Wall clock time and date at job start Mon Mar 30 2020 04:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46908 * 110.99760 * 2 1 4 4 H 1.09001 * 109.46728 * 34.99475 * 3 2 1 5 5 C 1.47200 * 109.46982 * 274.99766 * 3 2 1 6 6 N 3.39326 * 100.83456 * 312.69282 * 2 1 3 7 7 C 1.52998 * 109.47168 * 154.99816 * 3 2 1 8 8 C 1.53003 * 109.47051 * 294.99603 * 7 3 2 9 9 O 1.42899 * 109.46838 * 180.02562 * 8 7 3 10 10 C 1.35680 * 116.99673 * 180.02562 * 9 8 7 11 11 C 1.39316 * 119.81566 * 359.72213 * 10 9 8 12 12 C 1.36441 * 120.18089 * 179.76418 * 11 10 9 13 13 C 1.40831 * 119.80822 * 0.51381 * 12 11 10 14 14 C 1.41217 * 120.17484 * 179.72038 * 13 12 11 15 15 H 1.08005 * 119.99768 * 204.56247 * 14 13 12 16 16 C 1.39895 * 120.00323 * 24.56928 * 14 13 12 17 17 N 1.30879 * 119.99796 * 17.91830 * 16 14 13 18 18 Si 1.86791 * 120.00072 * 197.92453 * 16 14 13 19 19 H 1.48502 * 109.47497 * 89.99849 * 18 16 14 20 20 H 1.48506 * 109.47201 * 209.99403 * 18 16 14 21 21 H 1.48495 * 109.47405 * 329.99448 * 18 16 14 22 22 C 1.40833 * 119.64714 * 359.73986 * 13 12 11 23 23 C 1.36438 * 119.80966 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.46930 * 60.00565 * 1 2 3 25 25 H 1.09008 * 109.46570 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47638 * 300.00177 * 1 2 3 27 27 H 1.00896 * 111.00665 * 236.04751 * 2 1 3 28 28 H 1.09000 * 109.46625 * 174.99952 * 7 3 2 29 29 H 1.09000 * 109.47035 * 54.99750 * 7 3 2 30 30 H 1.08995 * 109.47195 * 300.00686 * 8 7 3 31 31 H 1.09002 * 109.46811 * 59.99942 * 8 7 3 32 32 H 1.07995 * 119.90927 * 0.02562 * 11 10 9 33 33 H 1.08001 * 120.09579 * 180.25618 * 12 11 10 34 34 H 0.97003 * 120.00005 * 180.02562 * 17 16 14 35 35 H 1.07993 * 120.09466 * 179.97438 * 22 13 12 36 36 H 1.08001 * 119.90523 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3396 2.0123 0.5894 5 6 2.0584 1.8729 -1.3825 6 7 2.1068 2.2598 -2.4496 7 6 3.3987 1.3792 0.6097 8 6 3.3165 0.9773 2.0837 9 8 4.6271 0.9851 2.6532 10 6 4.7312 0.6487 3.9635 11 6 3.5868 0.3226 4.6880 12 6 3.6835 -0.0214 6.0048 13 6 4.9433 -0.0357 6.6340 14 6 5.0516 -0.3848 7.9980 15 1 5.8902 -0.0327 8.5806 16 6 4.0729 -1.1867 8.5947 17 7 3.2644 -1.8963 7.8491 18 14 3.9198 -1.2448 10.4554 19 1 2.9775 -0.1899 10.9078 20 1 3.4078 -2.5761 10.8687 21 1 5.2522 -1.0145 11.0692 22 6 6.0946 0.3005 5.8957 23 6 5.9812 0.6375 4.5785 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8307 -0.5261 -0.7813 28 1 3.8243 2.3794 0.5290 29 1 4.0312 0.6709 0.0746 30 1 2.6839 1.6855 2.6187 31 1 2.8908 -0.0229 2.1643 32 1 2.6211 0.3380 4.2050 33 1 2.7959 -0.2780 6.5641 34 1 2.5855 -2.4521 8.2628 35 1 7.0642 0.2923 6.3711 36 1 6.8630 0.8960 4.0110 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402404124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:48 Heat of formation + Delta-G solvation = 5.831089 kcal Electronic energy + Delta-G solvation = -18149.989615 eV Core-core repulsion = 15213.191888 eV Total energy + Delta-G solvation = -2936.797727 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.98159 -38.17655 -36.37854 -35.61246 -33.38841 -32.09104 -29.59695 -29.11395 -27.14293 -24.78678 -24.36443 -22.33430 -20.89018 -20.19377 -18.65031 -17.31381 -16.86858 -16.17462 -15.29529 -15.20682 -14.87806 -14.47122 -14.30189 -13.90549 -13.45615 -13.14266 -12.97993 -12.89088 -12.60554 -12.34158 -12.11758 -11.90108 -11.81612 -11.53854 -11.16942 -11.09519 -10.91019 -10.84694 -10.49064 -9.81673 -9.74101 -9.32099 -9.11600 -8.97208 -7.60539 -6.96918 -6.69369 -4.21620 2.32416 2.38416 2.80400 3.00945 3.10305 3.13707 3.24756 3.43977 3.78943 3.97562 4.21450 4.65167 4.71075 4.92750 5.05097 5.15655 5.28593 5.50916 5.61320 5.69904 5.71382 6.03602 6.15409 6.20302 6.33074 6.40643 6.78377 6.81020 6.94117 7.10642 7.15423 7.32252 7.46168 7.60253 7.95948 8.04245 8.19917 8.49576 8.69897 8.93892 9.03747 10.25191 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033188 B = 0.003702 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.463555 B = 7562.480592 C = 8262.619117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.667 5.667 3 C 0.186 3.814 4 H 0.124 0.876 5 C 0.177 3.823 6 N -0.425 5.425 7 C -0.102 4.102 8 C 0.076 3.924 9 O -0.333 6.333 10 C -0.005 4.005 11 C -0.172 4.172 12 C -0.134 4.134 13 C 0.086 3.914 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.800 5.800 18 Si 0.906 3.094 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.197 4.197 23 C -0.115 4.115 24 H 0.024 0.976 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.352 0.648 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.279 0.721 35 H 0.099 0.901 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.914 2.733 -9.521 11.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.297 5.297 3 C 0.072 3.928 4 H 0.142 0.858 5 C -0.143 4.143 6 N -0.102 5.102 7 C -0.142 4.142 8 C 0.000 4.000 9 O -0.249 6.249 10 C -0.048 4.048 11 C -0.191 4.191 12 C -0.154 4.154 13 C 0.084 3.916 14 C -0.494 4.494 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.426 5.426 18 Si 0.731 3.269 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.187 1.187 22 C -0.216 4.216 23 C -0.134 4.134 24 H 0.042 0.958 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.171 0.829 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.847 3.091 -10.534 12.438 hybrid contribution -0.634 -0.103 0.359 0.736 sum -6.481 2.988 -10.175 12.428 Atomic orbital electron populations 1.22390 0.86584 1.03062 1.00962 1.60714 1.08853 1.10136 1.50044 1.19391 0.99556 0.90496 0.83326 0.85809 1.30610 0.93370 0.94126 0.96220 1.81197 1.08230 1.07820 1.12975 1.21417 0.93209 1.03555 0.95982 1.22253 0.85007 1.01683 0.91055 1.85740 1.28639 1.86446 1.24089 1.18534 0.94520 1.09603 0.82142 1.20634 0.95578 1.06511 0.96391 1.20947 0.98393 1.02641 0.93377 1.17595 0.90634 0.90168 0.93188 1.19473 1.07422 1.27541 0.94998 0.90564 1.25859 0.94483 0.93397 1.00414 1.69843 1.15850 1.19415 1.37514 0.86344 0.79603 0.78116 0.82809 1.19408 1.20454 1.18722 1.20587 0.97513 1.10453 0.93094 1.19612 0.93709 1.05124 0.94948 0.95782 0.90396 0.90568 0.82935 0.90043 0.90044 0.93322 0.91167 0.88503 0.86163 0.91051 0.88332 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.49 60.06 0.63 0.76 16 2 N -0.67 -5.44 6.05 -117.01 -0.71 -6.15 16 3 C 0.19 1.56 2.44 -70.50 -0.17 1.38 16 4 H 0.12 0.84 7.80 -51.93 -0.40 0.43 16 5 C 0.18 1.79 14.43 -20.76 -0.30 1.49 16 6 N -0.43 -5.41 18.54 42.16 0.78 -4.63 16 7 C -0.10 -1.08 5.22 -26.73 -0.14 -1.22 16 8 C 0.08 1.10 4.62 37.16 0.17 1.27 16 9 O -0.33 -6.43 10.12 -18.74 -0.19 -6.62 16 10 C 0.00 -0.11 6.71 -38.78 -0.26 -0.37 16 11 C -0.17 -3.93 8.96 -39.83 -0.36 -4.29 16 12 C -0.13 -3.42 8.64 -39.25 -0.34 -3.76 16 13 C 0.09 2.28 5.57 -106.80 -0.60 1.69 16 14 C -0.46 -12.23 9.04 -37.83 -0.34 -12.58 16 15 H 0.08 1.94 7.91 -52.48 -0.41 1.52 16 16 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 17 N -0.80 -20.50 10.96 55.55 0.61 -19.89 16 18 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.20 -4.81 9.74 -39.25 -0.38 -5.19 16 23 C -0.12 -2.64 9.92 -39.83 -0.40 -3.04 16 24 H 0.02 0.16 7.98 -51.93 -0.41 -0.26 16 25 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 27 H 0.35 2.59 8.54 -39.29 -0.34 2.26 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.67 7.64 -51.93 -0.40 0.27 16 31 H 0.07 1.05 7.27 -51.93 -0.38 0.67 16 32 H 0.10 1.94 6.27 -52.49 -0.33 1.61 16 33 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 34 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 35 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 313.96 15.07 4.73 4.73 Total: -1.00 -29.37 313.96 -7.04 -36.41 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.66 Total: 4.69 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -2.57 Total: -22.08 kcal Atomic # 7 Polarization: -31.35 SS G_CDS: 0.68 Total: -30.67 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.19 Total: -6.62 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.37 -7.04 -36.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402404124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.241 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds