Wall clock time and date at job start Mon Mar 30 2020 05:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.53005 * 109.47072 * 119.99796 * 2 1 3 5 5 N 1.46491 * 109.47011 * 64.99991 * 4 2 1 6 6 C 1.46497 * 120.00507 * 269.99958 * 5 4 2 7 7 C 1.50702 * 109.47476 * 270.00552 * 6 5 4 8 8 H 1.08004 * 119.99587 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00475 * 179.97438 * 7 6 5 10 10 N 1.31508 * 119.99611 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99834 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46982 * 60.00666 * 11 9 7 13 13 H 1.48506 * 109.46403 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47285 * 299.99937 * 11 9 7 15 15 C 1.38982 * 119.99925 * 90.00331 * 5 4 2 16 16 C 1.39609 * 120.02495 * 184.99643 * 15 5 4 17 17 N 1.31944 * 120.12206 * 179.97438 * 16 15 5 18 18 C 1.32159 * 120.18640 * 0.02721 * 17 16 15 19 19 C 1.39377 * 120.04762 * 359.97438 * 18 17 16 20 20 C 1.43203 * 120.06275 * 180.02562 * 19 18 17 21 21 N 6.14801 * 149.43249 * 203.28534 * 2 1 3 22 22 N 1.32383 * 120.02369 * 5.02194 * 15 5 4 23 23 H 1.08996 * 109.47449 * 300.00338 * 1 2 3 24 24 H 1.09002 * 109.46750 * 60.00347 * 1 2 3 25 25 H 1.09003 * 109.46682 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47449 * 239.99661 * 2 1 3 27 27 H 1.09001 * 109.47650 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47195 * 300.00009 * 3 2 1 29 29 H 1.09004 * 109.47276 * 59.99243 * 3 2 1 30 30 H 1.09003 * 109.46559 * 304.99994 * 4 2 1 31 31 H 1.08997 * 109.47064 * 185.00590 * 4 2 1 32 32 H 1.09005 * 109.47064 * 30.00062 * 6 5 4 33 33 H 1.08996 * 109.47986 * 150.00336 * 6 5 4 34 34 H 0.96998 * 119.99795 * 180.02562 * 10 9 7 35 35 H 1.08000 * 119.94471 * 0.02562 * 16 15 5 36 36 H 1.07997 * 119.97708 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1327 1.1907 6 6 0.3746 -2.5659 1.7613 7 6 0.5716 -2.9407 3.2076 8 1 1.5508 -2.8643 3.6567 9 6 -0.4983 -3.3811 3.9576 10 7 -1.6906 -3.4746 3.4106 11 14 -0.2539 -3.8464 5.7501 12 1 0.2513 -2.6699 6.5024 13 1 -1.5493 -4.2853 6.3286 14 1 0.7305 -4.9542 5.8443 15 6 2.4971 -3.0610 0.5937 16 6 2.0842 -4.3862 0.4439 17 7 2.8844 -5.2690 -0.1230 18 6 4.0801 -4.9035 -0.5512 19 6 4.4998 -3.5825 -0.4054 20 6 5.7952 -3.1859 -0.8697 21 7 6.8236 -2.8719 -1.2360 22 7 3.6940 -2.6894 0.1671 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6053 -0.2616 2.1370 31 1 3.1263 -0.6442 1.2953 32 1 -0.3484 -1.7531 1.6919 33 1 0.0043 -3.4297 1.2094 34 1 -2.4433 -3.7841 3.9383 35 1 1.1078 -4.6893 0.7919 36 1 4.7324 -5.6289 -1.0143 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401327685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:06 Heat of formation + Delta-G solvation = 64.697474 kcal Electronic energy + Delta-G solvation = -19154.758521 eV Core-core repulsion = 16252.806183 eV Total energy + Delta-G solvation = -2901.952338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09008 -38.96538 -37.75425 -35.74380 -35.27094 -34.36763 -31.67183 -29.60811 -27.97120 -27.26550 -26.17737 -25.06068 -23.11447 -21.11516 -20.09090 -18.70624 -18.58368 -17.87248 -17.09320 -16.50228 -16.36360 -16.02466 -15.39102 -14.87158 -14.66896 -14.36688 -14.26694 -14.15595 -13.78291 -13.60109 -13.36001 -13.09857 -12.95691 -12.79291 -12.67706 -12.50956 -12.41653 -12.06765 -11.91415 -11.83625 -11.53863 -11.51247 -10.77801 -10.58053 -10.16298 -8.60492 -8.09962 -6.31727 -0.56645 0.32282 1.26218 1.43392 1.45572 1.51918 1.79575 2.06422 2.40122 2.48667 2.90634 3.12718 3.41498 3.53912 3.78713 3.98075 4.07198 4.18468 4.27245 4.50873 4.61433 4.72817 4.82935 4.95903 5.01868 5.06509 5.09125 5.19835 5.26198 5.32969 5.46555 5.49479 5.66506 5.88139 6.08299 6.15906 6.43180 6.55951 6.76702 6.93070 7.39506 8.86366 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.007082 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.522535 B = 3952.791066 C = 5098.110172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C -0.136 4.136 4 C 0.131 3.869 5 N -0.574 5.574 6 C 0.260 3.740 7 C -0.548 4.548 8 H 0.049 0.951 9 C 0.027 3.973 10 N -0.916 5.916 11 Si 0.950 3.050 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.276 1.276 15 C 0.368 3.632 16 C 0.025 3.975 17 N -0.410 5.410 18 C 0.025 3.975 19 C 0.183 3.817 20 C 0.298 3.702 21 N -0.414 5.414 22 N -0.497 5.497 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.029 0.971 34 H 0.268 0.732 35 H 0.170 0.830 36 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 3.051 -6.647 9.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.194 4.194 4 C 0.007 3.993 5 N -0.281 5.281 6 C 0.139 3.861 7 C -0.587 4.587 8 H 0.068 0.932 9 C -0.174 4.174 10 N -0.555 5.555 11 Si 0.776 3.224 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.201 1.201 15 C 0.125 3.875 16 C -0.147 4.147 17 N -0.123 5.123 18 C -0.138 4.138 19 C 0.041 3.959 20 C -0.019 4.019 21 N -0.091 5.091 22 N -0.223 5.223 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.187 0.813 36 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.865 3.639 -7.065 10.502 hybrid contribution -0.636 -0.342 1.347 1.528 sum 6.230 3.297 -5.718 9.076 Atomic orbital electron populations 1.21882 0.95108 1.01409 1.01681 1.21423 0.96147 0.97043 0.97525 1.21704 1.00969 0.94176 1.02508 1.21528 1.00156 0.79567 0.98015 1.47089 1.18834 1.05778 1.56420 1.19266 0.79106 0.95973 0.91717 1.21692 0.94895 1.45125 0.96973 0.93240 1.25528 0.94766 0.95168 1.01920 1.69971 1.00381 1.46984 1.38156 0.85737 0.77374 0.78672 0.80656 1.19906 1.20696 1.20104 1.19288 0.87745 0.89825 0.90614 1.23559 1.01645 0.89206 1.00311 1.68412 1.03376 1.34673 1.05790 1.23675 0.94505 0.93872 1.01711 1.17104 0.88428 0.91831 0.98532 1.24678 0.91522 0.92681 0.93057 1.81233 1.11539 1.07346 1.08952 1.67740 1.03390 1.36409 1.14802 0.92942 0.91814 0.93816 0.92448 0.92476 0.91505 0.92117 0.91194 0.90641 0.93891 0.95345 0.92296 0.81331 0.77764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.18 71.98 0.59 -3.53 16 2 C -0.10 -2.84 3.13 -10.79 -0.03 -2.87 16 3 C -0.14 -3.02 9.19 71.98 0.66 -2.36 16 4 C 0.13 4.28 4.97 86.38 0.43 4.71 16 5 N -0.57 -21.58 2.40 -707.80 -1.70 -23.28 16 6 C 0.26 11.41 4.08 85.63 0.35 11.76 16 7 C -0.55 -27.16 9.39 25.60 0.24 -26.92 16 8 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 9 C 0.03 1.37 5.46 84.66 0.46 1.83 16 10 N -0.92 -48.43 13.29 21.45 0.28 -48.15 16 11 Si 0.95 40.86 29.54 68.60 2.03 42.89 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 13 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 14 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 15 C 0.37 13.24 7.37 133.19 0.98 14.22 16 16 C 0.02 0.88 10.43 85.01 0.89 1.77 16 17 N -0.41 -12.91 10.48 -193.55 -2.03 -14.94 16 18 C 0.02 0.64 10.91 84.92 0.93 1.57 16 19 C 0.18 5.18 6.58 40.45 0.27 5.44 16 20 C 0.30 8.06 15.56 88.33 1.37 9.43 16 21 N -0.41 -11.98 18.54 19.00 0.35 -11.63 16 22 N -0.50 -16.52 9.18 -186.03 -1.71 -18.23 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.04 1.45 5.89 -2.39 -0.01 1.43 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 31 H 0.08 2.46 7.31 -2.39 -0.02 2.44 16 32 H 0.04 1.97 5.98 -2.38 -0.01 1.96 16 33 H 0.03 1.31 5.99 -2.39 -0.01 1.30 16 34 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 35 H 0.17 6.41 6.03 -2.91 -0.02 6.39 16 36 H 0.21 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -53.73 312.30 5.46 -48.27 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.09 Total: 10.03 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 7.13 Total: 15.04 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -4.79 Total: -116.23 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -53.73 5.46 -48.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401327685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.967 kcal (2) G-P(sol) polarization free energy of solvation -53.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds