Wall clock time and date at job start Mon Mar 30 2020 04:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48504 * 109.47042 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47435 * 300.00129 * 3 2 1 6 6 H 1.48504 * 109.46962 * 60.00490 * 3 2 1 7 7 C 1.39932 * 119.99472 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99565 * 192.60818 * 7 2 1 9 9 C 1.41404 * 120.00123 * 12.61400 * 7 2 1 10 10 C 1.40783 * 120.20706 * 207.66464 * 9 7 2 11 11 C 1.37642 * 119.88261 * 179.97438 * 10 9 7 12 12 C 1.38534 * 120.32503 * 0.27857 * 11 10 9 13 13 C 1.39249 * 120.42254 * 359.44218 * 12 11 10 14 14 N 1.39942 * 119.94166 * 180.25594 * 13 12 11 15 15 C 1.34777 * 120.00128 * 34.05964 * 14 13 12 16 16 O 1.21289 * 119.99648 * 5.13109 * 15 14 13 17 17 C 1.50690 * 120.00033 * 185.13462 * 15 14 13 18 18 C 1.53003 * 109.47026 * 177.18161 * 17 15 14 19 19 N 1.46900 * 115.55025 * 272.67124 * 18 17 15 20 20 C 1.53007 * 117.49942 * 126.96889 * 18 17 15 21 21 C 1.53000 * 59.99878 * 252.50919 * 20 18 17 22 22 C 1.38285 * 120.10809 * 0.55787 * 13 12 11 23 23 H 0.97001 * 119.99762 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.05573 * 0.02562 * 10 9 7 25 25 H 1.08003 * 119.83553 * 180.02562 * 11 10 9 26 26 H 1.07998 * 119.78769 * 179.72465 * 12 11 10 27 27 H 0.97000 * 119.99896 * 214.05150 * 14 13 12 28 28 H 1.08996 * 109.47358 * 297.17692 * 17 15 14 29 29 H 1.08999 * 109.47208 * 57.18412 * 17 15 14 30 30 H 1.00897 * 111.00142 * 304.00313 * 19 18 17 31 31 H 1.00904 * 111.00037 * 67.95803 * 19 18 17 32 32 H 1.08996 * 117.49606 * 0.02562 * 20 18 17 33 33 H 1.08994 * 117.49626 * 145.01818 * 20 18 17 34 34 H 1.09001 * 117.49822 * 252.51056 * 21 20 18 35 35 H 1.08998 * 117.49904 * 107.48565 * 21 20 18 36 36 H 1.08001 * 120.15640 * 179.74755 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8836 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0683 -1.2233 0.2036 9 6 1.3264 -2.4216 -0.2685 10 6 1.8000 -3.6348 0.2659 11 6 1.1312 -4.8083 0.0012 12 6 -0.0034 -4.8027 -0.7937 13 6 -0.4868 -3.6095 -1.3243 14 7 -1.6368 -3.6148 -2.1216 15 6 -2.6304 -4.4886 -1.8654 16 8 -2.5701 -5.2063 -0.8895 17 6 -3.8162 -4.5739 -2.7914 18 6 -4.7559 -5.6837 -2.3158 19 7 -4.4563 -7.0289 -2.8244 20 6 -6.2267 -5.3205 -2.1014 21 6 -5.3178 -5.5738 -0.8970 22 6 0.1714 -2.4202 -1.0698 23 1 -0.4850 0.8401 0.0004 24 1 2.6862 -3.6446 0.8831 25 1 1.4950 -5.7386 0.4119 26 1 -0.5189 -5.7292 -0.9994 27 1 -1.7189 -2.9894 -2.8586 28 1 -4.3477 -3.6224 -2.7898 29 1 -3.4729 -4.7967 -3.8017 30 1 -4.4363 -7.0380 -3.8331 31 1 -3.5888 -7.3750 -2.4424 32 1 -6.5248 -4.2910 -2.2997 33 1 -6.9721 -6.0796 -2.3379 34 1 -5.4655 -6.4997 -0.3410 35 1 -5.0180 -4.7109 -0.3024 36 1 -0.2005 -1.4948 -1.4843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398221115.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:39 Heat of formation + Delta-G solvation = 4.782821 kcal Electronic energy + Delta-G solvation = -18853.035122 eV Core-core repulsion = 15916.191939 eV Total energy + Delta-G solvation = -2936.843183 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.91985 -37.96789 -36.77815 -34.21586 -33.28375 -31.13992 -29.97434 -29.45733 -27.64290 -25.25380 -22.38566 -21.80139 -21.17033 -19.81061 -19.25037 -17.41922 -16.82741 -16.03681 -15.74328 -15.28119 -14.91629 -14.75487 -14.53068 -14.09613 -13.53219 -13.14335 -12.79951 -12.58216 -12.37366 -12.09017 -11.72962 -11.34916 -11.21781 -11.06786 -10.79377 -10.53587 -10.46157 -9.99890 -9.91241 -9.83774 -9.45602 -9.22824 -8.96558 -8.79761 -7.36785 -6.96948 -6.70845 -4.40224 2.56276 2.83216 3.06110 3.11598 3.17066 3.32122 3.50032 3.92854 4.05636 4.32899 4.62607 4.66986 4.92747 4.97411 5.31683 5.48839 5.64605 5.66627 5.69946 5.75839 6.12092 6.25183 6.29620 6.60558 6.67871 6.88225 7.04429 7.05129 7.14054 7.24939 7.36196 7.60313 7.68432 7.90064 8.01555 8.14301 8.31465 8.56059 8.76361 8.88108 8.94316 10.21411 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029982 B = 0.004729 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.684806 B = 5919.168759 C = 6531.363208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.225 4.225 11 C -0.088 4.088 12 C -0.224 4.224 13 C 0.144 3.856 14 N -0.667 5.667 15 C 0.503 3.497 16 O -0.515 6.515 17 C -0.134 4.134 18 C 0.050 3.950 19 N -0.809 5.809 20 C -0.167 4.167 21 C -0.134 4.134 22 C -0.180 4.180 23 H 0.278 0.722 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.399 0.601 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.339 0.661 31 H 0.350 0.650 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.860 -4.226 -7.371 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.495 4.495 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.245 4.245 11 C -0.107 4.107 12 C -0.245 4.245 13 C 0.052 3.948 14 N -0.310 5.310 15 C 0.289 3.711 16 O -0.390 6.390 17 C -0.177 4.177 18 C -0.044 4.044 19 N -0.339 5.339 20 C -0.205 4.205 21 C -0.171 4.171 22 C -0.201 4.201 23 H 0.088 0.912 24 H 0.112 0.888 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.233 0.767 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.720 -4.844 -6.314 11.805 hybrid contribution 1.157 1.664 -0.761 2.165 sum -7.563 -3.179 -7.075 10.834 Atomic orbital electron populations 1.69822 1.07432 1.28761 1.36928 1.25878 0.94781 1.01178 0.92365 0.86251 0.80892 0.81029 0.78464 1.18459 1.19863 1.20036 1.19567 0.96421 0.90521 1.42968 0.90375 1.17380 0.90753 0.92203 0.88002 1.21071 1.03279 0.93291 1.06838 1.20429 0.95432 0.96640 0.98218 1.20293 1.00084 0.95640 1.08492 1.17632 0.86702 0.94623 0.95863 1.43525 1.17332 1.37088 1.33105 1.20538 0.83469 0.80749 0.86358 1.90720 1.78166 1.42233 1.27866 1.21851 0.95478 1.00973 0.99356 1.20825 0.94011 0.88235 1.01340 1.58539 1.42078 1.20897 1.12341 1.23218 0.92125 1.01787 1.03372 1.22877 1.00781 1.03446 0.90034 1.21105 1.00652 0.94632 1.03756 0.91155 0.88833 0.89042 0.88168 0.76732 0.88447 0.89072 0.84866 0.83541 0.88988 0.88414 0.88465 0.88669 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.65 10.86 55.55 0.60 -20.05 16 2 C 0.07 1.85 5.22 -17.34 -0.09 1.76 16 3 Si 0.91 18.53 29.58 -169.99 -5.03 13.51 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.25 9.06 -37.74 -0.34 -12.60 16 8 H 0.08 1.98 7.88 -52.49 -0.41 1.57 16 9 C 0.12 3.18 5.55 -106.85 -0.59 2.59 16 10 C -0.22 -5.61 9.79 -38.84 -0.38 -5.99 16 11 C -0.09 -2.07 10.02 -39.69 -0.40 -2.47 16 12 C -0.22 -5.30 8.66 -39.10 -0.34 -5.64 16 13 C 0.14 3.34 6.25 -83.76 -0.52 2.81 16 14 N -0.67 -12.30 5.33 -9.91 -0.05 -12.35 16 15 C 0.50 8.70 7.43 -10.99 -0.08 8.62 16 16 O -0.51 -10.73 12.54 5.55 0.07 -10.66 16 17 C -0.13 -1.64 5.92 -27.89 -0.17 -1.80 16 18 C 0.05 0.62 2.23 -131.60 -0.29 0.33 16 19 N -0.81 -9.43 9.70 0.75 0.01 -9.42 16 20 C -0.17 -1.84 10.10 -26.73 -0.27 -2.11 16 21 C -0.13 -1.83 8.80 -26.73 -0.24 -2.06 16 22 C -0.18 -4.57 8.57 -38.69 -0.33 -4.91 16 23 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 24 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 25 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 26 H 0.10 2.32 6.44 -52.49 -0.34 1.98 16 27 H 0.40 6.06 8.82 -40.82 -0.36 5.70 16 28 H 0.10 1.04 7.89 -51.93 -0.41 0.63 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.34 3.19 9.08 -39.29 -0.36 2.83 16 31 H 0.35 4.44 9.08 -39.29 -0.36 4.09 16 32 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 1.44 7.92 -51.93 -0.41 1.03 16 36 H 0.12 3.17 6.20 -52.49 -0.33 2.84 16 LS Contribution 307.13 15.07 4.63 4.63 Total: -1.00 -29.89 307.13 -8.45 -38.34 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -4.64 Total: 17.48 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -4.04 Total: -21.46 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.56 Total: -41.83 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.89 -8.45 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398221115.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.123 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds