Wall clock time and date at job start Mon Mar 30 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47348 * 2 1 4 4 C 1.52999 * 109.47474 * 120.00040 * 2 1 3 5 5 N 1.46499 * 109.46849 * 64.99741 * 4 2 1 6 6 C 1.46499 * 120.00453 * 270.00120 * 5 4 2 7 7 C 1.50698 * 109.47223 * 270.00709 * 6 5 4 8 8 H 1.08004 * 120.00155 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00131 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99729 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00105 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47114 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47241 * 119.99601 * 11 9 7 14 14 H 1.48500 * 109.46756 * 239.99581 * 11 9 7 15 15 C 1.39085 * 120.00055 * 90.00371 * 5 4 2 16 16 C 1.39365 * 120.09069 * 5.00114 * 15 5 4 17 17 C 1.39889 * 117.73505 * 180.22954 * 16 15 5 18 18 C 1.43201 * 121.12285 * 179.72440 * 17 16 15 19 19 N 6.33284 * 148.09189 * 203.59003 * 2 1 3 20 20 C 1.40069 * 117.75338 * 359.51586 * 17 16 15 21 21 N 1.31688 * 119.81048 * 0.49165 * 20 17 16 22 22 N 1.28273 * 122.44920 * 359.74807 * 21 20 17 23 23 H 1.08994 * 109.47244 * 59.99908 * 1 2 3 24 24 H 1.08996 * 109.46802 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46838 * 300.00030 * 1 2 3 26 26 H 1.09004 * 109.47174 * 239.99971 * 2 1 3 27 27 H 1.09002 * 109.47594 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46890 * 300.00195 * 3 2 1 29 29 H 1.09004 * 109.47006 * 59.99869 * 3 2 1 30 30 H 1.08997 * 109.47038 * 305.00101 * 4 2 1 31 31 H 1.08999 * 109.47427 * 184.99838 * 4 2 1 32 32 H 1.09008 * 109.47095 * 30.00103 * 6 5 4 33 33 H 1.08995 * 109.47436 * 149.99952 * 6 5 4 34 34 H 0.97004 * 119.99481 * 180.02562 * 10 9 7 35 35 H 1.08002 * 121.12924 * 359.94896 * 16 15 5 36 36 H 1.08003 * 120.09124 * 180.24435 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.3746 -2.5660 1.7612 7 6 0.5717 -2.9408 3.2075 8 1 1.5510 -2.8644 3.6566 9 6 -0.4980 -3.3822 3.9572 10 7 -1.6903 -3.4757 3.4102 11 14 -0.2536 -3.8475 5.7497 12 1 1.1713 -3.6551 6.1212 13 1 -1.1092 -2.9870 6.6056 14 1 -0.6283 -5.2708 5.9471 15 6 2.4977 -3.0618 0.5930 16 6 3.7578 -2.6720 0.1429 17 6 4.5654 -3.6453 -0.4548 18 6 5.8705 -3.3232 -0.9482 19 7 6.9059 -3.0676 -1.3395 20 6 4.0561 -4.9466 -0.5504 21 7 2.8502 -5.2130 -0.0932 22 7 2.1074 -4.3196 0.4505 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6055 -0.2618 2.1369 31 1 3.1264 -0.6443 1.2951 32 1 -0.3484 -1.7532 1.6918 33 1 0.0043 -3.4297 1.2092 34 1 -2.4429 -3.7859 3.9378 35 1 4.0973 -1.6522 0.2479 36 1 4.6492 -5.7285 -1.0015 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396939037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:55 Heat of formation + Delta-G solvation = 88.552135 kcal Electronic energy + Delta-G solvation = -19115.751786 eV Core-core repulsion = 16214.833864 eV Total energy + Delta-G solvation = -2900.917922 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69916 -37.74141 -36.82247 -34.40280 -33.08692 -32.68117 -30.62500 -28.02521 -26.92127 -25.73657 -25.06149 -23.39419 -21.85463 -20.13259 -18.62402 -17.40045 -16.55466 -16.32986 -15.79474 -15.13889 -14.91679 -14.55151 -14.15971 -13.59594 -13.46827 -13.30913 -13.25092 -12.78792 -12.61689 -12.38262 -12.11575 -11.65299 -11.51671 -11.32174 -11.01393 -10.80505 -10.71180 -10.53930 -10.41449 -10.29366 -10.12518 -9.88992 -9.41216 -9.18996 -8.47525 -7.20617 -6.08953 -4.15262 0.54809 1.47800 2.42932 2.98059 3.26426 3.34356 3.35689 3.43290 3.65226 4.05892 4.39217 4.69941 4.71172 4.86394 5.04069 5.06649 5.11189 5.24612 5.30125 5.55111 5.65394 5.71795 5.78815 5.97875 6.02200 6.04539 6.09208 6.20616 6.24178 6.46565 6.60396 6.93153 7.24689 7.34619 7.69552 7.89567 7.98430 8.15081 8.87504 9.29910 9.49922 10.97287 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.007002 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.360981 B = 3997.867211 C = 5167.412091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.123 3.877 5 N -0.566 5.566 6 C 0.244 3.756 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.895 3.105 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.282 1.282 15 C 0.360 3.640 16 C -0.146 4.146 17 C 0.007 3.993 18 C 0.266 3.734 19 N -0.409 5.409 20 C -0.007 4.007 21 N -0.189 5.189 22 N -0.266 5.266 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.263 0.737 35 H 0.149 0.851 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 6.108 -6.912 11.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.202 4.202 4 C -0.002 4.002 5 N -0.272 5.272 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.137 4.137 10 N -0.530 5.530 11 Si 0.723 3.277 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.208 1.208 15 C 0.117 3.883 16 C -0.185 4.185 17 C -0.007 4.007 18 C -0.050 4.050 19 N -0.085 5.085 20 C -0.178 4.178 21 N -0.031 5.031 22 N -0.120 5.120 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.167 0.833 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.440 5.506 -7.100 11.665 hybrid contribution 0.863 0.689 1.009 1.496 sum 8.303 6.195 -6.091 12.017 Atomic orbital electron populations 1.21934 0.94345 1.03204 1.01140 1.21598 0.97349 0.95852 0.98667 1.21783 1.00535 0.95885 1.01978 1.21639 0.99293 0.80720 0.98501 1.47251 1.20455 1.03884 1.55656 1.19618 0.77545 0.96880 0.93379 1.21448 0.95143 1.44846 0.95393 0.92529 1.24879 0.95023 0.95262 0.98545 1.69927 0.99820 1.46669 1.36537 0.86490 0.78125 0.78344 0.84740 1.19922 1.21011 1.20795 1.19980 0.87916 0.90686 0.89719 1.21913 0.93869 1.00887 1.01782 1.16737 0.88072 0.95598 1.00318 1.25358 0.92485 0.93563 0.93625 1.81241 1.11081 1.07596 1.08550 1.23945 0.96083 0.94283 1.03471 1.72917 1.02178 1.25188 1.02805 1.73140 1.26203 0.98028 1.14670 0.93508 0.91129 0.92410 0.91502 0.92949 0.92671 0.92355 0.89131 0.91625 0.93863 0.92931 0.92688 0.83306 0.81508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.18 37.16 0.30 -1.78 16 2 C -0.11 -1.44 3.13 -90.62 -0.28 -1.72 16 3 C -0.14 -1.43 9.19 37.16 0.34 -1.09 16 4 C 0.12 1.77 4.76 -4.04 -0.02 1.75 16 5 N -0.57 -10.49 2.40 -175.09 -0.42 -10.91 16 6 C 0.24 5.67 4.30 -5.20 -0.02 5.65 16 7 C -0.53 -13.82 9.39 -34.44 -0.32 -14.14 16 8 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -24.97 13.29 55.43 0.74 -24.23 16 11 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 C 0.36 6.48 7.45 -154.80 -1.15 5.33 16 16 C -0.15 -2.07 9.11 -38.54 -0.35 -2.42 16 17 C 0.01 0.09 5.76 -106.67 -0.61 -0.52 16 18 C 0.27 3.38 15.42 -22.47 -0.35 3.03 16 19 N -0.41 -5.74 18.54 41.84 0.78 -4.97 16 20 C -0.01 -0.09 11.08 -16.93 -0.19 -0.28 16 21 N -0.19 -3.39 11.47 30.81 0.35 -3.04 16 22 N -0.27 -5.43 10.24 31.21 0.32 -5.11 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.18 5.89 -51.93 -0.31 0.87 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.38 8.07 -51.93 -0.42 0.97 16 31 H 0.07 0.80 6.03 -51.93 -0.31 0.49 16 32 H 0.04 1.02 5.98 -51.92 -0.31 0.71 16 33 H 0.05 1.37 7.32 -51.93 -0.38 0.99 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.15 1.72 6.14 -52.49 -0.32 1.39 16 36 H 0.17 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -28.92 312.48 -5.85 -34.78 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.55 Total: -2.64 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -2.75 Total: -4.53 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 1.77 Total: -48.27 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.92 -5.85 -34.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396939037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.331 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds