Wall clock time and date at job start Mon Mar 30 2020 04:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38175 * 120.50200 * 2 1 4 4 N 1.31793 * 120.89444 * 180.29249 * 3 2 1 5 5 C 1.31831 * 122.05301 * 359.71650 * 4 3 2 6 6 C 1.38125 * 120.89124 * 359.97438 * 5 4 3 7 7 C 1.39801 * 120.49833 * 179.71070 * 2 1 3 8 8 C 1.48152 * 120.92113 * 359.97438 * 7 2 1 9 9 O 1.21508 * 119.99952 * 42.77936 * 8 7 2 10 10 N 1.34769 * 119.99807 * 222.78014 * 8 7 2 11 11 C 1.47427 * 125.65096 * 355.20225 * 10 8 7 12 12 C 1.54912 * 104.83536 * 155.91247 * 11 10 8 13 13 C 1.55153 * 101.58039 * 37.00771 * 12 11 10 14 14 H 1.08997 * 110.71928 * 83.04338 * 13 12 11 15 15 C 1.50699 * 110.71779 * 206.13804 * 13 12 11 16 16 H 1.08000 * 120.00510 * 357.56207 * 15 13 12 17 17 C 1.37879 * 119.99795 * 177.28306 * 15 13 12 18 18 N 1.31517 * 120.00113 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00016 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47092 * 89.99813 * 19 17 15 21 21 H 1.48498 * 109.47035 * 210.00354 * 19 17 15 22 22 H 1.48503 * 109.46995 * 330.00222 * 19 17 15 23 23 C 1.47317 * 125.61449 * 175.43061 * 10 8 7 24 24 H 1.08998 * 109.47158 * 264.49438 * 1 2 3 25 25 H 1.09002 * 109.47073 * 24.49105 * 1 2 3 26 26 H 1.08993 * 109.47344 * 144.49245 * 1 2 3 27 27 H 1.07997 * 119.54902 * 0.02780 * 3 2 1 28 28 H 1.07993 * 119.55799 * 179.97438 * 5 4 3 29 29 H 1.08003 * 120.50056 * 180.02562 * 6 5 4 30 30 H 1.08996 * 110.36660 * 37.06846 * 11 10 8 31 31 H 1.09001 * 110.36498 * 274.74796 * 11 10 8 32 32 H 1.09002 * 110.99707 * 278.93264 * 12 11 10 33 33 H 1.08992 * 111.03712 * 155.10095 * 12 11 10 34 34 H 0.97002 * 119.99758 * 179.97438 * 18 17 15 35 35 H 1.08995 * 110.06803 * 61.67768 * 23 10 8 36 36 H 1.09004 * 109.85146 * 300.41257 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1905 0.0000 4 7 3.5262 1.1996 -0.0058 5 6 4.2335 0.0871 -0.0062 6 6 3.6137 -1.1473 -0.0001 7 6 2.2165 -1.2046 0.0061 8 6 1.5078 -2.5055 0.0132 9 8 0.5386 -2.6733 -0.7002 10 7 1.9380 -3.5029 0.8110 11 6 3.1515 -3.4713 1.6477 12 6 2.8825 -4.4986 2.7756 13 6 2.1101 -5.6056 2.0108 14 1 2.8017 -6.2781 1.5034 15 6 1.2130 -6.3736 2.9470 16 1 1.2080 -6.1417 4.0018 17 6 0.3942 -7.3685 2.4560 18 7 0.3966 -7.6475 1.1708 19 14 -0.7173 -8.3209 3.6166 20 1 -2.0300 -7.6344 3.7195 21 1 -0.9174 -9.6961 3.0930 22 1 -0.0879 -8.3894 4.9599 23 6 1.2755 -4.8068 0.9874 24 1 -0.3633 -0.0986 1.0229 25 1 -0.3633 0.9352 -0.4260 26 1 -0.3633 -0.8365 -0.5968 27 1 1.6692 2.1263 0.0005 28 1 5.3121 0.1415 -0.0115 29 1 4.1994 -2.0548 -0.0001 30 1 3.2968 -2.4760 2.0677 31 1 4.0226 -3.7684 1.0638 32 1 2.2653 -4.0631 3.5614 33 1 3.8164 -4.8846 3.1840 34 1 -0.1792 -8.3477 0.8255 35 1 1.2428 -5.3411 0.0380 36 1 0.2645 -4.6599 1.3676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397730794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:10 Heat of formation + Delta-G solvation = -22.630158 kcal Electronic energy + Delta-G solvation = -19275.066201 eV Core-core repulsion = 16337.034302 eV Total energy + Delta-G solvation = -2938.031899 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82978 -40.27359 -38.47500 -35.09201 -34.47462 -33.40419 -32.07198 -29.83221 -28.51019 -27.13007 -25.64984 -23.80984 -23.26620 -21.56708 -20.72167 -18.73518 -18.42788 -17.68938 -17.27880 -16.69420 -16.42355 -16.12073 -15.68456 -15.22367 -15.05945 -14.40681 -14.38668 -14.22827 -13.74505 -13.73147 -13.50955 -13.32238 -13.14479 -12.82919 -12.60062 -12.45427 -12.33142 -11.73181 -11.40968 -11.18761 -11.05107 -10.78028 -10.62728 -10.38622 -9.93275 -9.64858 -8.20782 -6.31755 -0.23684 0.08000 1.40584 1.42336 1.52049 1.60111 1.96568 2.40534 2.76004 3.12734 3.31243 3.51015 3.78254 3.81327 3.90540 3.97805 4.24948 4.30330 4.43411 4.52783 4.58844 4.63871 4.66945 4.78035 4.85837 4.89113 5.07369 5.09370 5.17478 5.24901 5.31410 5.51549 5.63102 5.64109 5.82632 6.23726 6.53515 6.79077 6.89805 6.99913 7.38338 8.88729 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.005017 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.995051 B = 5579.621611 C = 5956.850907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C 0.099 3.901 4 N -0.484 5.484 5 C 0.095 3.905 6 C -0.137 4.137 7 C -0.097 4.097 8 C 0.557 3.443 9 O -0.580 6.580 10 N -0.608 5.608 11 C 0.099 3.901 12 C -0.119 4.119 13 C 0.037 3.963 14 H 0.022 0.978 15 C -0.531 4.531 16 H 0.066 0.934 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.956 3.044 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.260 1.260 23 C 0.145 3.855 24 H 0.072 0.928 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.190 0.810 28 H 0.197 0.803 29 H 0.157 0.843 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.262 0.738 35 H 0.027 0.973 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.893 15.294 0.608 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.102 4.102 3 C -0.058 4.058 4 N -0.193 5.193 5 C -0.061 4.061 6 C -0.157 4.157 7 C -0.108 4.108 8 C 0.347 3.653 9 O -0.462 6.462 10 N -0.340 5.340 11 C -0.022 4.022 12 C -0.156 4.156 13 C 0.018 3.982 14 H 0.040 0.960 15 C -0.569 4.569 16 H 0.084 0.916 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.782 3.218 20 H -0.207 1.207 21 H -0.210 1.210 22 H -0.184 1.184 23 C 0.023 3.977 24 H 0.091 0.909 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.207 0.793 28 H 0.214 0.786 29 H 0.175 0.825 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 7.738 15.911 0.073 17.693 hybrid contribution -1.565 -2.020 0.112 2.557 sum 6.173 13.891 0.185 15.202 Atomic orbital electron populations 1.20970 0.89603 1.04734 1.03096 1.21181 0.98420 0.92688 0.97895 1.23056 0.89773 0.97464 0.95461 1.67631 1.08474 1.32347 1.10799 1.23242 1.01981 0.86137 0.94748 1.22645 0.92541 1.01784 0.98727 1.20194 0.95354 0.92336 1.02946 1.18513 0.83567 0.83849 0.79406 1.90685 1.29793 1.82740 1.42974 1.48984 1.27092 1.15132 1.42752 1.22719 0.86463 1.01028 0.92023 1.22818 1.00999 0.95258 0.96568 1.19688 0.93688 0.92356 0.92506 0.95994 1.21428 1.23194 1.17704 0.94588 0.91629 1.25850 0.98433 0.97986 0.96462 1.70079 1.39786 1.32134 1.13964 0.85574 0.78975 0.77694 0.79581 1.20697 1.21040 1.18361 1.22008 0.95906 0.80936 0.98850 0.90896 0.88021 0.91755 0.79341 0.78615 0.82530 0.88772 0.89194 0.91799 0.88466 0.92891 0.95442 0.95601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.56 71.24 0.68 -2.59 16 2 C -0.10 -2.62 5.93 -19.50 -0.12 -2.73 16 3 C 0.10 2.11 10.84 84.68 0.92 3.03 16 4 N -0.48 -10.58 10.33 -196.01 -2.03 -12.60 16 5 C 0.10 1.80 11.17 84.67 0.95 2.75 16 6 C -0.14 -3.10 8.12 22.63 0.18 -2.92 16 7 C -0.10 -2.92 5.36 -19.88 -0.11 -3.03 16 8 C 0.56 22.06 7.15 86.88 0.62 22.68 16 9 O -0.58 -27.61 14.96 -3.74 -0.06 -27.67 16 10 N -0.61 -24.19 3.33 -814.09 -2.71 -26.90 16 11 C 0.10 2.95 5.31 86.86 0.46 3.41 16 12 C -0.12 -4.13 6.50 31.99 0.21 -3.92 16 13 C 0.04 1.74 2.83 -10.35 -0.03 1.71 16 14 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 15 C -0.53 -27.91 8.39 25.60 0.21 -27.70 16 16 H 0.07 3.31 7.77 -2.91 -0.02 3.29 16 17 C 0.01 0.67 5.34 84.65 0.45 1.12 16 18 N -0.92 -53.52 12.56 21.45 0.27 -53.25 16 19 Si 0.96 42.89 29.54 68.60 2.03 44.92 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 23 C 0.15 7.20 5.62 86.67 0.49 7.69 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 25 H 0.10 1.87 8.06 -2.39 -0.02 1.85 16 26 H 0.06 2.16 5.67 -2.39 -0.01 2.14 16 27 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 28 H 0.20 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.16 3.01 6.25 -2.91 -0.02 2.99 16 30 H 0.09 2.29 6.86 -2.39 -0.02 2.28 16 31 H 0.09 2.24 7.41 -2.39 -0.02 2.22 16 32 H 0.06 2.26 8.03 -2.39 -0.02 2.24 16 33 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 36 H 0.03 1.43 7.81 -2.38 -0.02 1.41 16 Total: -1.00 -69.23 298.96 3.50 -65.72 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.08 Total: 10.28 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 4.92 Total: -0.50 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -4.47 Total: -92.76 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.06 Total: -27.67 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -69.23 3.50 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397730794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.093 kcal (2) G-P(sol) polarization free energy of solvation -69.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds