Wall clock time and date at job start Mon Mar 30 2020 04:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46908 * 110.99760 * 2 1 4 4 H 1.09001 * 109.46728 * 34.99475 * 3 2 1 5 5 C 1.47200 * 109.46982 * 274.99766 * 3 2 1 6 6 N 3.39326 * 100.83456 * 312.69282 * 2 1 3 7 7 C 1.52998 * 109.47168 * 154.99816 * 3 2 1 8 8 C 1.53003 * 109.47051 * 294.99603 * 7 3 2 9 9 O 1.42899 * 109.46838 * 180.02562 * 8 7 3 10 10 C 1.35680 * 116.99673 * 180.02562 * 9 8 7 11 11 C 1.39316 * 119.81566 * 359.72213 * 10 9 8 12 12 C 1.36441 * 120.18089 * 179.76418 * 11 10 9 13 13 C 1.40831 * 119.80822 * 0.51381 * 12 11 10 14 14 C 1.41217 * 120.17484 * 179.72038 * 13 12 11 15 15 H 1.08005 * 119.99768 * 204.56247 * 14 13 12 16 16 C 1.39895 * 120.00323 * 24.56928 * 14 13 12 17 17 N 1.30879 * 119.99796 * 17.91830 * 16 14 13 18 18 Si 1.86791 * 120.00072 * 197.92453 * 16 14 13 19 19 H 1.48502 * 109.47497 * 89.99849 * 18 16 14 20 20 H 1.48506 * 109.47201 * 209.99403 * 18 16 14 21 21 H 1.48495 * 109.47405 * 329.99448 * 18 16 14 22 22 C 1.40833 * 119.64714 * 359.73986 * 13 12 11 23 23 C 1.36438 * 119.80966 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.46930 * 60.00565 * 1 2 3 25 25 H 1.09008 * 109.46570 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47638 * 300.00177 * 1 2 3 27 27 H 1.00896 * 111.00665 * 236.04751 * 2 1 3 28 28 H 1.09000 * 109.46625 * 174.99952 * 7 3 2 29 29 H 1.09000 * 109.47035 * 54.99750 * 7 3 2 30 30 H 1.08995 * 109.47195 * 300.00686 * 8 7 3 31 31 H 1.09002 * 109.46811 * 59.99942 * 8 7 3 32 32 H 1.07995 * 119.90927 * 0.02562 * 11 10 9 33 33 H 1.08001 * 120.09579 * 180.25618 * 12 11 10 34 34 H 0.97003 * 120.00005 * 180.02562 * 17 16 14 35 35 H 1.07993 * 120.09466 * 179.97438 * 22 13 12 36 36 H 1.08001 * 119.90523 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3396 2.0123 0.5894 5 6 2.0584 1.8729 -1.3825 6 7 2.1068 2.2598 -2.4496 7 6 3.3987 1.3792 0.6097 8 6 3.3165 0.9773 2.0837 9 8 4.6271 0.9851 2.6532 10 6 4.7312 0.6487 3.9635 11 6 3.5868 0.3226 4.6880 12 6 3.6835 -0.0214 6.0048 13 6 4.9433 -0.0357 6.6340 14 6 5.0516 -0.3848 7.9980 15 1 5.8902 -0.0327 8.5806 16 6 4.0729 -1.1867 8.5947 17 7 3.2644 -1.8963 7.8491 18 14 3.9198 -1.2448 10.4554 19 1 2.9775 -0.1899 10.9078 20 1 3.4078 -2.5761 10.8687 21 1 5.2522 -1.0145 11.0692 22 6 6.0946 0.3005 5.8957 23 6 5.9812 0.6375 4.5785 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8307 -0.5261 -0.7813 28 1 3.8243 2.3794 0.5290 29 1 4.0312 0.6709 0.0746 30 1 2.6839 1.6855 2.6187 31 1 2.8908 -0.0229 2.1643 32 1 2.6211 0.3380 4.2050 33 1 2.7959 -0.2780 6.5641 34 1 2.5855 -2.4521 8.2628 35 1 7.0642 0.2923 6.3711 36 1 6.8630 0.8960 4.0110 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402404124.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:48 Heat of formation + Delta-G solvation = -12.001143 kcal Electronic energy + Delta-G solvation = -18150.762879 eV Core-core repulsion = 15213.191888 eV Total energy + Delta-G solvation = -2937.570991 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.46648 -39.17774 -38.00067 -36.47432 -35.18138 -33.05516 -31.43966 -30.87139 -28.19127 -26.47431 -25.15122 -23.59656 -22.65659 -21.72122 -19.51915 -19.18649 -18.39254 -17.09664 -17.01635 -16.11969 -16.00067 -15.87286 -15.66689 -15.13410 -14.63916 -14.42726 -14.14739 -13.99242 -13.87567 -13.69240 -13.59258 -13.34341 -12.94346 -12.73538 -12.66140 -12.44491 -12.30742 -12.17942 -11.97818 -11.57485 -11.31621 -11.10619 -10.78021 -9.75669 -9.46998 -8.81787 -8.53499 -6.15603 1.02158 1.13303 1.43309 1.51670 1.55640 1.56898 1.57193 2.27183 2.51306 2.79110 2.98967 3.19622 3.78583 4.00696 4.06387 4.29192 4.41585 4.45369 4.52782 4.61232 4.62598 4.69665 4.94299 5.07101 5.08899 5.12574 5.22437 5.24230 5.45298 5.62692 5.75109 5.77023 6.07609 6.14025 6.21538 6.32651 6.36507 6.64755 6.89562 7.02298 7.20524 8.42743 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.033188 B = 0.003702 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.463555 B = 7562.480592 C = 8262.619117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.676 5.676 3 C 0.196 3.804 4 H 0.148 0.852 5 C 0.205 3.795 6 N -0.471 5.471 7 C -0.093 4.093 8 C 0.069 3.931 9 O -0.339 6.339 10 C 0.007 3.993 11 C -0.173 4.173 12 C -0.155 4.155 13 C 0.052 3.948 14 C -0.502 4.502 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.831 5.831 18 Si 0.980 3.020 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.261 1.261 22 C -0.207 4.207 23 C -0.125 4.125 24 H 0.027 0.973 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.356 0.644 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.286 0.714 35 H 0.106 0.894 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 3.024 -9.820 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.307 5.307 3 C 0.083 3.917 4 H 0.165 0.835 5 C -0.115 4.115 6 N -0.149 5.149 7 C -0.132 4.132 8 C -0.006 4.006 9 O -0.255 6.255 10 C -0.037 4.037 11 C -0.191 4.191 12 C -0.174 4.174 13 C 0.050 3.950 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.458 5.458 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.185 1.185 22 C -0.227 4.227 23 C -0.144 4.144 24 H 0.045 0.955 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.175 0.825 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.124 0.876 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.595 3.384 -10.861 13.150 hybrid contribution -0.407 -0.186 0.287 0.532 sum -7.003 3.198 -10.574 13.079 Atomic orbital electron populations 1.22434 0.85590 1.03616 1.01343 1.60746 1.09846 1.09747 1.50322 1.19397 0.98758 0.91175 0.82403 0.83495 1.30810 0.91932 0.92755 0.96034 1.81235 1.09716 1.09500 1.14432 1.21324 0.94660 1.03840 0.93407 1.22555 0.82974 1.02040 0.93032 1.85745 1.31706 1.85818 1.22211 1.18645 0.94091 1.07555 0.83420 1.20856 0.97173 1.05597 0.95516 1.20928 0.97705 1.04196 0.94586 1.17947 0.91656 0.91429 0.93936 1.19703 1.08639 1.29210 0.95630 0.90922 1.26664 0.93672 0.92407 1.05132 1.69889 1.16437 1.19899 1.39538 0.85242 0.79576 0.78467 0.76626 1.18764 1.19452 1.18494 1.20777 0.97449 1.10530 0.93915 1.19898 0.95079 1.04757 0.94657 0.95477 0.89870 0.90048 0.82502 0.89317 0.90185 0.92158 0.91469 0.85820 0.87579 0.90329 0.87617 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.49 127.69 1.34 1.55 16 2 N -0.68 -9.34 6.05 -524.12 -3.17 -12.50 16 3 C 0.20 2.73 2.44 43.11 0.11 2.83 16 4 H 0.15 1.45 7.80 -2.39 -0.02 1.43 16 5 C 0.20 3.70 14.43 89.44 1.29 4.99 16 6 N -0.47 -11.37 18.54 20.01 0.37 -11.00 16 7 C -0.09 -1.71 5.22 30.59 0.16 -1.55 16 8 C 0.07 1.81 4.62 71.98 0.33 2.14 16 9 O -0.34 -12.31 10.12 -89.98 -0.91 -13.22 16 10 C 0.01 0.30 6.71 22.79 0.15 0.45 16 11 C -0.17 -7.73 8.96 22.11 0.20 -7.54 16 12 C -0.15 -8.00 8.64 22.48 0.19 -7.80 16 13 C 0.05 2.83 5.57 -21.28 -0.12 2.71 16 14 C -0.50 -27.11 9.04 23.40 0.21 -26.90 16 15 H 0.07 3.80 7.91 -2.91 -0.02 3.78 16 16 C 0.03 1.76 5.13 85.24 0.44 2.20 16 17 N -0.83 -43.16 10.96 21.82 0.24 -42.92 16 18 Si 0.98 38.16 29.59 68.60 2.03 40.19 16 19 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 20 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 C -0.21 -10.21 9.74 22.48 0.22 -9.99 16 23 C -0.13 -5.64 9.92 22.11 0.22 -5.42 16 24 H 0.03 0.29 7.98 -2.39 -0.02 0.27 16 25 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.08 0.83 8.05 -2.39 -0.02 0.81 16 27 H 0.36 4.49 8.54 -89.70 -0.77 3.72 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.46 7.64 -2.39 -0.02 1.44 16 31 H 0.07 1.83 7.27 -2.39 -0.02 1.81 16 32 H 0.12 4.73 6.27 -2.91 -0.02 4.71 16 33 H 0.11 5.70 6.16 -2.91 -0.02 5.69 16 34 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 35 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 36 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -63.46 313.96 3.63 -59.83 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.33 Total: 21.96 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 4.74 Total: -42.33 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -2.56 Total: -66.42 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -0.91 Total: -13.22 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -63.46 3.63 -59.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402404124.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.831 kcal (2) G-P(sol) polarization free energy of solvation -63.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds