Wall clock time and date at job start Mon Mar 30 2020 05:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47033 * 2 1 4 4 C 1.53007 * 109.47033 * 240.00380 * 2 1 3 5 5 S 1.81404 * 109.47410 * 120.00548 * 2 1 3 6 6 N 1.65592 * 108.33085 * 181.40012 * 5 2 1 7 7 O 1.42100 * 114.64407 * 302.49849 * 5 2 1 8 8 N 1.49352 * 108.33381 * 63.60642 * 5 2 1 9 9 C 1.46495 * 120.00057 * 174.92873 * 8 5 2 10 10 C 1.52992 * 109.47136 * 183.07979 * 9 8 5 11 11 C 1.50709 * 115.55234 * 279.50372 * 10 9 8 12 12 H 1.07997 * 119.99672 * 114.87939 * 11 10 9 13 13 C 1.37877 * 119.99595 * 294.88447 * 11 10 9 14 14 N 1.31513 * 120.00365 * 355.62405 * 13 11 10 15 15 Si 1.86805 * 119.99455 * 175.63008 * 13 11 10 16 16 H 1.48496 * 109.47203 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47080 * 119.99706 * 15 13 11 18 18 H 1.48497 * 109.46901 * 239.99490 * 15 13 11 19 19 C 1.53008 * 117.49969 * 133.79755 * 10 9 8 20 20 C 1.52993 * 59.99881 * 252.50765 * 19 10 9 21 21 H 1.09005 * 109.47186 * 301.46744 * 1 2 3 22 22 H 1.08996 * 109.47273 * 61.47337 * 1 2 3 23 23 H 1.09004 * 109.46954 * 181.47709 * 1 2 3 24 24 H 1.08999 * 109.46970 * 180.02562 * 3 2 1 25 25 H 1.08996 * 109.47428 * 300.00334 * 3 2 1 26 26 H 1.08996 * 109.46953 * 60.00713 * 3 2 1 27 27 H 1.09004 * 109.46982 * 301.15657 * 4 2 1 28 28 H 1.09003 * 109.46861 * 61.15479 * 4 2 1 29 29 H 1.09001 * 109.47126 * 181.15390 * 4 2 1 30 30 H 0.97007 * 120.00037 * 304.92930 * 6 5 2 31 31 H 0.96997 * 120.00522 * 124.93732 * 6 5 2 32 32 H 1.09006 * 109.47067 * 63.07517 * 9 8 5 33 33 H 1.09008 * 109.47123 * 303.07795 * 9 8 5 34 34 H 0.96995 * 119.99831 * 185.04352 * 14 13 11 35 35 H 1.09000 * 117.49803 * 0.02562 * 19 10 9 36 36 H 1.09003 * 117.49676 * 145.01436 * 19 10 9 37 37 H 1.08995 * 117.50025 * 252.50728 * 20 19 10 38 38 H 1.09004 * 117.51467 * 107.47804 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 16 2.1347 -0.8553 1.4811 6 7 3.7899 -0.8056 1.4718 7 8 1.6781 -0.3070 2.7099 8 7 1.6972 -2.2816 1.4115 9 6 2.1438 -3.2353 2.4299 10 6 1.6206 -4.6311 2.0857 11 6 0.1882 -4.9011 2.4684 12 1 -0.5512 -5.0793 1.7016 13 6 -0.1784 -4.9204 3.7974 14 7 0.7358 -4.7891 4.7337 15 14 -1.9736 -5.1333 4.2680 16 1 -2.7963 -5.2585 3.0381 17 1 -2.1270 -6.3581 5.0935 18 1 -2.4245 -3.9519 5.0466 19 6 2.6075 -5.7971 2.1737 20 6 2.1459 -5.2871 0.8071 21 1 -0.3634 0.5365 0.8766 22 1 -0.3633 0.4908 -0.9029 23 1 -0.3633 -1.0274 0.0265 24 1 3.1299 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9562 0.8900 27 1 1.6598 -1.7427 -1.2598 28 1 1.6936 -0.1954 -2.1392 29 1 3.1298 -0.7392 -1.2391 30 1 4.2809 -1.1408 0.7053 31 1 4.2685 -0.4414 2.2328 32 1 1.7594 -2.9331 3.4041 33 1 3.2334 -3.2525 2.4586 34 1 0.4893 -4.8758 5.6677 35 1 3.6294 -5.5697 2.4773 36 1 2.2208 -6.7596 2.5087 37 1 1.4555 -5.9141 0.2430 38 1 2.8639 -4.7239 0.2110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404154306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:51 Heat of formation + Delta-G solvation = 20.469538 kcal Electronic energy + Delta-G solvation = -18758.682598 eV Core-core repulsion = 15957.963593 eV Total energy + Delta-G solvation = -2800.719005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -36.60243 -36.38090 -35.63572 -32.74704 -32.16535 -31.73130 -27.61292 -27.37237 -25.61685 -24.36286 -21.32215 -20.84873 -18.74544 -18.09079 -16.94064 -16.39605 -15.67962 -15.38639 -14.67125 -14.41034 -14.24018 -13.81577 -13.61683 -12.91440 -12.67540 -12.57574 -12.41025 -11.85980 -11.71007 -11.44916 -11.37353 -11.29952 -11.24762 -10.81302 -10.68376 -10.45893 -10.26861 -10.01601 -9.77381 -9.43226 -8.73196 -8.39388 -8.07801 -7.81804 -7.59462 -5.79987 -3.80044 0.41236 3.28687 3.43304 3.51310 3.55058 4.10046 4.33996 4.60249 4.66976 4.80146 4.87410 5.25650 5.34288 5.45140 5.52885 5.58070 5.67751 5.71238 5.75541 5.79955 6.10160 6.20096 6.31439 6.41221 6.66026 6.77484 6.92515 6.99730 7.15250 7.30785 7.45235 7.62800 7.86321 8.09029 8.18362 8.74904 9.17468 9.80196 11.29203 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.007320 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.266390 B = 3824.137483 C = 4194.277378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.457 4.457 3 C -0.144 4.144 4 C -0.132 4.132 5 S 2.434 3.566 6 N -1.276 6.276 7 O -0.978 6.978 8 N -1.076 6.076 9 C 0.174 3.826 10 C 0.085 3.915 11 C -0.468 4.468 12 H 0.058 0.942 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.886 3.114 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.285 1.285 19 C -0.185 4.185 20 C -0.193 4.193 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.404 0.596 31 H 0.399 0.601 32 H 0.062 0.938 33 H 0.012 0.988 34 H 0.257 0.743 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.942 11.325 -11.492 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.555 4.555 3 C -0.202 4.202 4 C -0.190 4.190 5 S 2.536 3.464 6 N -0.932 5.932 7 O -0.956 6.956 8 N -0.994 5.994 9 C 0.045 3.955 10 C 0.081 3.919 11 C -0.507 4.507 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.524 5.524 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.211 1.211 19 C -0.224 4.224 20 C -0.231 4.231 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.109 0.891 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.229 0.771 31 H 0.225 0.775 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.176 11.587 -10.895 16.726 hybrid contribution -0.006 0.297 0.476 0.561 sum 5.170 11.884 -10.420 16.629 Atomic orbital electron populations 1.21748 0.88970 1.05327 1.03376 1.28762 1.06421 1.05744 1.14575 1.21841 1.01469 0.92536 1.04374 1.21725 1.00638 1.02165 0.94502 1.14167 0.74776 0.80424 0.77025 1.54656 1.29742 1.80322 1.28512 1.93451 1.78355 1.84342 1.39487 1.75040 1.49424 1.18993 1.55896 1.20585 0.92942 0.91055 0.90928 1.18504 0.93308 0.86724 0.93339 1.20525 0.92112 1.46664 0.91384 0.92348 1.24970 0.96862 0.95211 0.96668 1.69955 1.32633 1.49947 0.99885 0.86625 0.86056 0.77390 0.78466 1.19759 1.21277 1.21106 1.22826 0.98237 1.01221 1.00111 1.22667 1.03751 1.05545 0.91097 0.91467 0.90737 0.89136 0.91369 0.90079 0.91287 0.88944 0.90839 0.92136 0.77083 0.77511 0.91997 0.97029 0.93308 0.92279 0.90467 0.91132 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.48 37.16 0.32 -1.41 16 2 C -0.46 -5.49 1.10 -90.62 -0.10 -5.59 16 3 C -0.14 -1.34 8.48 37.16 0.32 -1.03 16 4 C -0.13 -1.30 8.40 37.16 0.31 -0.99 16 5 S 2.43 41.43 3.62 -107.50 -0.39 41.04 16 6 N -1.28 -16.25 9.35 60.35 0.56 -15.69 16 7 O -0.98 -21.90 18.03 -35.23 -0.64 -22.54 16 8 N -1.08 -23.06 10.34 -10.61 -0.11 -23.17 16 9 C 0.17 4.42 5.72 -4.05 -0.02 4.40 16 10 C 0.08 2.25 1.51 -155.66 -0.23 2.02 16 11 C -0.47 -13.72 8.84 -34.44 -0.30 -14.02 16 12 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 13 C 0.06 1.89 5.30 -17.82 -0.09 1.80 16 14 N -0.89 -26.84 12.35 55.43 0.68 -26.15 16 15 Si 0.89 22.62 29.54 -169.99 -5.02 17.60 16 16 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 19 C -0.18 -4.54 9.88 -26.73 -0.26 -4.80 16 20 C -0.19 -4.44 9.91 -26.74 -0.26 -4.71 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 30 H 0.40 4.02 8.57 -34.47 -0.30 3.72 16 31 H 0.40 4.79 8.96 -34.47 -0.31 4.48 16 32 H 0.06 1.83 7.09 -51.93 -0.37 1.46 16 33 H 0.01 0.27 7.78 -51.92 -0.40 -0.13 16 34 H 0.26 7.43 8.32 -40.82 -0.34 7.09 16 35 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 36 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 37 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -36.14 326.00 -6.73 -42.86 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.39 Total: 5.46 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -0.34 Total: -24.33 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: 1.14 Total: -65.01 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.64 Total: -22.54 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 41.43 SS G_CDS: -0.39 Total: 41.04 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.14 -6.73 -42.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404154306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.333 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds