.22531 1.03945 0.98019 1.08385 1.17192 0.84292 0.86154 0.80951 1.90932 1.29317 1.76050 1.45429 1.23074 0.98632 1.06829 0.95623 1.22884 0.96934 1.00926 1.03301 0.92254 0.84614 0.89276 0.78109 0.86204 0.87105 0.88820 0.88473 0.88421 0.83824 0.89907 0.92043 0.91671 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.42 10.92 55.43 0.61 -21.82 16 2 C 0.07 1.75 5.27 -17.82 -0.09 1.66 16 3 Si 0.90 19.99 29.55 -169.99 -5.02 14.96 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.48 -12.58 9.02 -34.44 -0.31 -12.89 16 8 H 0.07 1.77 7.83 -52.48 -0.41 1.35 16 9 C 0.05 1.10 2.31 -155.66 -0.36 0.74 16 10 C 0.12 2.64 4.89 -4.04 -0.02 2.62 16 11 N -0.51 -9.89 1.87 -121.11 -0.23 -10.11 16 12 C 0.39 6.45 9.29 -90.53 -0.84 5.61 16 13 N -0.56 -8.81 9.41 -10.70 -0.10 -8.91 16 14 C 0.21 3.18 6.43 -82.59 -0.53 2.65 16 15 C -0.12 -1.42 6.03 -91.77 -0.55 -1.98 16 16 C -0.16 -1.60 10.03 -26.73 -0.27 -1.87 16 17 C -0.16 -1.66 10.24 -26.73 -0.27 -1.93 16 18 C -0.30 -5.28 9.75 -39.26 -0.38 -5.66 16 19 C 0.51 10.71 5.54 -15.09 -0.08 10.63 16 20 O -0.54 -13.15 16.55 4.93 0.08 -13.07 16 21 C -0.20 -4.41 9.60 -26.73 -0.26 -4.67 16 22 C -0.20 -4.62 9.54 -26.72 -0.25 -4.87 16 23 H 0.27 6.42 8.32 -40.82 -0.34 6.08 16 24 H 0.14 3.04 5.95 -51.93 -0.31 2.74 16 25 H 0.09 2.19 7.41 -51.93 -0.38 1.80 16 26 H 0.20 2.85 7.92 -52.49 -0.42 2.43 16 27 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.11 1.27 7.58 -51.93 -0.39 0.87 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.08 1.82 8.14 -51.93 -0.42 1.39 16 34 H 0.06 1.21 5.80 -51.93 -0.30 0.91 16 35 H 0.06 1.50 5.70 -51.93 -0.30 1.20 16 36 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 LS Contribution 300.97 15.07 4.54 4.54 Total: -1.00 -28.42 300.97 -8.96 -37.38 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.61 Total: 7.00 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -4.23 Total: -9.97 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.28 Total: -40.84 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.42 -8.96 -37.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395592121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.925 kcal (2) G-P(sol) polarization free energy of solvation -28.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds