Wall clock time and date at job start Mon Mar 30 2020 04:57:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46908 * 110.99760 * 2 1
4 4 H 1.09001 * 109.46728 * 34.99475 * 3 2 1
5 5 C 1.47200 * 109.46982 * 274.99766 * 3 2 1
6 6 N 3.39326 * 100.83456 * 312.69282 * 2 1 3
7 7 C 1.52998 * 109.47168 * 154.99816 * 3 2 1
8 8 C 1.53003 * 109.47051 * 294.99603 * 7 3 2
9 9 O 1.42899 * 109.46838 * 180.02562 * 8 7 3
10 10 C 1.35680 * 116.99673 * 180.02562 * 9 8 7
11 11 C 1.39316 * 119.81566 * 359.72213 * 10 9 8
12 12 C 1.36441 * 120.18089 * 179.76418 * 11 10 9
13 13 C 1.40831 * 119.80822 * 0.51381 * 12 11 10
14 14 C 1.41217 * 120.17484 * 179.72038 * 13 12 11
15 15 H 1.08005 * 119.99768 * 204.56247 * 14 13 12
16 16 C 1.39895 * 120.00323 * 24.56928 * 14 13 12
17 17 N 1.30879 * 119.99796 * 17.91830 * 16 14 13
18 18 Si 1.86791 * 120.00072 * 197.92453 * 16 14 13
19 19 H 1.48502 * 109.47497 * 89.99849 * 18 16 14
20 20 H 1.48506 * 109.47201 * 209.99403 * 18 16 14
21 21 H 1.48495 * 109.47405 * 329.99448 * 18 16 14
22 22 C 1.40833 * 119.64714 * 359.73986 * 13 12 11
23 23 C 1.36438 * 119.80966 * 0.02562 * 22 13 12
24 24 H 1.09000 * 109.46930 * 60.00565 * 1 2 3
25 25 H 1.09008 * 109.46570 * 179.97438 * 1 2 3
26 26 H 1.08994 * 109.47638 * 300.00177 * 1 2 3
27 27 H 1.00896 * 111.00665 * 236.04751 * 2 1 3
28 28 H 1.09000 * 109.46625 * 174.99952 * 7 3 2
29 29 H 1.09000 * 109.47035 * 54.99750 * 7 3 2
30 30 H 1.08995 * 109.47195 * 300.00686 * 8 7 3
31 31 H 1.09002 * 109.46811 * 59.99942 * 8 7 3
32 32 H 1.07995 * 119.90927 * 0.02562 * 11 10 9
33 33 H 1.08001 * 120.09579 * 180.25618 * 12 11 10
34 34 H 0.97003 * 120.00005 * 180.02562 * 17 16 14
35 35 H 1.07993 * 120.09466 * 179.97438 * 22 13 12
36 36 H 1.08001 * 119.90523 * 179.97438 * 23 22 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 1 1.3396 2.0123 0.5894
5 6 2.0584 1.8729 -1.3825
6 7 2.1068 2.2598 -2.4496
7 6 3.3987 1.3792 0.6097
8 6 3.3165 0.9773 2.0837
9 8 4.6271 0.9851 2.6532
10 6 4.7312 0.6487 3.9635
11 6 3.5868 0.3226 4.6880
12 6 3.6835 -0.0214 6.0048
13 6 4.9433 -0.0357 6.6340
14 6 5.0516 -0.3848 7.9980
15 1 5.8902 -0.0327 8.5806
16 6 4.0729 -1.1867 8.5947
17 7 3.2644 -1.8963 7.8491
18 14 3.9198 -1.2448 10.4554
19 1 2.9775 -0.1899 10.9078
20 1 3.4078 -2.5761 10.8687
21 1 5.2522 -1.0145 11.0692
22 6 6.0946 0.3005 5.8957
23 6 5.9812 0.6375 4.5785
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0278 -0.0005
26 1 -0.3634 0.5138 0.8899
27 1 1.8307 -0.5261 -0.7813
28 1 3.8243 2.3794 0.5290
29 1 4.0312 0.6709 0.0746
30 1 2.6839 1.6855 2.6187
31 1 2.8908 -0.0229 2.1643
32 1 2.6211 0.3380 4.2050
33 1 2.7959 -0.2780 6.5641
34 1 2.5855 -2.4521 8.2628
35 1 7.0642 0.2923 6.3711
36 1 6.8630 0.8960 4.0110
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000402404124.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:57:48
Heat of formation + Delta-G solvation = -12.001143 kcal
Electronic energy + Delta-G solvation = -18150.762879 eV
Core-core repulsion = 15213.191888 eV
Total energy + Delta-G solvation = -2937.570991 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.42 seconds
Orbital eigenvalues (eV)
-40.46648 -39.17774 -38.00067 -36.47432 -35.18138 -33.05516 -31.43966 -30.87139
-28.19127 -26.47431 -25.15122 -23.59656 -22.65659 -21.72122 -19.51915 -19.18649
-18.39254 -17.09664 -17.01635 -16.11969 -16.00067 -15.87286 -15.66689 -15.13410
-14.63916 -14.42726 -14.14739 -13.99242 -13.87567 -13.69240 -13.59258 -13.34341
-12.94346 -12.73538 -12.66140 -12.44491 -12.30742 -12.17942 -11.97818 -11.57485
-11.31621 -11.10619 -10.78021 -9.75669 -9.46998 -8.81787 -8.53499 -6.15603
1.02158 1.13303 1.43309 1.51670 1.55640 1.56898 1.57193 2.27183
2.51306 2.79110 2.98967 3.19622 3.78583 4.00696 4.06387 4.29192
4.41585 4.45369 4.52782 4.61232 4.62598 4.69665 4.94299 5.07101
5.08899 5.12574 5.22437 5.24230 5.45298 5.62692 5.75109 5.77023
6.07609 6.14025 6.21538 6.32651 6.36507 6.64755 6.89562 7.02298
7.20524 8.42743
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.033188 B = 0.003702 C = 0.003388
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 843.463555 B = 7562.480592 C = 8262.619117
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.676 5.676
3 C 0.196 3.804
4 H 0.148 0.852
5 C 0.205 3.795
6 N -0.471 5.471
7 C -0.093 4.093
8 C 0.069 3.931
9 O -0.339 6.339
10 C 0.007 3.993
11 C -0.173 4.173
12 C -0.155 4.155
13 C 0.052 3.948
14 C -0.502 4.502
15 H 0.073 0.927
16 C 0.035 3.965
17 N -0.831 5.831
18 Si 0.980 3.020
19 H -0.263 1.263
20 H -0.270 1.270
21 H -0.261 1.261
22 C -0.207 4.207
23 C -0.125 4.125
24 H 0.027 0.973
25 H 0.083 0.917
26 H 0.081 0.919
27 H 0.356 0.644
28 H 0.088 0.912
29 H 0.079 0.921
30 H 0.060 0.940
31 H 0.067 0.933
32 H 0.124 0.876
33 H 0.106 0.894
34 H 0.286 0.714
35 H 0.106 0.894
36 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.658 3.024 -9.820 12.244
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 N -0.307 5.307
3 C 0.083 3.917
4 H 0.165 0.835
5 C -0.115 4.115
6 N -0.149 5.149
7 C -0.132 4.132
8 C -0.006 4.006
9 O -0.255 6.255
10 C -0.037 4.037
11 C -0.191 4.191
12 C -0.174 4.174
13 C 0.050 3.950
14 C -0.532 4.532
15 H 0.091 0.909
16 C -0.179 4.179
17 N -0.458 5.458
18 Si 0.801 3.199
19 H -0.188 1.188
20 H -0.195 1.195
21 H -0.185 1.185
22 C -0.227 4.227
23 C -0.144 4.144
24 H 0.045 0.955
25 H 0.101 0.899
26 H 0.100 0.900
27 H 0.175 0.825
28 H 0.107 0.893
29 H 0.098 0.902
30 H 0.078 0.922
31 H 0.085 0.915
32 H 0.142 0.858
33 H 0.124 0.876
34 H 0.097 0.903
35 H 0.124 0.876
36 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -6.595 3.384 -10.861 13.150
hybrid contribution -0.407 -0.186 0.287 0.532
sum -7.003 3.198 -10.574 13.079
Atomic orbital electron populations
1.22434 0.85590 1.03616 1.01343 1.60746 1.09846 1.09747 1.50322
1.19397 0.98758 0.91175 0.82403 0.83495 1.30810 0.91932 0.92755
0.96034 1.81235 1.09716 1.09500 1.14432 1.21324 0.94660 1.03840
0.93407 1.22555 0.82974 1.02040 0.93032 1.85745 1.31706 1.85818
1.22211 1.18645 0.94091 1.07555 0.83420 1.20856 0.97173 1.05597
0.95516 1.20928 0.97705 1.04196 0.94586 1.17947 0.91656 0.91429
0.93936 1.19703 1.08639 1.29210 0.95630 0.90922 1.26664 0.93672
0.92407 1.05132 1.69889 1.16437 1.19899 1.39538 0.85242 0.79576
0.78467 0.76626 1.18764 1.19452 1.18494 1.20777 0.97449 1.10530
0.93915 1.19898 0.95079 1.04757 0.94657 0.95477 0.89870 0.90048
0.82502 0.89317 0.90185 0.92158 0.91469 0.85820 0.87579 0.90329
0.87617 0.86367
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.21 10.49 127.69 1.34 1.55 16
2 N -0.68 -9.34 6.05 -524.12 -3.17 -12.50 16
3 C 0.20 2.73 2.44 43.11 0.11 2.83 16
4 H 0.15 1.45 7.80 -2.39 -0.02 1.43 16
5 C 0.20 3.70 14.43 89.44 1.29 4.99 16
6 N -0.47 -11.37 18.54 20.01 0.37 -11.00 16
7 C -0.09 -1.71 5.22 30.59 0.16 -1.55 16
8 C 0.07 1.81 4.62 71.98 0.33 2.14 16
9 O -0.34 -12.31 10.12 -89.98 -0.91 -13.22 16
10 C 0.01 0.30 6.71 22.79 0.15 0.45 16
11 C -0.17 -7.73 8.96 22.11 0.20 -7.54 16
12 C -0.15 -8.00 8.64 22.48 0.19 -7.80 16
13 C 0.05 2.83 5.57 -21.28 -0.12 2.71 16
14 C -0.50 -27.11 9.04 23.40 0.21 -26.90 16
15 H 0.07 3.80 7.91 -2.91 -0.02 3.78 16
16 C 0.03 1.76 5.13 85.24 0.44 2.20 16
17 N -0.83 -43.16 10.96 21.82 0.24 -42.92 16
18 Si 0.98 38.16 29.59 68.60 2.03 40.19 16
19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16
20 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16
21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16
22 C -0.21 -10.21 9.74 22.48 0.22 -9.99 16
23 C -0.13 -5.64 9.92 22.11 0.22 -5.42 16
24 H 0.03 0.29 7.98 -2.39 -0.02 0.27 16
25 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16
26 H 0.08 0.83 8.05 -2.39 -0.02 0.81 16
27 H 0.36 4.49 8.54 -89.70 -0.77 3.72 16
28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
30 H 0.06 1.46 7.64 -2.39 -0.02 1.44 16
31 H 0.07 1.83 7.27 -2.39 -0.02 1.81 16
32 H 0.12 4.73 6.27 -2.91 -0.02 4.71 16
33 H 0.11 5.70 6.16 -2.91 -0.02 5.69 16
34 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16
35 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16
36 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16
Total: -1.00 -63.46 313.96 3.63 -59.83
By element:
Atomic # 1 Polarization: 21.63 SS G_CDS: 0.33 Total: 21.96 kcal
Atomic # 6 Polarization: -47.07 SS G_CDS: 4.74 Total: -42.33 kcal
Atomic # 7 Polarization: -63.87 SS G_CDS: -2.56 Total: -66.42 kcal
Atomic # 8 Polarization: -12.31 SS G_CDS: -0.91 Total: -13.22 kcal
Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal
Total: -63.46 3.63 -59.83 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000402404124.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.831 kcal
(2) G-P(sol) polarization free energy of solvation -63.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.633 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.832 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.42 seconds