Wall clock time and date at job start Mon Mar 30 2020 04:57:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46908 * 110.99760 * 2 1
4 4 H 1.09001 * 109.46728 * 34.99475 * 3 2 1
5 5 C 1.47200 * 109.46982 * 274.99766 * 3 2 1
6 6 N 3.39326 * 100.83456 * 312.69282 * 2 1 3
7 7 C 1.52998 * 109.47168 * 154.99816 * 3 2 1
8 8 C 1.53003 * 109.47051 * 294.99603 * 7 3 2
9 9 O 1.42899 * 109.46838 * 180.02562 * 8 7 3
10 10 C 1.35680 * 116.99673 * 180.02562 * 9 8 7
11 11 C 1.39316 * 119.81566 * 359.72213 * 10 9 8
12 12 C 1.36441 * 120.18089 * 179.76418 * 11 10 9
13 13 C 1.40831 * 119.80822 * 0.51381 * 12 11 10
14 14 C 1.41217 * 120.17484 * 179.72038 * 13 12 11
15 15 H 1.08005 * 119.99768 * 204.56247 * 14 13 12
16 16 C 1.39895 * 120.00323 * 24.56928 * 14 13 12
17 17 N 1.30879 * 119.99796 * 17.91830 * 16 14 13
18 18 Si 1.86791 * 120.00072 * 197.92453 * 16 14 13
19 19 H 1.48502 * 109.47497 * 89.99849 * 18 16 14
20 20 H 1.48506 * 109.47201 * 209.99403 * 18 16 14
21 21 H 1.48495 * 109.47405 * 329.99448 * 18 16 14
22 22 C 1.40833 * 119.64714 * 359.73986 * 13 12 11
23 23 C 1.36438 * 119.80966 * 0.02562 * 22 13 12
24 24 H 1.09000 * 109.46930 * 60.00565 * 1 2 3
25 25 H 1.09008 * 109.46570 * 179.97438 * 1 2 3
26 26 H 1.08994 * 109.47638 * 300.00177 * 1 2 3
27 27 H 1.00896 * 111.00665 * 236.04751 * 2 1 3
28 28 H 1.09000 * 109.46625 * 174.99952 * 7 3 2
29 29 H 1.09000 * 109.47035 * 54.99750 * 7 3 2
30 30 H 1.08995 * 109.47195 * 300.00686 * 8 7 3
31 31 H 1.09002 * 109.46811 * 59.99942 * 8 7 3
32 32 H 1.07995 * 119.90927 * 0.02562 * 11 10 9
33 33 H 1.08001 * 120.09579 * 180.25618 * 12 11 10
34 34 H 0.97003 * 120.00005 * 180.02562 * 17 16 14
35 35 H 1.07993 * 120.09466 * 179.97438 * 22 13 12
36 36 H 1.08001 * 119.90523 * 179.97438 * 23 22 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 1 1.3396 2.0123 0.5894
5 6 2.0584 1.8729 -1.3825
6 7 2.1068 2.2598 -2.4496
7 6 3.3987 1.3792 0.6097
8 6 3.3165 0.9773 2.0837
9 8 4.6271 0.9851 2.6532
10 6 4.7312 0.6487 3.9635
11 6 3.5868 0.3226 4.6880
12 6 3.6835 -0.0214 6.0048
13 6 4.9433 -0.0357 6.6340
14 6 5.0516 -0.3848 7.9980
15 1 5.8902 -0.0327 8.5806
16 6 4.0729 -1.1867 8.5947
17 7 3.2644 -1.8963 7.8491
18 14 3.9198 -1.2448 10.4554
19 1 2.9775 -0.1899 10.9078
20 1 3.4078 -2.5761 10.8687
21 1 5.2522 -1.0145 11.0692
22 6 6.0946 0.3005 5.8957
23 6 5.9812 0.6375 4.5785
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0278 -0.0005
26 1 -0.3634 0.5138 0.8899
27 1 1.8307 -0.5261 -0.7813
28 1 3.8243 2.3794 0.5290
29 1 4.0312 0.6709 0.0746
30 1 2.6839 1.6855 2.6187
31 1 2.8908 -0.0229 2.1643
32 1 2.6211 0.3380 4.2050
33 1 2.7959 -0.2780 6.5641
34 1 2.5855 -2.4521 8.2628
35 1 7.0642 0.2923 6.3711
36 1 6.8630 0.8960 4.0110
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000402404124.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:57:48
Heat of formation + Delta-G solvation = 5.831089 kcal
Electronic energy + Delta-G solvation = -18149.989615 eV
Core-core repulsion = 15213.191888 eV
Total energy + Delta-G solvation = -2936.797727 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-38.98159 -38.17655 -36.37854 -35.61246 -33.38841 -32.09104 -29.59695 -29.11395
-27.14293 -24.78678 -24.36443 -22.33430 -20.89018 -20.19377 -18.65031 -17.31381
-16.86858 -16.17462 -15.29529 -15.20682 -14.87806 -14.47122 -14.30189 -13.90549
-13.45615 -13.14266 -12.97993 -12.89088 -12.60554 -12.34158 -12.11758 -11.90108
-11.81612 -11.53854 -11.16942 -11.09519 -10.91019 -10.84694 -10.49064 -9.81673
-9.74101 -9.32099 -9.11600 -8.97208 -7.60539 -6.96918 -6.69369 -4.21620
2.32416 2.38416 2.80400 3.00945 3.10305 3.13707 3.24756 3.43977
3.78943 3.97562 4.21450 4.65167 4.71075 4.92750 5.05097 5.15655
5.28593 5.50916 5.61320 5.69904 5.71382 6.03602 6.15409 6.20302
6.33074 6.40643 6.78377 6.81020 6.94117 7.10642 7.15423 7.32252
7.46168 7.60253 7.95948 8.04245 8.19917 8.49576 8.69897 8.93892
9.03747 10.25191
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.033188 B = 0.003702 C = 0.003388
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 843.463555 B = 7562.480592 C = 8262.619117
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.667 5.667
3 C 0.186 3.814
4 H 0.124 0.876
5 C 0.177 3.823
6 N -0.425 5.425
7 C -0.102 4.102
8 C 0.076 3.924
9 O -0.333 6.333
10 C -0.005 4.005
11 C -0.172 4.172
12 C -0.134 4.134
13 C 0.086 3.914
14 C -0.464 4.464
15 H 0.076 0.924
16 C 0.075 3.925
17 N -0.800 5.800
18 Si 0.906 3.094
19 H -0.269 1.269
20 H -0.279 1.279
21 H -0.263 1.263
22 C -0.197 4.197
23 C -0.115 4.115
24 H 0.024 0.976
25 H 0.077 0.923
26 H 0.076 0.924
27 H 0.352 0.648
28 H 0.081 0.919
29 H 0.081 0.919
30 H 0.049 0.951
31 H 0.070 0.930
32 H 0.097 0.903
33 H 0.121 0.879
34 H 0.279 0.721
35 H 0.099 0.901
36 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.914 2.733 -9.521 11.537
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 N -0.297 5.297
3 C 0.072 3.928
4 H 0.142 0.858
5 C -0.143 4.143
6 N -0.102 5.102
7 C -0.142 4.142
8 C 0.000 4.000
9 O -0.249 6.249
10 C -0.048 4.048
11 C -0.191 4.191
12 C -0.154 4.154
13 C 0.084 3.916
14 C -0.494 4.494
15 H 0.094 0.906
16 C -0.142 4.142
17 N -0.426 5.426
18 Si 0.731 3.269
19 H -0.194 1.194
20 H -0.205 1.205
21 H -0.187 1.187
22 C -0.216 4.216
23 C -0.134 4.134
24 H 0.042 0.958
25 H 0.096 0.904
26 H 0.094 0.906
27 H 0.171 0.829
28 H 0.100 0.900
29 H 0.100 0.900
30 H 0.067 0.933
31 H 0.088 0.912
32 H 0.115 0.885
33 H 0.138 0.862
34 H 0.089 0.911
35 H 0.117 0.883
36 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -5.847 3.091 -10.534 12.438
hybrid contribution -0.634 -0.103 0.359 0.736
sum -6.481 2.988 -10.175 12.428
Atomic orbital electron populations
1.22390 0.86584 1.03062 1.00962 1.60714 1.08853 1.10136 1.50044
1.19391 0.99556 0.90496 0.83326 0.85809 1.30610 0.93370 0.94126
0.96220 1.81197 1.08230 1.07820 1.12975 1.21417 0.93209 1.03555
0.95982 1.22253 0.85007 1.01683 0.91055 1.85740 1.28639 1.86446
1.24089 1.18534 0.94520 1.09603 0.82142 1.20634 0.95578 1.06511
0.96391 1.20947 0.98393 1.02641 0.93377 1.17595 0.90634 0.90168
0.93188 1.19473 1.07422 1.27541 0.94998 0.90564 1.25859 0.94483
0.93397 1.00414 1.69843 1.15850 1.19415 1.37514 0.86344 0.79603
0.78116 0.82809 1.19408 1.20454 1.18722 1.20587 0.97513 1.10453
0.93094 1.19612 0.93709 1.05124 0.94948 0.95782 0.90396 0.90568
0.82935 0.90043 0.90044 0.93322 0.91167 0.88503 0.86163 0.91051
0.88332 0.88620
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.13 10.49 60.06 0.63 0.76 16
2 N -0.67 -5.44 6.05 -117.01 -0.71 -6.15 16
3 C 0.19 1.56 2.44 -70.50 -0.17 1.38 16
4 H 0.12 0.84 7.80 -51.93 -0.40 0.43 16
5 C 0.18 1.79 14.43 -20.76 -0.30 1.49 16
6 N -0.43 -5.41 18.54 42.16 0.78 -4.63 16
7 C -0.10 -1.08 5.22 -26.73 -0.14 -1.22 16
8 C 0.08 1.10 4.62 37.16 0.17 1.27 16
9 O -0.33 -6.43 10.12 -18.74 -0.19 -6.62 16
10 C 0.00 -0.11 6.71 -38.78 -0.26 -0.37 16
11 C -0.17 -3.93 8.96 -39.83 -0.36 -4.29 16
12 C -0.13 -3.42 8.64 -39.25 -0.34 -3.76 16
13 C 0.09 2.28 5.57 -106.80 -0.60 1.69 16
14 C -0.46 -12.23 9.04 -37.83 -0.34 -12.58 16
15 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16
16 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16
17 N -0.80 -20.50 10.96 55.55 0.61 -19.89 16
18 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16
19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16
20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16
21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16
22 C -0.20 -4.81 9.74 -39.25 -0.38 -5.19 16
23 C -0.12 -2.64 9.92 -39.83 -0.40 -3.04 16
24 H 0.02 0.16 7.98 -51.93 -0.41 -0.26 16
25 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16
26 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16
27 H 0.35 2.59 8.54 -39.29 -0.34 2.26 16
28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16
30 H 0.05 0.67 7.64 -51.93 -0.40 0.27 16
31 H 0.07 1.05 7.27 -51.93 -0.38 0.67 16
32 H 0.10 1.94 6.27 -52.49 -0.33 1.61 16
33 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16
34 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16
35 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16
36 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16
LS Contribution 313.96 15.07 4.73 4.73
Total: -1.00 -29.37 313.96 -7.04 -36.41
By element:
Atomic # 1 Polarization: 9.35 SS G_CDS: -4.66 Total: 4.69 kcal
Atomic # 6 Polarization: -19.50 SS G_CDS: -2.57 Total: -22.08 kcal
Atomic # 7 Polarization: -31.35 SS G_CDS: 0.68 Total: -30.67 kcal
Atomic # 8 Polarization: -6.43 SS G_CDS: -0.19 Total: -6.62 kcal
Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -29.37 -7.04 -36.41 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000402404124.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.241 kcal
(2) G-P(sol) polarization free energy of solvation -29.372 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.870 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.831 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds