Wall clock time and date at job start Mon Mar 30 2020 04:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00267 * 2 1 4 4 H 1.09002 * 109.46931 * 325.00014 * 3 2 1 5 5 C 1.47201 * 109.46920 * 84.99927 * 3 2 1 6 6 N 3.39310 * 100.83781 * 47.30667 * 2 1 3 7 7 C 1.52998 * 109.46793 * 204.99848 * 3 2 1 8 8 C 1.53004 * 109.47132 * 65.00106 * 7 3 2 9 9 O 1.42898 * 109.47147 * 179.97438 * 8 7 3 10 10 C 1.35675 * 117.00006 * 179.97438 * 9 8 7 11 11 C 1.39308 * 119.81898 * 359.72734 * 10 9 8 12 12 C 1.36434 * 120.18927 * 179.75903 * 11 10 9 13 13 C 1.40839 * 119.80551 * 0.51070 * 12 11 10 14 14 C 1.41223 * 120.17793 * 179.71722 * 13 12 11 15 15 H 1.07993 * 120.00265 * 204.56565 * 14 13 12 16 16 C 1.39894 * 119.99450 * 24.57300 * 14 13 12 17 17 N 1.30873 * 120.00534 * 17.91707 * 16 14 13 18 18 Si 1.86801 * 119.99286 * 197.92265 * 16 14 13 19 19 H 1.48503 * 109.47182 * 90.00071 * 18 16 14 20 20 H 1.48504 * 109.46789 * 209.99702 * 18 16 14 21 21 H 1.48502 * 109.47209 * 329.99692 * 18 16 14 22 22 C 1.40827 * 119.64413 * 359.74237 * 13 12 11 23 23 C 1.36442 * 119.80979 * 0.02562 * 22 13 12 24 24 H 1.08999 * 109.47161 * 300.00491 * 1 2 3 25 25 H 1.09004 * 109.46887 * 60.00071 * 1 2 3 26 26 H 1.08994 * 109.47731 * 179.97438 * 1 2 3 27 27 H 1.00899 * 110.99113 * 123.95667 * 2 1 3 28 28 H 1.09006 * 109.46762 * 184.99622 * 7 3 2 29 29 H 1.08992 * 109.47342 * 305.00243 * 7 3 2 30 30 H 1.08997 * 109.47238 * 299.99935 * 8 7 3 31 31 H 1.09002 * 109.47265 * 59.99503 * 8 7 3 32 32 H 1.08010 * 119.90604 * 0.02562 * 11 10 9 33 33 H 1.08001 * 120.10177 * 180.25485 * 12 11 10 34 34 H 0.97003 * 119.99876 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.09589 * 179.97438 * 22 13 12 36 36 H 1.08001 * 119.90247 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0584 1.8728 1.3826 6 7 2.1070 2.2597 2.4494 7 6 3.3988 1.3789 -0.6096 8 6 3.3167 0.9768 -2.0836 9 8 4.6273 0.9843 -2.6531 10 6 4.7314 0.6479 -3.9633 11 6 3.5885 0.3107 -4.6849 12 6 3.6840 -0.0241 -6.0041 13 6 4.9439 -0.0386 -6.6333 14 6 5.0525 -0.3897 -7.9969 15 1 5.9817 -0.7842 -8.3806 16 6 3.9563 -0.2264 -8.8505 17 7 2.9664 0.5557 -8.5023 18 14 3.9054 -1.1250 -10.4874 19 1 3.2520 -2.4462 -10.3068 20 1 3.1338 -0.3214 -11.4694 21 1 5.2898 -1.3215 -10.9875 22 6 6.0950 0.2984 -5.8953 23 6 5.9815 0.6355 -4.5780 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8305 -0.5262 0.7814 28 1 3.8246 2.3791 -0.5290 29 1 4.0312 0.6705 -0.0745 30 1 2.8909 -0.0233 -2.1642 31 1 2.6842 1.6851 -2.6188 32 1 2.6235 0.3185 -4.1998 33 1 2.7965 -0.2813 -6.5632 34 1 2.2065 0.6692 -9.0945 35 1 7.0648 0.2893 -6.3703 36 1 6.8633 0.8938 -4.0105 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402404123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:46 Heat of formation + Delta-G solvation = -12.014620 kcal Electronic energy + Delta-G solvation = -18145.631415 eV Core-core repulsion = 15208.059840 eV Total energy + Delta-G solvation = -2937.571575 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46824 -39.18002 -38.00220 -36.47739 -35.18267 -33.05529 -31.44005 -30.87213 -28.19267 -26.47544 -25.15032 -23.59751 -22.65758 -21.72202 -19.52074 -19.18721 -18.39373 -17.08610 -17.03119 -16.11050 -16.01636 -15.86384 -15.66836 -15.13702 -14.64143 -14.43277 -14.10245 -14.02254 -13.87698 -13.77603 -13.52948 -13.28456 -13.02196 -12.73436 -12.63592 -12.46459 -12.31836 -12.13035 -11.99706 -11.57524 -11.32420 -11.10969 -10.77705 -9.75970 -9.47048 -8.81877 -8.53699 -6.15679 1.02113 1.13277 1.43262 1.51588 1.55554 1.56809 1.57196 2.27115 2.51142 2.79115 2.98874 3.19342 3.78563 4.00713 4.06235 4.29091 4.41400 4.45238 4.53020 4.61373 4.62703 4.69666 4.94215 5.06928 5.08622 5.12790 5.22357 5.24092 5.45239 5.62646 5.75024 5.76416 6.07556 6.14003 6.22069 6.32584 6.36338 6.64701 6.89466 7.02240 7.20446 8.42571 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033241 B = 0.003673 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.143119 B = 7620.994730 C = 8246.790020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.674 5.674 3 C 0.196 3.804 4 H 0.146 0.854 5 C 0.205 3.795 6 N -0.471 5.471 7 C -0.093 4.093 8 C 0.069 3.931 9 O -0.339 6.339 10 C 0.007 3.993 11 C -0.173 4.173 12 C -0.154 4.154 13 C 0.052 3.948 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.831 5.831 18 Si 0.979 3.021 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.261 1.261 22 C -0.207 4.207 23 C -0.125 4.125 24 H 0.026 0.974 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.356 0.644 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.286 0.714 35 H 0.106 0.894 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 -0.810 10.848 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.305 5.305 3 C 0.082 3.918 4 H 0.163 0.837 5 C -0.115 4.115 6 N -0.149 5.149 7 C -0.132 4.132 8 C -0.006 4.006 9 O -0.255 6.255 10 C -0.037 4.037 11 C -0.191 4.191 12 C -0.174 4.174 13 C 0.050 3.950 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.458 5.458 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.194 1.194 21 H -0.185 1.185 22 C -0.227 4.227 23 C -0.144 4.144 24 H 0.045 0.955 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.175 0.825 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.142 0.858 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.156 -0.165 11.813 13.322 hybrid contribution -0.417 -0.130 -0.302 0.531 sum -6.573 -0.296 11.511 13.258 Atomic orbital electron populations 1.22435 0.85610 1.03660 1.01307 1.60747 1.09816 1.09661 1.50303 1.19390 0.98752 0.91233 0.82384 0.83652 1.30800 0.91940 0.92767 0.96027 1.81228 1.09707 1.09469 1.14462 1.21321 0.94663 1.03819 0.93417 1.22556 0.82947 1.02103 0.92982 1.85744 1.31676 1.85901 1.22155 1.18641 0.93986 1.07653 0.83422 1.20854 0.97121 1.05808 0.95364 1.20929 0.98137 1.04853 0.93488 1.17949 0.91983 0.91148 0.93891 1.19703 0.99181 1.40150 0.94145 0.90920 1.26659 0.94046 0.93478 1.03670 1.69883 1.08317 1.28600 1.38985 0.85247 0.79411 0.78832 0.76445 1.18773 1.19444 1.18490 1.20779 0.98084 1.09234 0.94572 1.19898 0.95063 1.04772 0.94657 0.95524 0.90140 0.89734 0.82454 0.89498 0.89991 0.91128 0.92523 0.85824 0.87578 0.90334 0.87611 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.49 127.69 1.34 1.54 16 2 N -0.67 -9.01 6.05 -524.14 -3.17 -12.18 16 3 C 0.20 2.73 2.44 43.11 0.11 2.84 16 4 H 0.15 1.50 7.80 -2.39 -0.02 1.48 16 5 C 0.20 3.71 14.43 89.44 1.29 5.00 16 6 N -0.47 -11.39 18.54 20.00 0.37 -11.02 16 7 C -0.09 -1.71 5.22 30.60 0.16 -1.55 16 8 C 0.07 1.81 4.62 71.98 0.33 2.14 16 9 O -0.34 -12.31 10.12 -89.93 -0.91 -13.22 16 10 C 0.01 0.30 6.71 22.78 0.15 0.46 16 11 C -0.17 -7.74 8.96 22.11 0.20 -7.54 16 12 C -0.15 -7.99 8.64 22.48 0.19 -7.80 16 13 C 0.05 2.83 5.57 -21.28 -0.12 2.71 16 14 C -0.50 -27.11 9.04 23.40 0.21 -26.90 16 15 H 0.07 3.81 7.91 -2.91 -0.02 3.78 16 16 C 0.04 1.77 5.13 85.24 0.44 2.21 16 17 N -0.83 -43.09 10.96 21.82 0.24 -42.85 16 18 Si 0.98 38.16 29.59 68.60 2.03 40.19 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 C -0.21 -10.21 9.74 22.48 0.22 -9.99 16 23 C -0.13 -5.64 9.92 22.11 0.22 -5.42 16 24 H 0.03 0.28 7.98 -2.39 -0.02 0.26 16 25 H 0.08 0.81 8.06 -2.38 -0.02 0.79 16 26 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.36 4.27 8.54 -89.69 -0.77 3.50 16 28 H 0.09 1.55 8.14 -2.38 -0.02 1.54 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.86 7.24 -2.39 -0.02 1.85 16 31 H 0.06 1.43 7.66 -2.39 -0.02 1.41 16 32 H 0.12 4.73 6.27 -2.91 -0.02 4.71 16 33 H 0.11 5.71 6.16 -2.91 -0.02 5.69 16 34 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 35 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 36 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -63.32 313.96 3.63 -59.69 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.33 Total: 21.70 kcal Atomic # 6 Polarization: -47.05 SS G_CDS: 4.74 Total: -42.31 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -2.56 Total: -66.05 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.91 Total: -13.22 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -63.32 3.63 -59.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402404123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.677 kcal (2) G-P(sol) polarization free energy of solvation -63.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds