Wall clock time and date at job start Mon Mar 30 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38607 * 119.55091 * 2 1 4 4 C 1.38585 * 119.34926 * 179.97438 * 3 2 1 5 5 C 1.38634 * 118.48720 * 359.72472 * 4 3 2 6 6 C 1.39261 * 119.06184 * 0.53081 * 5 4 3 7 7 C 1.48167 * 119.72381 * 179.73161 * 6 5 4 8 8 O 1.21517 * 119.99946 * 359.73005 * 7 6 5 9 9 N 1.34780 * 120.00465 * 179.72982 * 7 6 5 10 10 C 1.47743 * 125.81887 * 359.90767 * 9 7 6 11 11 C 1.54909 * 104.83995 * 155.82587 * 10 9 7 12 12 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 13 13 H 1.08999 * 110.72303 * 82.85766 * 12 11 10 14 14 C 1.50701 * 110.87006 * 206.06403 * 12 11 10 15 15 H 1.08000 * 120.00221 * 355.05145 * 14 12 11 16 16 C 1.37884 * 119.99840 * 175.06535 * 14 12 11 17 17 N 1.31517 * 119.99888 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99730 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47388 * 59.99919 * 18 16 14 20 20 H 1.48503 * 109.46960 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47377 * 299.99352 * 18 16 14 22 22 C 1.47020 * 125.64983 * 180.02562 * 9 7 6 23 23 N 1.31498 * 119.54954 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.47156 * 270.02605 * 1 2 3 25 25 H 1.09002 * 109.46850 * 30.02652 * 1 2 3 26 26 H 1.08990 * 109.47081 * 150.02465 * 1 2 3 27 27 H 1.07997 * 120.32145 * 359.95141 * 3 2 1 28 28 H 1.08002 * 120.74968 * 180.02562 * 4 3 2 29 29 H 1.07998 * 120.46762 * 180.28705 * 5 4 3 30 30 H 1.09003 * 110.29227 * 37.02448 * 10 9 7 31 31 H 1.08996 * 110.53057 * 274.75660 * 10 9 7 32 32 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 33 33 H 1.09006 * 111.00238 * 155.16698 * 11 10 9 34 34 H 0.96996 * 119.99953 * 180.02562 * 17 16 14 35 35 H 1.09002 * 109.88367 * 61.60808 * 22 9 7 36 36 H 1.09000 * 109.88319 * 300.59426 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2058 0.0000 4 6 3.5764 1.2009 0.0005 5 6 4.2334 -0.0199 0.0069 6 6 3.4820 -1.1924 0.0013 7 6 4.1691 -2.5052 0.0019 8 8 5.3832 -2.5555 0.0024 9 7 3.4475 -3.6436 0.0020 10 6 1.9727 -3.7324 0.0033 11 6 1.6583 -5.1196 -0.6104 12 6 2.8052 -5.9859 -0.0260 13 1 2.5590 -6.3233 0.9808 14 6 3.1010 -7.1605 -0.9225 15 1 2.4857 -7.3459 -1.7905 16 6 4.1572 -7.9988 -0.6345 17 7 4.9067 -7.7729 0.4224 18 14 4.5235 -9.4552 -1.7454 19 1 4.8148 -8.9697 -3.1182 20 1 5.7008 -10.1934 -1.2217 21 1 3.3465 -10.3600 -1.7796 22 6 3.9977 -5.0069 0.0031 23 7 2.1555 -1.1439 0.0005 24 1 -0.3634 0.0005 1.0277 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8901 -0.5134 27 1 1.6485 2.1398 -0.0008 28 1 4.1319 2.1271 0.0010 29 1 5.3126 -0.0610 0.0122 30 1 1.5457 -2.9401 -0.6115 31 1 1.5870 -3.6715 1.0209 32 1 1.7095 -5.0861 -1.6986 33 1 0.6859 -5.4827 -0.2775 34 1 5.6500 -8.3624 0.6248 35 1 4.5878 -5.1678 0.9054 36 1 4.6210 -5.1559 -0.8786 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397599613.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:50 Heat of formation + Delta-G solvation = -17.611719 kcal Electronic energy + Delta-G solvation = -19156.902016 eV Core-core repulsion = 16219.087733 eV Total energy + Delta-G solvation = -2937.814283 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.74383 -40.22684 -38.42409 -35.04255 -33.95390 -33.61101 -32.12847 -29.76811 -28.66719 -27.29857 -25.53326 -23.72132 -23.08096 -21.53666 -20.73338 -18.61050 -18.36492 -17.58342 -17.04845 -16.76142 -16.59616 -16.33922 -15.67839 -15.08794 -14.84428 -14.34037 -14.25777 -14.07144 -13.74876 -13.43362 -13.30310 -13.11203 -12.98787 -12.83189 -12.74632 -12.49549 -12.37961 -11.68577 -11.46360 -11.15783 -11.03819 -10.89780 -10.60562 -10.23924 -10.02941 -9.53339 -8.19252 -6.31102 -0.35719 0.26036 1.41313 1.43763 1.51371 1.69255 2.00182 2.41413 2.82531 3.02036 3.13581 3.63514 3.87134 4.02964 4.04195 4.10632 4.32253 4.37727 4.47270 4.61648 4.64277 4.81720 4.86877 4.90327 4.96517 5.13469 5.14189 5.15978 5.23930 5.26017 5.35869 5.52270 5.64735 5.72209 5.82680 6.24625 6.57515 6.74097 6.81614 7.09183 7.38542 8.90362 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.035694 B = 0.004925 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.247385 B = 5684.204330 C = 6249.292794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.110 3.890 3 C -0.136 4.136 4 C -0.070 4.070 5 C -0.132 4.132 6 C 0.065 3.935 7 C 0.557 3.443 8 O -0.592 6.592 9 N -0.600 5.600 10 C 0.115 3.885 11 C -0.121 4.121 12 C 0.038 3.962 13 H 0.017 0.983 14 C -0.533 4.533 15 H 0.067 0.933 16 C 0.010 3.990 17 N -0.923 5.923 18 Si 0.961 3.039 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.262 1.262 22 C 0.145 3.855 23 N -0.474 5.474 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.184 0.816 28 H 0.180 0.820 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.262 0.738 35 H 0.025 0.975 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.759 20.123 -1.006 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.031 4.031 3 C -0.155 4.155 4 C -0.095 4.095 5 C -0.153 4.153 6 C -0.071 4.071 7 C 0.346 3.654 8 O -0.474 6.474 9 N -0.330 5.330 10 C -0.006 4.006 11 C -0.159 4.159 12 C 0.019 3.981 13 H 0.035 0.965 14 C -0.571 4.571 15 H 0.085 0.915 16 C -0.189 4.189 17 N -0.561 5.561 18 Si 0.786 3.214 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.187 1.187 22 C 0.022 3.978 23 N -0.187 5.187 24 H 0.109 0.891 25 H 0.125 0.875 26 H 0.091 0.909 27 H 0.202 0.798 28 H 0.198 0.802 29 H 0.155 0.845 30 H 0.131 0.869 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.388 19.255 -0.901 21.897 hybrid contribution 1.606 -0.650 -0.187 1.743 sum -8.782 18.605 -1.088 20.602 Atomic orbital electron populations 1.20855 0.85773 1.04869 1.04323 1.22170 0.98970 0.87925 0.94027 1.22685 0.94748 1.00363 0.97729 1.22032 0.95148 0.97846 0.94502 1.22197 1.02075 0.92498 0.98564 1.20729 0.90703 0.92608 1.03086 1.18381 0.85920 0.83916 0.77155 1.90699 1.14868 1.87589 1.54209 1.48929 1.09854 1.05630 1.68543 1.22747 0.77697 0.98616 1.01589 1.22878 0.99219 0.93786 1.00032 1.19674 0.90444 0.91960 0.96071 0.96481 1.21398 1.14147 1.10435 1.11094 0.91506 1.25911 0.95870 1.00666 0.96497 1.70094 1.18771 1.39423 1.27818 0.85554 0.77851 0.79110 0.78845 1.19780 1.21269 1.18655 1.21947 0.98345 0.79556 0.97955 1.67583 1.07763 1.31302 1.12086 0.89132 0.87544 0.90913 0.79829 0.80225 0.84498 0.86896 0.91579 0.91863 0.88831 0.92874 0.95628 0.95649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.17 71.24 0.72 -0.50 16 2 C 0.11 2.18 6.78 42.70 0.29 2.47 16 3 C -0.14 -1.92 9.75 22.44 0.22 -1.71 16 4 C -0.07 -1.18 10.17 22.45 0.23 -0.95 16 5 C -0.13 -3.62 9.63 22.61 0.22 -3.40 16 6 C 0.06 2.24 6.72 41.89 0.28 2.52 16 7 C 0.56 25.25 7.84 86.88 0.68 25.93 16 8 O -0.59 -30.81 16.65 -3.77 -0.06 -30.87 16 9 N -0.60 -27.73 3.34 -814.01 -2.72 -30.44 16 10 C 0.11 4.31 5.96 86.79 0.52 4.82 16 11 C -0.12 -4.86 6.51 31.99 0.21 -4.65 16 12 C 0.04 1.95 2.87 -10.35 -0.03 1.92 16 13 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 14 C -0.53 -29.65 8.42 25.60 0.22 -29.43 16 15 H 0.07 3.55 7.78 -2.91 -0.02 3.53 16 16 C 0.01 0.57 5.33 84.66 0.45 1.02 16 17 N -0.92 -55.90 12.41 21.45 0.27 -55.64 16 18 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 C 0.14 7.86 5.47 86.73 0.47 8.34 16 23 N -0.47 -13.86 6.52 -173.09 -1.13 -14.99 16 24 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.11 0.62 8.08 -2.39 -0.02 0.60 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 28 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 29 H 0.14 3.90 7.64 -2.91 -0.02 3.87 16 30 H 0.11 3.77 5.90 -2.39 -0.01 3.76 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 32 H 0.06 2.54 8.04 -2.39 -0.02 2.52 16 33 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.03 1.53 8.00 -2.39 -0.02 1.51 16 36 H 0.02 1.52 7.81 -2.39 -0.02 1.50 16 Total: -1.00 -75.33 303.78 3.93 -71.40 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.07 Total: 7.63 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 4.48 Total: 6.39 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -3.58 Total: -101.07 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.06 Total: -30.87 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -75.33 3.93 -71.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397599613.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.787 kcal (2) G-P(sol) polarization free energy of solvation -75.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds