Wall clock time and date at job start Mon Mar 30 2020 04:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86792 * 120.00350 * 2 1 4 4 H 1.48500 * 109.47166 * 270.00095 * 3 2 1 5 5 H 1.48508 * 109.46935 * 29.99863 * 3 2 1 6 6 H 1.48495 * 109.47623 * 149.99818 * 3 2 1 7 7 C 1.40050 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00145 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99990 * 359.97438 * 9 7 2 11 11 N 1.34783 * 119.99988 * 180.02562 * 9 7 2 12 12 C 1.46501 * 119.99630 * 185.20021 * 11 9 7 13 13 H 1.08997 * 109.47242 * 5.62658 * 12 11 9 14 14 C 1.50699 * 109.46974 * 125.63206 * 12 11 9 15 15 C 1.38230 * 119.61569 * 244.99379 * 14 12 11 16 16 C 1.38628 * 119.15646 * 179.97438 * 15 14 12 17 17 C 1.38668 * 118.42350 * 0.02562 * 16 15 14 18 18 C 1.38175 * 119.16623 * 359.97438 * 17 16 15 19 19 N 1.31855 * 119.61805 * 64.72258 * 14 12 11 20 20 C 1.52998 * 109.46708 * 245.62929 * 12 11 9 21 21 C 1.53785 * 113.61523 * 60.32657 * 20 12 11 22 22 C 1.53783 * 87.07905 * 219.93172 * 21 20 12 23 23 C 1.53783 * 87.17491 * 25.39036 * 22 21 20 24 24 H 0.96997 * 119.99584 * 0.02562 * 1 2 3 25 25 H 0.96992 * 119.99895 * 5.19431 * 11 9 7 26 26 H 1.07994 * 120.42126 * 0.02562 * 15 14 12 27 27 H 1.08003 * 120.78386 * 180.02562 * 16 15 14 28 28 H 1.08003 * 120.41773 * 180.02562 * 17 16 15 29 29 H 1.07999 * 119.62260 * 179.97438 * 18 17 16 30 30 H 1.09003 * 112.85050 * 191.52000 * 20 12 11 31 31 H 1.08998 * 113.61110 * 105.38507 * 21 20 12 32 32 H 1.08994 * 113.61273 * 334.47883 * 21 20 12 33 33 H 1.09000 * 113.60996 * 139.98137 * 22 21 20 34 34 H 1.09002 * 113.61834 * 270.79705 * 22 21 20 35 35 H 1.08993 * 113.61380 * 89.15504 * 23 22 21 36 36 H 1.08995 * 113.61183 * 220.05957 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6478 0.0016 12 6 1.2209 -4.9139 -0.1134 13 1 0.1646 -4.7109 -0.2895 14 6 1.7781 -5.7109 -1.2646 15 6 0.9819 -5.9709 -2.3643 16 6 1.5044 -6.7045 -3.4181 17 6 2.8137 -7.1518 -3.3259 18 6 3.5493 -6.8530 -2.1950 19 7 3.0212 -6.1477 -1.2136 20 6 1.3777 -5.7118 1.1826 21 6 0.8301 -4.9861 2.4229 22 6 2.0557 -5.5228 3.1810 23 6 2.7727 -5.5876 1.8220 24 1 -0.4849 0.8401 -0.0004 25 1 2.9158 -3.6495 0.0784 26 1 -0.0339 -5.6064 -2.4023 27 1 0.9058 -6.9226 -4.2902 28 1 3.2533 -7.7257 -4.1283 29 1 4.5696 -7.1980 -2.1152 30 1 1.0312 -6.7411 1.0905 31 1 -0.1166 -5.3895 2.7822 32 1 0.8187 -3.9007 2.3241 33 1 2.4926 -4.8011 3.8712 34 1 1.8941 -6.4998 3.6364 35 1 3.2933 -4.6670 1.5587 36 1 3.3920 -6.4759 1.6971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529831614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:47 Heat of formation + Delta-G solvation = 13.541229 kcal Electronic energy + Delta-G solvation = -19464.964996 eV Core-core repulsion = 16528.501606 eV Total energy + Delta-G solvation = -2936.463390 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.18411 -38.54725 -36.60452 -33.44380 -32.39215 -32.07671 -30.78670 -27.70193 -25.77237 -25.05315 -23.65515 -23.10258 -21.19417 -19.83678 -18.25988 -17.46798 -16.53913 -15.98588 -15.42397 -15.29293 -15.04678 -14.77254 -14.01186 -13.55971 -13.39399 -12.90079 -12.83658 -12.34997 -12.17371 -11.76619 -11.68001 -11.57150 -11.13192 -10.96959 -10.77109 -10.43383 -10.25849 -10.08538 -9.84522 -9.64647 -9.60459 -9.15885 -8.84380 -8.73165 -7.59085 -7.49015 -6.17977 -4.62874 1.34073 1.50870 3.14760 3.21906 3.25349 4.00484 4.14465 4.51350 4.65933 4.80343 4.98685 5.08978 5.22715 5.26065 5.29728 5.32029 5.42736 5.47885 5.77170 5.85450 5.96024 6.02874 6.10416 6.18536 6.33550 6.35505 6.42027 6.46672 6.53847 6.60272 6.81314 6.97680 7.12131 7.44699 7.97754 8.11868 8.28437 8.37702 9.03836 9.56011 10.60460 10.79166 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.006699 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.301548 B = 4178.765588 C = 4968.306631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.557 3.443 10 O -0.580 6.580 11 N -0.747 5.747 12 C 0.205 3.795 13 H 0.105 0.895 14 C 0.138 3.862 15 C -0.162 4.162 16 C -0.078 4.078 17 C -0.187 4.187 18 C 0.094 3.906 19 N -0.468 5.468 20 C -0.111 4.111 21 C -0.128 4.128 22 C -0.147 4.147 23 C -0.114 4.114 24 H 0.268 0.732 25 H 0.385 0.615 26 H 0.134 0.866 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.150 0.850 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -12.507 -2.232 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.463 6.463 11 N -0.401 5.401 12 C 0.097 3.903 13 H 0.123 0.877 14 C -0.001 4.001 15 C -0.182 4.182 16 C -0.104 4.104 17 C -0.207 4.207 18 C -0.064 4.064 19 N -0.178 5.178 20 C -0.131 4.131 21 C -0.165 4.165 22 C -0.185 4.185 23 C -0.151 4.151 24 H 0.078 0.922 25 H 0.218 0.782 26 H 0.152 0.848 27 H 0.147 0.853 28 H 0.145 0.855 29 H 0.167 0.833 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.470 -12.170 -1.501 13.052 hybrid contribution 0.444 0.512 -0.968 1.182 sum 4.914 -11.659 -2.469 12.891 Atomic orbital electron populations 1.70015 1.06980 1.27191 1.35408 1.25679 0.94597 1.00185 0.92622 0.86408 0.80235 0.81538 0.78799 1.19826 1.20460 1.18903 1.20882 0.93593 0.89386 1.54198 0.91539 1.18231 0.87210 0.82408 0.76052 1.90589 1.14002 1.86562 1.55118 1.46147 1.09247 1.03856 1.80867 1.19355 0.97860 0.84168 0.88946 0.87717 1.21961 0.89423 0.93369 0.95370 1.22086 1.01961 0.99714 0.94478 1.21525 0.95329 0.95483 0.98109 1.22033 0.95625 1.03097 0.99977 1.22726 0.99686 0.94419 0.89523 1.67530 1.12539 1.09085 1.28616 1.22832 0.97877 0.98206 0.94220 1.22877 0.96403 1.01964 0.95254 1.22831 0.98410 1.00257 0.96990 1.22730 0.95813 1.01949 0.94648 0.92166 0.78193 0.84813 0.85303 0.85464 0.83298 0.90362 0.92620 0.88742 0.92021 0.91331 0.89610 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.79 11.83 55.55 0.66 -22.13 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.25 29.56 -169.99 -5.02 15.22 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -15.30 9.54 -35.63 -0.34 -15.64 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.45 7.22 -12.99 -0.09 15.35 16 10 O -0.58 -18.07 14.38 5.20 0.07 -17.99 16 11 N -0.75 -16.68 3.79 -56.34 -0.21 -16.89 16 12 C 0.20 3.99 2.66 -69.08 -0.18 3.81 16 13 H 0.10 2.29 6.68 -51.93 -0.35 1.95 16 14 C 0.14 2.40 5.76 -82.59 -0.48 1.93 16 15 C -0.16 -2.55 9.71 -39.44 -0.38 -2.93 16 16 C -0.08 -1.01 10.18 -39.28 -0.40 -1.41 16 17 C -0.19 -2.23 10.11 -39.45 -0.40 -2.63 16 18 C 0.09 1.25 11.18 -17.55 -0.20 1.05 16 19 N -0.47 -7.62 9.53 -9.47 -0.09 -7.71 16 20 C -0.11 -1.90 3.46 -89.71 -0.31 -2.21 16 21 C -0.13 -2.27 7.53 -25.92 -0.20 -2.47 16 22 C -0.15 -2.24 8.08 -25.92 -0.21 -2.45 16 23 C -0.11 -1.82 6.91 -25.83 -0.18 -2.00 16 24 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 25 H 0.38 8.15 7.25 -40.82 -0.30 7.86 16 26 H 0.13 2.04 7.95 -52.49 -0.42 1.62 16 27 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 28 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 29 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 2.05 7.25 -51.93 -0.38 1.68 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.49 6.06 -51.93 -0.31 1.18 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 304.44 15.07 4.59 4.59 Total: -1.00 -32.71 304.44 -8.15 -40.86 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.68 Total: 11.28 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -3.46 Total: -7.22 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.35 Total: -46.74 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: 0.07 Total: -17.99 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.71 -8.15 -40.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529831614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.398 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds