Wall clock time and date at job start Mon Mar 30 2020 04:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38175 * 120.50200 * 2 1 4 4 N 1.31793 * 120.89444 * 180.29249 * 3 2 1 5 5 C 1.31831 * 122.05301 * 359.71650 * 4 3 2 6 6 C 1.38125 * 120.89124 * 359.97438 * 5 4 3 7 7 C 1.39801 * 120.49833 * 179.71070 * 2 1 3 8 8 C 1.48152 * 120.92113 * 359.97438 * 7 2 1 9 9 O 1.21508 * 119.99952 * 42.77936 * 8 7 2 10 10 N 1.34769 * 119.99807 * 222.78014 * 8 7 2 11 11 C 1.47427 * 125.65096 * 355.20225 * 10 8 7 12 12 C 1.54912 * 104.83536 * 155.91247 * 11 10 8 13 13 C 1.55153 * 101.58039 * 37.00771 * 12 11 10 14 14 H 1.08997 * 110.71928 * 83.04338 * 13 12 11 15 15 C 1.50699 * 110.71779 * 206.13804 * 13 12 11 16 16 H 1.08000 * 120.00510 * 357.56207 * 15 13 12 17 17 C 1.37879 * 119.99795 * 177.28306 * 15 13 12 18 18 N 1.31517 * 120.00113 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00016 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47092 * 89.99813 * 19 17 15 21 21 H 1.48498 * 109.47035 * 210.00354 * 19 17 15 22 22 H 1.48503 * 109.46995 * 330.00222 * 19 17 15 23 23 C 1.47317 * 125.61449 * 175.43061 * 10 8 7 24 24 H 1.08998 * 109.47158 * 264.49438 * 1 2 3 25 25 H 1.09002 * 109.47073 * 24.49105 * 1 2 3 26 26 H 1.08993 * 109.47344 * 144.49245 * 1 2 3 27 27 H 1.07997 * 119.54902 * 0.02780 * 3 2 1 28 28 H 1.07993 * 119.55799 * 179.97438 * 5 4 3 29 29 H 1.08003 * 120.50056 * 180.02562 * 6 5 4 30 30 H 1.08996 * 110.36660 * 37.06846 * 11 10 8 31 31 H 1.09001 * 110.36498 * 274.74796 * 11 10 8 32 32 H 1.09002 * 110.99707 * 278.93264 * 12 11 10 33 33 H 1.08992 * 111.03712 * 155.10095 * 12 11 10 34 34 H 0.97002 * 119.99758 * 179.97438 * 18 17 15 35 35 H 1.08995 * 110.06803 * 61.67768 * 23 10 8 36 36 H 1.09004 * 109.85146 * 300.41257 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1905 0.0000 4 7 3.5262 1.1996 -0.0058 5 6 4.2335 0.0871 -0.0062 6 6 3.6137 -1.1473 -0.0001 7 6 2.2165 -1.2046 0.0061 8 6 1.5078 -2.5055 0.0132 9 8 0.5386 -2.6733 -0.7002 10 7 1.9380 -3.5029 0.8110 11 6 3.1515 -3.4713 1.6477 12 6 2.8825 -4.4986 2.7756 13 6 2.1101 -5.6056 2.0108 14 1 2.8017 -6.2781 1.5034 15 6 1.2130 -6.3736 2.9470 16 1 1.2080 -6.1417 4.0018 17 6 0.3942 -7.3685 2.4560 18 7 0.3966 -7.6475 1.1708 19 14 -0.7173 -8.3209 3.6166 20 1 -2.0300 -7.6344 3.7195 21 1 -0.9174 -9.6961 3.0930 22 1 -0.0879 -8.3894 4.9599 23 6 1.2755 -4.8068 0.9874 24 1 -0.3633 -0.0986 1.0229 25 1 -0.3633 0.9352 -0.4260 26 1 -0.3633 -0.8365 -0.5968 27 1 1.6692 2.1263 0.0005 28 1 5.3121 0.1415 -0.0115 29 1 4.1994 -2.0548 -0.0001 30 1 3.2968 -2.4760 2.0677 31 1 4.0226 -3.7684 1.0638 32 1 2.2653 -4.0631 3.5614 33 1 3.8164 -4.8846 3.1840 34 1 -0.1792 -8.3477 0.8255 35 1 1.2428 -5.3411 0.0380 36 1 0.2645 -4.6599 1.3676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397730794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:10 Heat of formation + Delta-G solvation = -3.777215 kcal Electronic energy + Delta-G solvation = -19274.248676 eV Core-core repulsion = 16337.034302 eV Total energy + Delta-G solvation = -2937.214374 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63739 -38.90040 -36.85268 -33.42479 -33.24158 -32.12901 -30.49657 -28.18040 -27.41837 -25.45446 -24.21246 -22.42233 -22.17435 -19.91255 -19.26995 -17.33069 -16.61447 -16.52118 -15.66832 -15.47185 -14.95947 -14.55199 -14.37827 -14.10454 -13.61565 -13.42134 -12.74647 -12.62481 -12.58328 -12.24503 -12.09248 -11.78400 -11.56599 -11.43743 -10.99676 -10.67666 -10.61660 -10.05632 -10.03007 -9.70531 -9.37019 -9.22665 -9.12965 -8.96602 -8.57284 -7.98467 -6.16572 -4.21546 0.87776 1.02461 3.03411 3.24492 3.32329 3.33964 3.43611 3.78330 4.33756 4.34127 4.61553 4.74518 4.81843 4.95157 5.16880 5.29047 5.38932 5.53859 5.59389 5.65060 5.72363 5.76587 5.82388 6.03175 6.14885 6.37067 6.38516 6.58215 6.62838 6.76080 6.85149 6.92272 7.37648 7.59549 7.81326 7.84129 8.06762 8.21488 8.52872 8.81827 9.44858 10.93332 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.005017 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.995051 B = 5579.621611 C = 5956.850907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C 0.091 3.909 4 N -0.475 5.475 5 C 0.085 3.915 6 C -0.140 4.140 7 C -0.075 4.075 8 C 0.561 3.439 9 O -0.537 6.537 10 N -0.603 5.603 11 C 0.095 3.905 12 C -0.129 4.129 13 C 0.045 3.955 14 H 0.042 0.958 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.126 3.874 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.142 0.858 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.264 0.736 35 H 0.065 0.935 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 13.112 -0.626 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.066 4.066 4 N -0.184 5.184 5 C -0.071 4.071 6 C -0.161 4.161 7 C -0.086 4.086 8 C 0.348 3.652 9 O -0.416 6.416 10 N -0.335 5.335 11 C -0.028 4.028 12 C -0.167 4.167 13 C 0.026 3.974 14 H 0.060 0.940 15 C -0.558 4.558 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C 0.005 3.995 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.176 0.824 28 H 0.176 0.824 29 H 0.160 0.840 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.712 13.707 -1.187 14.897 hybrid contribution -0.971 -1.398 0.529 1.782 sum 4.742 12.309 -0.658 13.207 Atomic orbital electron populations 1.21026 0.89566 1.04563 1.03555 1.21023 0.98166 0.92479 0.97302 1.22639 0.89791 0.97167 0.97020 1.67508 1.08274 1.31811 1.10768 1.22661 1.00352 0.87269 0.96863 1.22470 0.93943 1.00336 0.99303 1.20395 0.94045 0.94276 0.99884 1.17812 0.84046 0.82748 0.80595 1.90711 1.27732 1.81798 1.41320 1.48972 1.26116 1.16465 1.41905 1.22508 0.87390 0.99969 0.92978 1.22887 1.00642 0.96714 0.96456 1.19749 0.93867 0.91349 0.92436 0.93992 1.21006 1.23131 1.17708 0.93961 0.92033 1.25042 0.96894 0.96760 0.95172 1.69939 1.38735 1.31436 1.12218 0.86541 0.80976 0.79231 0.80996 1.20553 1.21113 1.19778 1.22607 0.97127 0.78877 1.00869 0.90846 0.91252 0.88193 0.82404 0.82353 0.84028 0.91837 0.91881 0.91469 0.91270 0.92593 0.91682 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.56 36.01 0.34 -1.36 16 2 C -0.09 -1.22 5.93 -104.06 -0.62 -1.84 16 3 C 0.09 1.12 10.84 -17.59 -0.19 0.93 16 4 N -0.48 -6.14 10.33 -13.31 -0.14 -6.28 16 5 C 0.09 0.99 11.17 -17.59 -0.20 0.79 16 6 C -0.14 -1.81 8.12 -39.03 -0.32 -2.13 16 7 C -0.07 -1.17 5.36 -104.64 -0.56 -1.73 16 8 C 0.56 10.87 7.15 -12.19 -0.09 10.79 16 9 O -0.54 -12.06 14.96 5.36 0.08 -11.98 16 10 N -0.60 -11.84 3.33 -171.28 -0.57 -12.41 16 11 C 0.09 1.52 5.31 -2.53 -0.01 1.50 16 12 C -0.13 -2.35 6.50 -24.58 -0.16 -2.51 16 13 C 0.05 1.04 2.83 -89.94 -0.25 0.79 16 14 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 15 C -0.52 -13.43 8.39 -34.44 -0.29 -13.72 16 16 H 0.06 1.56 7.77 -52.49 -0.41 1.15 16 17 C 0.06 1.72 5.34 -17.82 -0.10 1.62 16 18 N -0.89 -24.69 12.56 55.43 0.70 -24.00 16 19 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 23 C 0.13 2.95 5.62 -2.90 -0.02 2.93 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 26 H 0.10 1.60 5.67 -51.93 -0.29 1.31 16 27 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.14 1.63 6.25 -52.48 -0.33 1.30 16 30 H 0.06 0.89 6.86 -51.93 -0.36 0.54 16 31 H 0.06 0.89 7.41 -51.93 -0.38 0.51 16 32 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.06 1.68 8.07 -51.93 -0.42 1.26 16 36 H 0.06 1.64 7.81 -51.93 -0.41 1.23 16 LS Contribution 298.96 15.07 4.51 4.51 Total: -1.00 -30.00 298.96 -7.58 -37.58 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.68 Total: 0.95 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.45 Total: -3.94 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.01 Total: -42.68 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.00 -7.58 -37.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397730794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.808 kcal (2) G-P(sol) polarization free energy of solvation -30.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds