Wall clock time and date at job start Mon Mar 30 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38607 * 119.55091 * 2 1 4 4 C 1.38585 * 119.34926 * 179.97438 * 3 2 1 5 5 C 1.38634 * 118.48720 * 359.72472 * 4 3 2 6 6 C 1.39261 * 119.06184 * 0.53081 * 5 4 3 7 7 C 1.48167 * 119.72381 * 179.73161 * 6 5 4 8 8 O 1.21517 * 119.99946 * 359.73005 * 7 6 5 9 9 N 1.34780 * 120.00465 * 179.72982 * 7 6 5 10 10 C 1.47743 * 125.81887 * 359.90767 * 9 7 6 11 11 C 1.54909 * 104.83995 * 155.82587 * 10 9 7 12 12 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 13 13 H 1.08999 * 110.72303 * 82.85766 * 12 11 10 14 14 C 1.50701 * 110.87006 * 206.06403 * 12 11 10 15 15 H 1.08000 * 120.00221 * 355.05145 * 14 12 11 16 16 C 1.37884 * 119.99840 * 175.06535 * 14 12 11 17 17 N 1.31517 * 119.99888 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99730 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47388 * 59.99919 * 18 16 14 20 20 H 1.48503 * 109.46960 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47377 * 299.99352 * 18 16 14 22 22 C 1.47020 * 125.64983 * 180.02562 * 9 7 6 23 23 N 1.31498 * 119.54954 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.47156 * 270.02605 * 1 2 3 25 25 H 1.09002 * 109.46850 * 30.02652 * 1 2 3 26 26 H 1.08990 * 109.47081 * 150.02465 * 1 2 3 27 27 H 1.07997 * 120.32145 * 359.95141 * 3 2 1 28 28 H 1.08002 * 120.74968 * 180.02562 * 4 3 2 29 29 H 1.07998 * 120.46762 * 180.28705 * 5 4 3 30 30 H 1.09003 * 110.29227 * 37.02448 * 10 9 7 31 31 H 1.08996 * 110.53057 * 274.75660 * 10 9 7 32 32 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 33 33 H 1.09006 * 111.00238 * 155.16698 * 11 10 9 34 34 H 0.96996 * 119.99953 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.88367 * 61.60808 * 22 9 7 36 36 H 1.09000 * 109.88319 * 300.59426 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2058 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0199 0.0069 6 6 3.4820 -1.1924 0.0013 7 6 4.1691 -2.5052 0.0019 8 8 5.3832 -2.5555 0.0024 9 7 3.4475 -3.6436 0.0020 10 6 1.9727 -3.7324 0.0033 11 6 1.6583 -5.1196 -0.6104 12 6 2.8052 -5.9859 -0.0260 13 1 2.5590 -6.3233 0.9808 14 6 3.1010 -7.1605 -0.9225 15 1 2.4857 -7.3459 -1.7905 16 6 4.1572 -7.9988 -0.6345 17 7 4.9067 -7.7729 0.4224 18 14 4.5235 -9.4552 -1.7454 19 1 4.8148 -8.9697 -3.1182 20 1 5.7008 -10.1934 -1.2217 21 1 3.3465 -10.3600 -1.7796 22 6 3.9977 -5.0069 0.0031 23 7 2.1555 -1.1439 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8901 -0.5134 27 1 1.6485 2.1398 -0.0008 28 1 4.1319 2.1271 0.0010 29 1 5.3126 -0.0610 0.0122 30 1 1.5457 -2.9401 -0.6115 31 1 1.5870 -3.6715 1.0209 32 1 1.7095 -5.0861 -1.6986 33 1 0.6859 -5.4827 -0.2775 34 1 5.6500 -8.3624 0.6248 35 1 4.5878 -5.1678 0.9054 36 1 4.6210 -5.1559 -0.8786 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397599613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:50 Heat of formation + Delta-G solvation = 2.542738 kcal Electronic energy + Delta-G solvation = -19156.028054 eV Core-core repulsion = 16219.087733 eV Total energy + Delta-G solvation = -2936.940321 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55090 -38.70573 -36.63283 -33.18769 -33.00680 -32.36751 -30.36564 -27.98956 -27.73796 -25.53736 -24.01503 -22.29915 -22.00280 -19.75145 -19.13274 -17.02467 -16.55246 -16.32922 -15.84497 -15.30499 -14.99694 -14.50560 -14.37896 -13.99582 -13.47588 -13.17758 -12.51280 -12.42466 -12.40573 -12.29679 -12.20305 -11.74260 -11.58302 -11.26565 -10.89886 -10.57759 -10.53134 -10.01991 -9.96860 -9.72108 -9.30968 -9.02034 -9.00921 -8.93103 -8.47487 -7.73653 -6.06399 -4.10816 0.72188 1.16197 3.07366 3.32110 3.37786 3.39484 3.57368 4.00214 4.14286 4.42329 4.56879 4.81246 4.90465 5.03756 5.26395 5.30945 5.43514 5.46469 5.50937 5.73458 5.87247 5.95358 6.02105 6.03771 6.17987 6.40386 6.58678 6.68211 6.83679 6.95865 7.05274 7.13880 7.52295 7.73052 7.80499 7.92411 8.28403 8.34800 8.72839 8.92371 9.54634 11.03563 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.035694 B = 0.004925 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.247385 B = 5684.204330 C = 6249.292794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.120 3.880 3 C -0.161 4.161 4 C -0.080 4.080 5 C -0.124 4.124 6 C 0.101 3.899 7 C 0.565 3.435 8 O -0.548 6.548 9 N -0.589 5.589 10 C 0.104 3.896 11 C -0.133 4.133 12 C 0.045 3.955 13 H 0.039 0.961 14 C -0.518 4.518 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.125 3.875 23 N -0.451 5.451 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.147 0.853 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.264 0.736 35 H 0.063 0.937 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.128 17.328 -0.168 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.020 4.020 3 C -0.181 4.181 4 C -0.106 4.106 5 C -0.145 4.145 6 C -0.038 4.038 7 C 0.351 3.649 8 O -0.427 6.427 9 N -0.319 5.319 10 C -0.019 4.019 11 C -0.172 4.172 12 C 0.026 3.974 13 H 0.057 0.943 14 C -0.556 4.556 15 H 0.079 0.921 16 C -0.139 4.139 17 N -0.525 5.525 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.004 3.996 23 N -0.164 5.164 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.153 0.847 28 H 0.157 0.843 29 H 0.165 0.835 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.721 16.448 -0.058 18.171 hybrid contribution 0.847 0.042 -0.478 0.973 sum -6.874 16.491 -0.536 17.874 Atomic orbital electron populations 1.20724 0.88461 1.03622 1.03234 1.21447 0.97265 0.88210 0.95078 1.22118 0.95007 0.99266 1.01673 1.21577 0.94415 0.98148 0.96418 1.22117 1.02356 0.91775 0.98254 1.21407 0.89478 0.94627 0.98260 1.17513 0.86094 0.82422 0.78859 1.90755 1.12816 1.86576 1.52521 1.48860 1.08475 1.06737 1.67839 1.22660 0.79721 0.98849 1.00676 1.22935 0.99804 0.94170 1.00254 1.19727 0.88760 0.91800 0.97114 0.94325 1.20995 1.14090 1.09777 1.10769 0.92130 1.25043 0.95988 0.97740 0.95160 1.69938 1.18243 1.38321 1.25959 0.86606 0.77758 0.82440 0.80917 1.20199 1.21256 1.20178 1.22505 0.98745 0.76695 1.01653 1.67799 1.08749 1.28848 1.11019 0.90285 0.90778 0.90103 0.84659 0.84315 0.83534 0.89137 0.92537 0.91791 0.91658 0.92640 0.91883 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.17 36.00 0.37 -0.49 16 2 C 0.12 1.41 6.78 -82.60 -0.56 0.85 16 3 C -0.16 -1.57 9.75 -39.32 -0.38 -1.95 16 4 C -0.08 -0.83 10.17 -39.31 -0.40 -1.23 16 5 C -0.12 -1.75 9.63 -39.06 -0.38 -2.13 16 6 C 0.10 1.73 6.72 -83.02 -0.56 1.17 16 7 C 0.57 12.12 7.84 -12.18 -0.10 12.02 16 8 O -0.55 -13.25 16.65 5.35 0.09 -13.16 16 9 N -0.59 -12.96 3.34 -171.25 -0.57 -13.53 16 10 C 0.10 1.95 5.96 -2.35 -0.01 1.93 16 11 C -0.13 -2.69 6.51 -24.58 -0.16 -2.85 16 12 C 0.05 1.12 2.87 -89.93 -0.26 0.86 16 13 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.52 -14.05 8.42 -34.44 -0.29 -14.34 16 15 H 0.06 1.60 7.78 -52.49 -0.41 1.19 16 16 C 0.06 1.76 5.33 -17.82 -0.10 1.66 16 17 N -0.89 -25.65 12.41 55.43 0.69 -24.96 16 18 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.12 3.16 5.47 -3.06 -0.02 3.14 16 23 N -0.45 -6.94 6.52 -6.06 -0.04 -6.98 16 24 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.15 2.03 7.64 -52.49 -0.40 1.63 16 30 H 0.09 1.56 5.90 -51.93 -0.31 1.26 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 1.74 8.00 -51.93 -0.42 1.32 16 36 H 0.06 1.73 7.81 -51.93 -0.41 1.33 16 LS Contribution 303.78 15.07 4.58 4.58 Total: -1.00 -31.73 303.78 -7.99 -39.71 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.87 Total: -0.59 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.84 Total: -1.34 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.08 Total: -45.47 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.73 -7.99 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397599613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.255 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds