Wall clock time and date at job start Mon Mar 30 2020 04:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00060 * 2 1 4 4 H 1.48496 * 109.47039 * 90.00353 * 3 2 1 5 5 H 1.48501 * 109.47024 * 210.00317 * 3 2 1 6 6 H 1.48499 * 109.47205 * 330.00000 * 3 2 1 7 7 C 1.37879 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00067 * 189.31399 * 7 2 1 9 9 C 1.50692 * 119.99955 * 9.31546 * 7 2 1 10 10 C 1.52997 * 115.55313 * 39.62160 * 9 7 2 11 11 N 1.46499 * 109.47372 * 174.49314 * 10 9 7 12 12 C 1.34749 * 120.04503 * 88.75374 * 11 10 9 13 13 N 1.30636 * 121.49464 * 179.97438 * 12 11 10 14 14 C 1.33524 * 121.50427 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.04043 * 179.97438 * 14 13 12 16 16 C 1.52991 * 117.50124 * 8.62300 * 15 14 13 17 17 C 1.53002 * 60.00273 * 252.50896 * 16 15 14 18 18 C 1.36193 * 119.90916 * 0.02562 * 14 13 12 19 19 C 1.35021 * 120.04147 * 268.48251 * 11 10 9 20 20 O 1.21990 * 120.70817 * 359.97438 * 19 11 10 21 21 C 1.53001 * 117.50050 * 253.91018 * 9 7 2 22 22 C 1.53001 * 60.00426 * 252.51515 * 21 9 7 23 23 H 0.97004 * 120.00044 * 354.97980 * 1 2 3 24 24 H 1.08996 * 109.47022 * 294.48975 * 10 9 7 25 25 H 1.08994 * 109.47133 * 54.49328 * 10 9 7 26 26 H 1.08001 * 119.25103 * 359.97438 * 12 11 10 27 27 H 1.08998 * 115.54522 * 154.33173 * 15 14 13 28 28 H 1.09002 * 117.50531 * 359.97438 * 16 15 14 29 29 H 1.09004 * 117.49946 * 145.02639 * 16 15 14 30 30 H 1.08996 * 117.49814 * 252.51086 * 17 16 15 31 31 H 1.09002 * 117.51455 * 107.47705 * 17 16 15 32 32 H 1.07999 * 120.70309 * 180.02562 * 18 14 13 33 33 H 1.09005 * 117.49892 * 0.02562 * 21 9 7 34 34 H 1.08998 * 117.50101 * 145.02184 * 21 9 7 35 35 H 1.09005 * 117.49248 * 252.51140 * 22 21 9 36 36 H 1.08996 * 117.50252 * 107.48684 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0739 -1.2003 0.1508 9 6 1.2659 -2.4904 -0.2124 10 6 0.1512 -2.4513 -1.2596 11 7 -0.3856 -3.8007 -1.4521 12 6 -1.4005 -4.2394 -0.6817 13 7 -1.9011 -5.4370 -0.8294 14 6 -1.4298 -6.2816 -1.7499 15 6 -2.0317 -7.6560 -1.8913 16 6 -3.3046 -7.9549 -1.0968 17 6 -1.9741 -8.5811 -0.6740 18 6 -0.4039 -5.8997 -2.5601 19 6 0.1323 -4.6046 -2.4053 20 8 1.0476 -4.2204 -3.1144 21 6 1.0604 -3.3936 1.0054 22 6 2.0648 -3.7886 -0.0791 23 1 -0.4850 0.8369 0.0735 24 1 -0.6446 -1.7891 -0.9186 25 1 0.5520 -2.0817 -2.2033 26 1 -1.8093 -3.5860 0.0748 27 1 -1.9336 -8.1131 -2.8759 28 1 -3.7066 -7.1577 -0.4715 29 1 -4.0442 -8.6089 -1.5587 30 1 -1.8386 -9.6469 -0.8578 31 1 -1.5007 -8.1957 0.2291 32 1 -0.0131 -6.5724 -3.3092 33 1 1.4591 -3.0499 1.9599 34 1 0.1308 -3.9600 1.0608 35 1 1.7958 -4.6148 -0.7372 36 1 3.1245 -3.7049 0.1618 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395592121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:24 Heat of formation + Delta-G solvation = 45.815726 kcal Electronic energy + Delta-G solvation = -19541.110223 eV Core-core repulsion = 16606.046360 eV Total energy + Delta-G solvation = -2935.063863 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.94442 -39.40316 -38.56592 -37.56835 -34.98966 -34.23217 -32.05190 -29.01332 -27.58458 -25.66770 -25.28803 -23.15452 -23.01757 -21.89675 -21.21448 -19.16224 -18.67528 -18.09221 -17.57999 -17.19304 -16.51944 -16.33392 -15.55375 -15.37271 -15.11445 -14.69694 -14.26275 -14.11684 -13.98114 -13.56209 -12.99745 -12.86221 -12.79655 -12.59845 -12.29256 -12.22448 -12.16584 -11.56382 -11.50414 -11.20318 -11.18075 -10.89449 -10.78655 -10.57801 -10.11676 -9.44223 -8.22638 -6.29048 -0.32763 0.80703 1.40493 1.46005 1.54880 1.62531 2.38432 2.50078 2.90458 2.95929 3.16601 3.41597 3.46630 3.79961 3.94506 4.01228 4.07971 4.19370 4.33080 4.36628 4.41405 4.67741 4.71989 4.75173 4.77513 4.87205 4.96204 5.02842 5.09080 5.20963 5.31195 5.40183 5.42272 5.54649 5.69622 5.79460 6.24435 6.67063 6.79272 6.88410 7.33584 8.82587 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.037746 B = 0.005299 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.616871 B = 5282.267008 C = 5404.411624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.037 3.963 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.051 0.949 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.509 5.509 12 C 0.387 3.613 13 N -0.547 5.547 14 C 0.220 3.780 15 C -0.139 4.139 16 C -0.145 4.145 17 C -0.150 4.150 18 C -0.320 4.320 19 C 0.500 3.500 20 O -0.591 6.591 21 C -0.181 4.181 22 C -0.204 4.204 23 H 0.272 0.728 24 H 0.136 0.864 25 H 0.055 0.945 26 H 0.228 0.772 27 H 0.141 0.859 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.811 -12.193 0.315 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.165 4.165 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.069 0.931 9 C 0.021 3.979 10 C 0.018 3.982 11 N -0.221 5.221 12 C 0.104 3.896 13 N -0.270 5.270 14 C 0.098 3.902 15 C -0.158 4.158 16 C -0.182 4.182 17 C -0.187 4.187 18 C -0.345 4.345 19 C 0.303 3.697 20 O -0.474 6.474 21 C -0.218 4.218 22 C -0.241 4.241 23 H 0.082 0.918 24 H 0.153 0.847 25 H 0.074 0.926 26 H 0.244 0.756 27 H 0.159 0.841 28 H 0.117 0.883 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.175 0.825 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.980 -12.147 0.182 15.107 hybrid contribution 1.638 1.329 -0.612 2.197 sum -7.341 -10.818 -0.430 13.081 Atomic orbital electron populations 1.69686 1.06563 1.28355 1.49148 1.25552 0.95865 1.01719 0.93342 0.85556 0.78580 0.79158 0.78454 1.19685 1.20380 1.20141 1.20660 0.93614 0.90134 1.50780 0.93073 1.19292 0.95037 0.89805 0.93760 1.21753 0.99510 0.78187 0.98734 1.47142 1.28738 1.17545 1.28714 1.25536 0.81898 0.92254 0.89888 1.68249 1.31858 1.02497 1.24441 1.20679 0.88369 0.94439 0.86722 1.21145 1.04922 0.90222 0.99471 1.23037 0.90301 1.03058 1.01785 1.23028 1.01021 0.98763 0.95914 1.22554 1.05139 0.96738 1.10023 1.17742 0.84011 0.87266 0.80685 1.90891 1.31826 1.77171 1.47523 1.23032 0.98938 1.05294 0.94564 1.22802 0.96912 1.00418 1.03975 0.91813 0.84697 0.92632 0.75640 0.84115 0.88304 0.86116 0.85801 0.89819 0.82521 0.90081 0.89784 0.92099 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.05 10.92 21.45 0.23 -44.81 16 2 C 0.04 1.87 5.27 84.66 0.45 2.31 16 3 Si 0.96 41.08 29.55 68.60 2.03 43.11 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.51 -27.41 9.02 25.60 0.23 -27.18 16 8 H 0.05 2.80 7.83 -2.91 -0.02 2.77 16 9 C 0.02 1.07 2.31 -52.93 -0.12 0.95 16 10 C 0.14 6.35 4.89 86.38 0.42 6.77 16 11 N -0.51 -19.94 1.87 -655.05 -1.22 -21.16 16 12 C 0.39 12.23 9.29 180.32 1.67 13.90 16 13 N -0.55 -16.04 9.41 -187.75 -1.77 -17.80 16 14 C 0.22 6.34 6.43 41.83 0.27 6.60 16 15 C -0.14 -2.84 6.03 -11.54 -0.07 -2.91 16 16 C -0.14 -2.42 10.03 30.59 0.31 -2.11 16 17 C -0.15 -2.56 10.24 30.60 0.31 -2.25 16 18 C -0.32 -10.94 9.75 22.48 0.22 -10.72 16 19 C 0.50 21.25 5.54 84.89 0.47 21.72 16 20 O -0.59 -30.17 16.55 -5.28 -0.09 -30.26 16 21 C -0.18 -7.70 9.60 30.60 0.29 -7.41 16 22 C -0.20 -9.41 9.54 30.60 0.29 -9.12 16 23 H 0.27 12.86 8.32 -92.71 -0.77 12.08 16 24 H 0.14 6.11 5.95 -2.39 -0.01 6.10 16 25 H 0.06 2.87 7.41 -2.39 -0.02 2.85 16 26 H 0.23 5.89 7.92 -2.91 -0.02 5.86 16 27 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.10 1.93 7.58 -2.39 -0.02 1.91 16 29 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.16 4.82 8.06 -2.91 -0.02 4.80 16 33 H 0.08 3.49 8.14 -2.38 -0.02 3.47 16 34 H 0.08 3.15 5.80 -2.39 -0.01 3.14 16 35 H 0.06 2.86 5.70 -2.38 -0.01 2.84 16 36 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -62.22 300.97 5.02 -57.20 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 1.09 Total: 23.17 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 4.75 Total: -9.44 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -2.75 Total: -83.78 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.09 Total: -30.26 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -62.22 5.02 -57.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395592121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.018 kcal (2) G-P(sol) polarization free energy of solvation -62.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds