Wall clock time and date at job start Mon Mar 30 2020 04:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38636 * 120.47217 * 2 1 4 4 C 1.38577 * 118.48951 * 179.70095 * 3 2 1 5 5 C 1.38602 * 119.35399 * 0.27395 * 4 3 2 6 6 N 1.31494 * 120.89891 * 359.97438 * 5 4 3 7 7 C 1.32739 * 121.64456 * 0.02577 * 6 5 4 8 8 C 1.48170 * 119.72104 * 180.02562 * 7 6 5 9 9 O 1.21517 * 119.99547 * 185.31886 * 8 7 6 10 10 N 1.34769 * 119.99954 * 5.31771 * 8 7 6 11 11 C 1.47422 * 125.65218 * 0.03154 * 10 8 7 12 12 C 1.54911 * 104.83442 * 204.09105 * 11 10 8 13 13 C 1.55164 * 101.57966 * 322.98562 * 12 11 10 14 14 H 1.09004 * 110.71642 * 277.13981 * 13 12 11 15 15 C 1.50691 * 110.71910 * 154.04433 * 13 12 11 16 16 H 1.08000 * 120.00425 * 359.97438 * 15 13 12 17 17 C 1.37881 * 119.99992 * 180.02562 * 15 13 12 18 18 N 1.31514 * 119.99812 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 120.00282 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47048 * 59.99651 * 19 17 15 21 21 H 1.48502 * 109.46952 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46878 * 300.00205 * 19 17 15 23 23 C 1.47030 * 125.64571 * 179.71350 * 10 8 7 24 24 H 1.09004 * 109.46959 * 96.81450 * 1 2 3 25 25 H 1.08997 * 109.47134 * 216.80997 * 1 2 3 26 26 H 1.09002 * 109.47337 * 336.81330 * 1 2 3 27 27 H 1.08004 * 120.74806 * 359.97159 * 3 2 1 28 28 H 1.08005 * 120.32374 * 180.29576 * 4 3 2 29 29 H 1.08001 * 119.54894 * 180.02562 * 5 4 3 30 30 H 1.09007 * 110.36417 * 322.92495 * 11 10 8 31 31 H 1.08997 * 110.37365 * 85.13572 * 11 10 8 32 32 H 1.09000 * 111.00532 * 81.05680 * 12 11 10 33 33 H 1.09002 * 111.00411 * 204.91472 * 12 11 10 34 34 H 0.96999 * 120.00006 * 180.02562 * 18 17 15 35 35 H 1.08998 * 109.88454 * 298.39585 * 23 10 8 36 36 H 1.09002 * 109.87679 * 59.56793 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2100 1.1949 0.0000 4 6 3.5949 1.1469 0.0064 5 6 4.2322 -0.0839 0.0067 6 7 3.5406 -1.2023 0.0016 7 6 2.2133 -1.2003 -0.0046 8 6 1.4768 -2.4860 -0.0096 9 8 0.2660 -2.4922 -0.1128 10 7 2.1497 -3.6485 0.1003 11 6 3.6116 -3.7860 0.2320 12 6 3.9248 -5.2099 -0.2914 13 6 2.7001 -6.0089 0.2275 14 1 2.8463 -6.3076 1.2656 15 6 2.4427 -7.2135 -0.6406 16 1 3.0790 -7.4128 -1.4902 17 6 1.3942 -8.0606 -0.3509 18 7 0.6190 -7.8177 0.6833 19 14 1.0754 -9.5543 -1.4266 20 1 2.2673 -10.4398 -1.4097 21 1 -0.1010 -10.2966 -0.9067 22 1 0.8062 -9.1132 -2.8188 23 6 1.5469 -4.9895 0.1152 24 1 -0.3633 -0.1219 -1.0204 25 1 -0.3633 -0.8228 0.6157 26 1 -0.3634 0.9447 0.4046 27 1 1.6900 2.1415 -0.0005 28 1 4.1721 2.0598 0.0113 29 1 5.3114 -0.1249 0.0121 30 1 4.1193 -3.0378 -0.3768 31 1 3.9092 -3.6898 1.2762 32 1 3.9682 -5.2251 -1.3805 33 1 4.8507 -5.5900 0.1403 34 1 -0.1185 -8.4138 0.8874 35 1 0.8792 -5.0863 0.9713 36 1 0.9946 -5.1578 -0.8094 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397717824.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:46 Heat of formation + Delta-G solvation = -12.168790 kcal Electronic energy + Delta-G solvation = -19284.088571 eV Core-core repulsion = 16346.510311 eV Total energy + Delta-G solvation = -2937.578260 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.80933 -40.11346 -38.43726 -35.14470 -34.41226 -33.13690 -32.11089 -29.75630 -28.56434 -27.02248 -25.50499 -23.77175 -23.13030 -21.54851 -20.82246 -18.60328 -18.37803 -17.69041 -16.96592 -16.74670 -16.41595 -16.32022 -15.71781 -15.02510 -14.64535 -14.33411 -14.25941 -14.09822 -13.85269 -13.60608 -13.42012 -13.24019 -13.04964 -12.82811 -12.74913 -12.45753 -12.36941 -11.68790 -11.28255 -11.08505 -10.88153 -10.73685 -10.59546 -10.16582 -10.04498 -9.44797 -8.19137 -6.30768 -0.31159 0.28711 1.41416 1.43791 1.51386 1.75104 2.05237 2.41706 2.86770 3.13540 3.16011 3.69942 3.86559 3.97656 4.06571 4.08882 4.33687 4.40700 4.50938 4.59983 4.61996 4.76057 4.77354 4.89359 4.98151 5.12015 5.15936 5.18223 5.24994 5.33340 5.41552 5.54391 5.65196 5.75570 5.83281 6.25862 6.62108 6.76687 6.83372 7.14541 7.38854 8.90736 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036191 B = 0.005021 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.476919 B = 5574.780018 C = 6127.463092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.082 4.082 4 C -0.128 4.128 5 C 0.081 3.919 6 N -0.472 5.472 7 C 0.049 3.951 8 C 0.556 3.444 9 O -0.577 6.577 10 N -0.601 5.601 11 C 0.109 3.891 12 C -0.121 4.121 13 C 0.038 3.962 14 H 0.017 0.983 15 C -0.532 4.532 16 H 0.065 0.935 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.961 3.039 20 H -0.262 1.262 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.143 3.857 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.176 0.824 28 H 0.186 0.814 29 H 0.196 0.804 30 H 0.119 0.881 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.263 0.737 35 H 0.024 0.976 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.524 20.051 -1.048 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.108 4.108 4 C -0.147 4.147 5 C -0.080 4.080 6 N -0.183 5.183 7 C -0.086 4.086 8 C 0.345 3.655 9 O -0.459 6.459 10 N -0.332 5.332 11 C -0.013 4.013 12 C -0.159 4.159 13 C 0.018 3.982 14 H 0.035 0.965 15 C -0.570 4.570 16 H 0.083 0.917 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.786 3.214 20 H -0.187 1.187 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.020 3.980 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.194 0.806 28 H 0.203 0.797 29 H 0.213 0.787 30 H 0.137 0.863 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.113 19.182 -1.001 20.851 hybrid contribution -1.275 -0.629 -0.237 1.441 sum 6.838 18.553 -1.238 19.812 Atomic orbital electron populations 1.20939 0.89537 1.03438 1.02980 1.21105 0.98480 0.92909 0.96635 1.21962 0.94950 0.97707 0.96169 1.22860 0.94905 1.00806 0.96128 1.23595 1.02081 0.87210 0.95088 1.67680 1.06406 1.33208 1.11015 1.20661 0.90811 0.92352 1.04800 1.18373 0.86279 0.83492 0.77361 1.90670 1.14715 1.87132 1.53334 1.48837 1.10250 1.05545 1.68524 1.22763 0.78643 0.98322 1.01536 1.22865 0.98713 0.93806 1.00487 1.19665 0.90523 0.91845 0.96124 0.96494 1.21389 1.13949 1.08702 1.12966 0.91658 1.25903 0.95708 1.00916 0.96325 1.70089 1.18238 1.39125 1.28627 0.85568 0.77864 0.79169 0.78849 1.18706 1.21184 1.19808 1.21973 0.97729 0.80466 0.97832 0.91383 0.91782 0.88924 0.80638 0.79703 0.78693 0.86294 0.91981 0.91891 0.89099 0.92853 0.95750 0.95550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.05 8.73 71.23 0.62 -2.43 16 2 C -0.09 -2.36 5.93 -19.52 -0.12 -2.48 16 3 C -0.08 -1.36 9.83 22.45 0.22 -1.14 16 4 C -0.13 -1.63 10.11 22.44 0.23 -1.40 16 5 C 0.08 1.43 11.18 84.83 0.95 2.38 16 6 N -0.47 -13.36 6.58 -184.91 -1.22 -14.58 16 7 C 0.05 1.67 6.71 41.90 0.28 1.95 16 8 C 0.56 24.44 7.78 86.88 0.68 25.11 16 9 O -0.58 -28.38 13.64 -3.77 -0.05 -28.44 16 10 N -0.60 -27.39 3.33 -814.79 -2.71 -30.10 16 11 C 0.11 4.08 6.04 86.86 0.52 4.61 16 12 C -0.12 -4.88 6.50 31.99 0.21 -4.67 16 13 C 0.04 1.95 2.77 -10.35 -0.03 1.92 16 14 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 15 C -0.53 -29.67 8.38 25.60 0.21 -29.45 16 16 H 0.07 3.49 7.76 -2.91 -0.02 3.47 16 17 C 0.01 0.62 5.36 84.66 0.45 1.07 16 18 N -0.92 -55.69 12.77 21.45 0.27 -55.42 16 19 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C 0.14 7.67 5.78 86.73 0.50 8.17 16 24 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.06 2.24 5.87 -2.39 -0.01 2.23 16 26 H 0.09 1.74 8.05 -2.39 -0.02 1.72 16 27 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 28 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 29 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.12 3.95 5.73 -2.38 -0.01 3.94 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.06 2.54 8.03 -2.39 -0.02 2.52 16 33 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.03 1.55 7.82 -2.39 -0.02 1.53 16 Total: -1.00 -73.93 298.73 4.13 -69.80 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.08 Total: 8.61 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 4.73 Total: 3.65 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -3.65 Total: -100.10 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.05 Total: -28.44 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -73.93 4.13 -69.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397717824.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.633 kcal (2) G-P(sol) polarization free energy of solvation -73.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds