Wall clock time and date at job start Mon Mar 30 2020 04:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38636 * 120.47217 * 2 1 4 4 C 1.38577 * 118.48951 * 179.70095 * 3 2 1 5 5 C 1.38602 * 119.35399 * 0.27395 * 4 3 2 6 6 N 1.31494 * 120.89891 * 359.97438 * 5 4 3 7 7 C 1.32739 * 121.64456 * 0.02577 * 6 5 4 8 8 C 1.48170 * 119.72104 * 180.02562 * 7 6 5 9 9 O 1.21517 * 119.99547 * 185.31886 * 8 7 6 10 10 N 1.34769 * 119.99954 * 5.31771 * 8 7 6 11 11 C 1.47422 * 125.65218 * 0.03154 * 10 8 7 12 12 C 1.54911 * 104.83442 * 204.09105 * 11 10 8 13 13 C 1.55164 * 101.57966 * 322.98562 * 12 11 10 14 14 H 1.09004 * 110.71642 * 277.13981 * 13 12 11 15 15 C 1.50691 * 110.71910 * 154.04433 * 13 12 11 16 16 H 1.08000 * 120.00425 * 359.97438 * 15 13 12 17 17 C 1.37881 * 119.99992 * 180.02562 * 15 13 12 18 18 N 1.31514 * 119.99812 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00282 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47048 * 59.99651 * 19 17 15 21 21 H 1.48502 * 109.46952 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46878 * 300.00205 * 19 17 15 23 23 C 1.47030 * 125.64571 * 179.71350 * 10 8 7 24 24 H 1.09004 * 109.46959 * 96.81450 * 1 2 3 25 25 H 1.08997 * 109.47134 * 216.80997 * 1 2 3 26 26 H 1.09002 * 109.47337 * 336.81330 * 1 2 3 27 27 H 1.08004 * 120.74806 * 359.97159 * 3 2 1 28 28 H 1.08005 * 120.32374 * 180.29576 * 4 3 2 29 29 H 1.08001 * 119.54894 * 180.02562 * 5 4 3 30 30 H 1.09007 * 110.36417 * 322.92495 * 11 10 8 31 31 H 1.08997 * 110.37365 * 85.13572 * 11 10 8 32 32 H 1.09000 * 111.00532 * 81.05680 * 12 11 10 33 33 H 1.09002 * 111.00411 * 204.91472 * 12 11 10 34 34 H 0.96999 * 120.00006 * 180.02562 * 18 17 15 35 35 H 1.08998 * 109.88454 * 298.39585 * 23 10 8 36 36 H 1.09002 * 109.87679 * 59.56793 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5949 1.1469 0.0064 5 6 4.2322 -0.0839 0.0067 6 7 3.5406 -1.2023 0.0016 7 6 2.2133 -1.2003 -0.0046 8 6 1.4768 -2.4860 -0.0096 9 8 0.2660 -2.4922 -0.1128 10 7 2.1497 -3.6485 0.1003 11 6 3.6116 -3.7860 0.2320 12 6 3.9248 -5.2099 -0.2914 13 6 2.7001 -6.0089 0.2275 14 1 2.8463 -6.3076 1.2656 15 6 2.4427 -7.2135 -0.6406 16 1 3.0790 -7.4128 -1.4902 17 6 1.3942 -8.0606 -0.3509 18 7 0.6190 -7.8177 0.6833 19 14 1.0754 -9.5543 -1.4266 20 1 2.2673 -10.4398 -1.4097 21 1 -0.1010 -10.2966 -0.9067 22 1 0.8062 -9.1132 -2.8188 23 6 1.5469 -4.9895 0.1152 24 1 -0.3633 -0.1219 -1.0204 25 1 -0.3633 -0.8228 0.6157 26 1 -0.3634 0.9447 0.4046 27 1 1.6900 2.1415 -0.0005 28 1 4.1721 2.0598 0.0113 29 1 5.3114 -0.1249 0.0121 30 1 4.1193 -3.0378 -0.3768 31 1 3.9092 -3.6898 1.2762 32 1 3.9682 -5.2251 -1.3805 33 1 4.8507 -5.5900 0.1403 34 1 -0.1185 -8.4138 0.8874 35 1 0.8792 -5.0863 0.9713 36 1 0.9946 -5.1578 -0.8094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397717824.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:46 Heat of formation + Delta-G solvation = 7.118953 kcal Electronic energy + Delta-G solvation = -19283.252192 eV Core-core repulsion = 16346.510311 eV Total energy + Delta-G solvation = -2936.741881 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62448 -38.64628 -36.72461 -33.69406 -32.83782 -32.00256 -30.41886 -27.94535 -27.40767 -25.29905 -24.10136 -22.29372 -22.05437 -19.83412 -19.21631 -17.07230 -16.62701 -16.37375 -15.58792 -15.33597 -15.11666 -14.44513 -14.38390 -13.81642 -13.27215 -13.11237 -12.67608 -12.57321 -12.35629 -12.30741 -11.93757 -11.75587 -11.54293 -11.25398 -10.90431 -10.57545 -10.50620 -9.95149 -9.83923 -9.67354 -9.19535 -9.03369 -8.98606 -8.85765 -8.47181 -7.72270 -6.06758 -4.11032 0.73103 1.16559 3.09373 3.31985 3.37492 3.39422 3.59013 3.98634 4.30071 4.42484 4.67944 4.80000 4.86995 4.93733 5.25977 5.29827 5.52971 5.64886 5.73962 5.85509 5.94802 6.01812 6.08154 6.19647 6.33752 6.48403 6.60736 6.73218 6.84944 6.96827 7.03345 7.12692 7.49412 7.72730 7.78771 7.92199 8.28787 8.35152 8.72656 8.92801 9.54516 11.03330 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036191 B = 0.005021 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.476919 B = 5574.780018 C = 6127.463092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.089 4.089 4 C -0.155 4.155 5 C 0.084 3.916 6 N -0.447 5.447 7 C 0.087 3.913 8 C 0.565 3.435 9 O -0.542 6.542 10 N -0.589 5.589 11 C 0.098 3.902 12 C -0.132 4.132 13 C 0.045 3.955 14 H 0.041 0.959 15 C -0.517 4.517 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.887 5.887 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.122 3.878 24 H 0.077 0.923 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.160 0.840 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.264 0.736 35 H 0.061 0.939 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.969 17.136 -0.303 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.115 4.115 4 C -0.175 4.175 5 C -0.076 4.076 6 N -0.158 5.158 7 C -0.051 4.051 8 C 0.352 3.648 9 O -0.422 6.422 10 N -0.319 5.319 11 C -0.025 4.025 12 C -0.170 4.170 13 C 0.026 3.974 14 H 0.059 0.941 15 C -0.555 4.555 16 H 0.078 0.922 17 C -0.139 4.139 18 N -0.525 5.525 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.002 3.998 24 H 0.096 0.904 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.177 0.823 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.537 16.255 -0.252 17.174 hybrid contribution -0.537 0.090 -0.495 0.736 sum 5.000 16.345 -0.747 17.109 Atomic orbital electron populations 1.21046 0.89051 1.03084 1.04095 1.20961 0.98481 0.92343 0.96282 1.21514 0.94165 0.97939 0.97868 1.22299 0.95237 0.99696 1.00278 1.22869 1.00544 0.87579 0.96594 1.67911 1.07275 1.30662 1.09929 1.21282 0.89741 0.94052 1.00008 1.17505 0.86218 0.82239 0.78865 1.90699 1.12986 1.86258 1.52247 1.48777 1.09129 1.06534 1.67421 1.22689 0.80325 0.98819 1.00672 1.22925 0.99833 0.93754 1.00533 1.19731 0.88350 0.91799 0.97552 0.94069 1.20994 1.13893 1.07930 1.12701 0.92160 1.25045 0.95902 0.97845 0.95095 1.69939 1.17687 1.37997 1.26839 0.86616 0.77695 0.82681 0.80795 1.20171 1.21257 1.20188 1.22555 0.98230 0.77642 1.01406 0.90441 0.88026 0.92560 0.84462 0.84623 0.82300 0.88586 0.92774 0.91824 0.91664 0.92669 0.92069 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 8.73 36.00 0.31 -1.26 16 2 C -0.08 -1.10 5.93 -104.09 -0.62 -1.72 16 3 C -0.09 -0.94 9.83 -39.31 -0.39 -1.33 16 4 C -0.16 -1.46 10.11 -39.32 -0.40 -1.85 16 5 C 0.08 0.93 11.18 -17.56 -0.20 0.74 16 6 N -0.45 -6.79 6.58 -9.80 -0.06 -6.86 16 7 C 0.09 1.48 6.71 -83.01 -0.56 0.93 16 8 C 0.57 11.78 7.78 -12.18 -0.09 11.68 16 9 O -0.54 -12.33 13.64 5.35 0.07 -12.26 16 10 N -0.59 -12.75 3.33 -171.50 -0.57 -13.32 16 11 C 0.10 1.84 6.04 -2.53 -0.02 1.82 16 12 C -0.13 -2.68 6.50 -24.58 -0.16 -2.84 16 13 C 0.04 1.11 2.77 -89.93 -0.25 0.86 16 14 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.52 -14.00 8.38 -34.44 -0.29 -14.28 16 16 H 0.06 1.60 7.76 -52.49 -0.41 1.19 16 17 C 0.06 1.77 5.36 -17.82 -0.10 1.67 16 18 N -0.89 -25.55 12.77 55.43 0.71 -24.84 16 19 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.12 3.06 5.78 -3.05 -0.02 3.04 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.10 1.66 5.87 -51.93 -0.30 1.36 16 26 H 0.06 0.58 8.05 -51.93 -0.42 0.16 16 27 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 28 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 29 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.10 1.66 5.73 -51.93 -0.30 1.36 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.06 1.68 7.82 -51.93 -0.41 1.27 16 LS Contribution 298.73 15.07 4.50 4.50 Total: -1.00 -30.90 298.73 -7.90 -38.80 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.77 Total: 0.31 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -2.76 Total: -2.54 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.07 Total: -45.02 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.90 -7.90 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397717824.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.923 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds