Wall clock time and date at job start Mon Mar 30 2020 04:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 120.00054 * 2 1 4 4 H 1.48504 * 109.47042 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47435 * 300.00129 * 3 2 1 6 6 H 1.48504 * 109.46962 * 60.00490 * 3 2 1 7 7 C 1.39932 * 119.99472 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99565 * 192.60818 * 7 2 1 9 9 C 1.41404 * 120.00123 * 12.61400 * 7 2 1 10 10 C 1.40783 * 120.20706 * 207.66464 * 9 7 2 11 11 C 1.37642 * 119.88261 * 179.97438 * 10 9 7 12 12 C 1.38534 * 120.32503 * 0.27857 * 11 10 9 13 13 C 1.39249 * 120.42254 * 359.44218 * 12 11 10 14 14 N 1.39942 * 119.94166 * 180.25594 * 13 12 11 15 15 C 1.34777 * 120.00128 * 34.05964 * 14 13 12 16 16 O 1.21289 * 119.99648 * 5.13109 * 15 14 13 17 17 C 1.50690 * 120.00033 * 185.13462 * 15 14 13 18 18 C 1.53003 * 109.47026 * 177.18161 * 17 15 14 19 19 N 1.46900 * 115.55025 * 272.67124 * 18 17 15 20 20 C 1.53007 * 117.49942 * 126.96889 * 18 17 15 21 21 C 1.53000 * 59.99878 * 252.50919 * 20 18 17 22 22 C 1.38285 * 120.10809 * 0.55787 * 13 12 11 23 23 H 0.97001 * 119.99762 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.05573 * 0.02562 * 10 9 7 25 25 H 1.08003 * 119.83553 * 180.02562 * 11 10 9 26 26 H 1.07998 * 119.78769 * 179.72465 * 12 11 10 27 27 H 0.97000 * 119.99896 * 214.05150 * 14 13 12 28 28 H 1.08996 * 109.47358 * 297.17692 * 17 15 14 29 29 H 1.08999 * 109.47208 * 57.18412 * 17 15 14 30 30 H 1.00897 * 111.00142 * 304.00313 * 19 18 17 31 31 H 1.00904 * 111.00037 * 67.95803 * 19 18 17 32 32 H 1.08996 * 117.49606 * 0.02562 * 20 18 17 33 33 H 1.08994 * 117.49626 * 145.01818 * 20 18 17 34 34 H 1.09001 * 117.49822 * 252.51056 * 21 20 18 35 35 H 1.08998 * 117.49904 * 107.48565 * 21 20 18 36 36 H 1.08001 * 120.15640 * 179.74755 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8836 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0683 -1.2233 0.2036 9 6 1.3264 -2.4216 -0.2685 10 6 1.8000 -3.6348 0.2659 11 6 1.1312 -4.8083 0.0012 12 6 -0.0034 -4.8027 -0.7937 13 6 -0.4868 -3.6095 -1.3243 14 7 -1.6368 -3.6148 -2.1216 15 6 -2.6304 -4.4886 -1.8654 16 8 -2.5701 -5.2063 -0.8895 17 6 -3.8162 -4.5739 -2.7914 18 6 -4.7559 -5.6837 -2.3158 19 7 -4.4563 -7.0289 -2.8244 20 6 -6.2267 -5.3205 -2.1014 21 6 -5.3178 -5.5738 -0.8970 22 6 0.1714 -2.4202 -1.0698 23 1 -0.4850 0.8401 0.0004 24 1 2.6862 -3.6446 0.8831 25 1 1.4950 -5.7386 0.4119 26 1 -0.5189 -5.7292 -0.9994 27 1 -1.7189 -2.9894 -2.8586 28 1 -4.3477 -3.6224 -2.7898 29 1 -3.4729 -4.7967 -3.8017 30 1 -4.4363 -7.0380 -3.8331 31 1 -3.5888 -7.3750 -2.4424 32 1 -6.5248 -4.2910 -2.2997 33 1 -6.9721 -6.0796 -2.3379 34 1 -5.4655 -6.4997 -0.3410 35 1 -5.0180 -4.7109 -0.3024 36 1 -0.2005 -1.4948 -1.4843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398221115.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:39 Heat of formation + Delta-G solvation = -15.175482 kcal Electronic energy + Delta-G solvation = -18853.900579 eV Core-core repulsion = 15916.191939 eV Total energy + Delta-G solvation = -2937.708640 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34906 -39.41611 -38.21665 -35.92405 -35.07609 -32.08638 -31.57732 -31.14831 -29.15442 -27.18053 -23.48876 -23.27795 -22.97915 -21.39264 -20.40006 -19.23298 -18.27010 -17.47455 -17.12036 -16.56687 -16.49950 -16.22825 -15.97616 -15.25863 -14.96726 -14.85916 -14.46993 -14.19489 -13.68299 -13.45416 -13.22677 -12.88924 -12.78944 -12.63242 -12.29875 -12.20665 -11.83115 -11.72134 -11.49764 -11.24020 -10.96045 -10.78170 -10.51036 -9.80798 -9.30948 -8.78673 -8.57075 -6.38982 0.81873 1.02720 1.39765 1.48713 1.54552 1.80215 2.18666 2.22545 2.76365 2.95591 3.42360 3.62795 3.70698 3.88036 3.98561 4.25946 4.45990 4.56236 4.71231 4.74472 4.77228 4.84129 4.85562 5.09087 5.11822 5.15906 5.22344 5.31974 5.35919 5.79535 5.85362 6.01256 6.08127 6.19333 6.33691 6.53514 6.58461 6.76405 6.93674 6.97226 7.33518 8.36252 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.029982 B = 0.004729 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.684806 B = 5919.168759 C = 6531.363208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.269 1.269 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.091 3.909 10 C -0.246 4.246 11 C -0.088 4.088 12 C -0.235 4.235 13 C 0.150 3.850 14 N -0.664 5.664 15 C 0.500 3.500 16 O -0.553 6.553 17 C -0.121 4.121 18 C 0.044 3.956 19 N -0.811 5.811 20 C -0.138 4.138 21 C -0.160 4.160 22 C -0.201 4.201 23 H 0.286 0.714 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.415 0.585 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.353 0.647 31 H 0.343 0.657 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.862 -3.638 -8.852 13.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.194 1.194 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.088 3.912 10 C -0.266 4.266 11 C -0.107 4.107 12 C -0.256 4.256 13 C 0.057 3.943 14 N -0.309 5.309 15 C 0.289 3.711 16 O -0.430 6.430 17 C -0.163 4.163 18 C -0.050 4.050 19 N -0.341 5.341 20 C -0.175 4.175 21 C -0.198 4.198 22 C -0.223 4.223 23 H 0.097 0.903 24 H 0.119 0.881 25 H 0.136 0.864 26 H 0.123 0.877 27 H 0.251 0.749 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.751 -4.267 -7.836 13.217 hybrid contribution 1.400 1.380 -0.281 1.986 sum -8.352 -2.886 -8.117 11.999 Atomic orbital electron populations 1.69876 1.08866 1.30227 1.36929 1.26728 0.95564 1.04369 0.91205 0.85120 0.79308 0.76136 0.78883 1.18249 1.18628 1.19414 1.19828 0.96629 0.91674 1.44740 0.90554 1.17790 0.91671 0.93101 0.88658 1.21241 1.04099 0.93526 1.07717 1.20749 0.95040 0.97316 0.97583 1.20492 1.00288 0.95991 1.08816 1.17700 0.87603 0.93720 0.95314 1.43550 1.16344 1.38016 1.33006 1.21501 0.84004 0.79193 0.86423 1.90706 1.79013 1.43502 1.29762 1.21888 0.93024 1.02192 0.99218 1.20942 0.95201 0.88657 1.00225 1.58524 1.41642 1.20458 1.13439 1.23282 0.91132 1.03214 0.99891 1.22772 1.03850 1.02269 0.90932 1.21062 1.01311 0.95064 1.04821 0.90305 0.88142 0.86353 0.87713 0.74853 0.86120 0.85928 0.83244 0.84370 0.86959 0.87447 0.89623 0.90789 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.19 10.86 21.82 0.24 -42.95 16 2 C 0.03 1.75 5.22 85.25 0.45 2.20 16 3 Si 0.98 37.80 29.58 68.60 2.03 39.82 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.50 -26.93 9.06 23.46 0.21 -26.72 16 8 H 0.08 3.98 7.88 -2.91 -0.02 3.96 16 9 C 0.09 4.96 5.55 -21.31 -0.12 4.84 16 10 C -0.25 -12.52 9.79 22.75 0.22 -12.30 16 11 C -0.09 -4.15 10.02 22.20 0.22 -3.93 16 12 C -0.23 -11.13 8.66 22.58 0.20 -10.94 16 13 C 0.15 7.01 6.25 38.10 0.24 7.25 16 14 N -0.66 -23.93 5.33 -303.65 -1.62 -25.55 16 15 C 0.50 16.69 7.43 87.65 0.65 17.34 16 16 O -0.55 -22.97 12.54 -3.06 -0.04 -23.01 16 17 C -0.12 -2.60 5.92 29.85 0.18 -2.43 16 18 C 0.04 1.00 2.23 3.53 0.01 1.01 16 19 N -0.81 -17.24 9.70 -151.55 -1.47 -18.71 16 20 C -0.14 -2.63 10.10 30.60 0.31 -2.32 16 21 C -0.16 -4.27 8.80 30.59 0.27 -4.01 16 22 C -0.20 -10.44 8.57 22.85 0.20 -10.24 16 23 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 24 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 25 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 26 H 0.10 4.84 6.44 -2.91 -0.02 4.82 16 27 H 0.41 12.04 8.82 -92.71 -0.82 11.22 16 28 H 0.12 2.11 7.89 -2.39 -0.02 2.09 16 29 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.35 5.65 9.08 -89.70 -0.81 4.84 16 31 H 0.34 8.29 9.08 -89.69 -0.81 7.48 16 32 H 0.11 1.72 8.04 -2.39 -0.02 1.70 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.07 2.26 7.92 -2.39 -0.02 2.24 16 36 H 0.11 6.03 6.20 -2.91 -0.02 6.01 16 Total: -1.00 -65.95 307.13 0.85 -65.10 By element: Atomic # 1 Polarization: 46.86 SS G_CDS: -1.32 Total: 45.54 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 3.03 Total: -40.25 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -2.85 Total: -87.21 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.82 kcal Total: -65.95 0.85 -65.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398221115.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.927 kcal (2) G-P(sol) polarization free energy of solvation -65.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds