Wall clock time and date at job start Mon Mar 30 2020 04:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86792 * 120.00350 * 2 1 4 4 H 1.48500 * 109.47166 * 270.00095 * 3 2 1 5 5 H 1.48508 * 109.46935 * 29.99863 * 3 2 1 6 6 H 1.48495 * 109.47623 * 149.99818 * 3 2 1 7 7 C 1.40050 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00240 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00145 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99990 * 359.97438 * 9 7 2 11 11 N 1.34783 * 119.99988 * 180.02562 * 9 7 2 12 12 C 1.46501 * 119.99630 * 185.20021 * 11 9 7 13 13 H 1.08997 * 109.47242 * 5.62658 * 12 11 9 14 14 C 1.50699 * 109.46974 * 125.63206 * 12 11 9 15 15 C 1.38230 * 119.61569 * 244.99379 * 14 12 11 16 16 C 1.38628 * 119.15646 * 179.97438 * 15 14 12 17 17 C 1.38668 * 118.42350 * 0.02562 * 16 15 14 18 18 C 1.38175 * 119.16623 * 359.97438 * 17 16 15 19 19 N 1.31855 * 119.61805 * 64.72258 * 14 12 11 20 20 C 1.52998 * 109.46708 * 245.62929 * 12 11 9 21 21 C 1.53785 * 113.61523 * 60.32657 * 20 12 11 22 22 C 1.53783 * 87.07905 * 219.93172 * 21 20 12 23 23 C 1.53783 * 87.17491 * 25.39036 * 22 21 20 24 24 H 0.96997 * 119.99584 * 0.02562 * 1 2 3 25 25 H 0.96992 * 119.99895 * 5.19431 * 11 9 7 26 26 H 1.07994 * 120.42126 * 0.02562 * 15 14 12 27 27 H 1.08003 * 120.78386 * 180.02562 * 16 15 14 28 28 H 1.08003 * 120.41773 * 180.02562 * 17 16 15 29 29 H 1.07999 * 119.62260 * 179.97438 * 18 17 16 30 30 H 1.09003 * 112.85050 * 191.52000 * 20 12 11 31 31 H 1.08998 * 113.61110 * 105.38507 * 21 20 12 32 32 H 1.08994 * 113.61273 * 334.47883 * 21 20 12 33 33 H 1.09000 * 113.60996 * 139.98137 * 22 21 20 34 34 H 1.09002 * 113.61834 * 270.79705 * 22 21 20 35 35 H 1.08993 * 113.61380 * 89.15504 * 23 22 21 36 36 H 1.08995 * 113.61183 * 220.05957 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6478 0.0016 12 6 1.2209 -4.9139 -0.1134 13 1 0.1646 -4.7109 -0.2895 14 6 1.7781 -5.7109 -1.2646 15 6 0.9819 -5.9709 -2.3643 16 6 1.5044 -6.7045 -3.4181 17 6 2.8137 -7.1518 -3.3259 18 6 3.5493 -6.8530 -2.1950 19 7 3.0212 -6.1477 -1.2136 20 6 1.3777 -5.7118 1.1826 21 6 0.8301 -4.9861 2.4229 22 6 2.0557 -5.5228 3.1810 23 6 2.7727 -5.5876 1.8220 24 1 -0.4849 0.8401 -0.0004 25 1 2.9158 -3.6495 0.0784 26 1 -0.0339 -5.6064 -2.4023 27 1 0.9058 -6.9226 -4.2902 28 1 3.2533 -7.7257 -4.1283 29 1 4.5696 -7.1980 -2.1152 30 1 1.0312 -6.7411 1.0905 31 1 -0.1166 -5.3895 2.7822 32 1 0.8187 -3.9007 2.3241 33 1 2.4926 -4.8011 3.8712 34 1 1.8941 -6.4998 3.6364 35 1 3.2933 -4.6670 1.5587 36 1 3.3920 -6.4759 1.6971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529831614.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:47 Heat of formation + Delta-G solvation = -7.897305 kcal Electronic energy + Delta-G solvation = -19465.894641 eV Core-core repulsion = 16528.501606 eV Total energy + Delta-G solvation = -2937.393035 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46035 -39.96988 -38.53709 -35.15629 -34.42444 -33.24522 -32.29289 -29.32148 -27.70463 -26.45681 -24.87002 -24.23407 -22.72229 -21.59288 -19.76432 -19.37899 -17.78157 -17.54156 -17.09116 -16.64728 -16.54171 -16.10362 -15.79275 -15.04989 -14.59481 -14.48785 -14.18241 -13.99831 -13.82266 -13.36187 -13.14508 -12.98728 -12.76749 -12.74467 -12.59556 -12.17817 -12.01306 -11.49463 -11.20601 -11.00735 -10.93235 -10.74300 -10.35711 -9.96489 -9.73058 -9.37677 -8.28497 -6.84734 0.21038 0.43371 1.38141 1.39531 1.54502 2.23860 2.47765 2.84867 3.26440 3.35348 3.66254 3.70657 3.88485 3.91408 4.04366 4.08736 4.15000 4.26831 4.32208 4.61750 4.71900 4.77188 4.83780 4.88437 4.91025 5.03240 5.11540 5.20453 5.28484 5.31435 5.32523 5.45762 5.71701 5.85947 5.90937 6.23178 6.32867 6.87488 7.14531 7.56382 8.51139 8.68779 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.006699 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.301548 B = 4178.765588 C = 4968.306631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.032 3.968 3 Si 0.993 3.007 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.251 1.251 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.546 3.454 10 O -0.626 6.626 11 N -0.733 5.733 12 C 0.205 3.795 13 H 0.067 0.933 14 C 0.112 3.888 15 C -0.184 4.184 16 C -0.076 4.076 17 C -0.170 4.170 18 C 0.086 3.914 19 N -0.486 5.486 20 C -0.106 4.106 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.105 4.105 24 H 0.274 0.726 25 H 0.391 0.609 26 H 0.122 0.878 27 H 0.160 0.840 28 H 0.170 0.830 29 H 0.183 0.817 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.618 -13.923 -3.122 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.183 4.183 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.612 4.612 8 H 0.098 0.902 9 C 0.351 3.649 10 O -0.513 6.513 11 N -0.386 5.386 12 C 0.098 3.902 13 H 0.085 0.915 14 C -0.026 4.026 15 C -0.205 4.205 16 C -0.101 4.101 17 C -0.190 4.190 18 C -0.071 4.071 19 N -0.195 5.195 20 C -0.126 4.126 21 C -0.176 4.176 22 C -0.167 4.167 23 C -0.143 4.143 24 H 0.084 0.916 25 H 0.225 0.775 26 H 0.140 0.860 27 H 0.178 0.822 28 H 0.188 0.812 29 H 0.200 0.800 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.066 -13.635 -2.389 15.542 hybrid contribution -0.343 0.803 -0.773 1.166 sum 6.723 -12.832 -3.162 14.828 Atomic orbital electron populations 1.70176 1.09320 1.28805 1.36531 1.26880 0.95504 1.04641 0.91260 0.85091 0.78843 0.75455 0.79364 1.18725 1.19572 1.17461 1.21390 0.94443 0.90384 1.54942 0.90227 1.18475 0.86806 0.84027 0.75637 1.90542 1.15893 1.87620 1.57205 1.45775 1.09304 1.03910 1.79645 1.19316 0.95591 0.83533 0.91720 0.91461 1.21484 0.90712 0.95191 0.95203 1.22151 1.01737 1.01209 0.95410 1.21906 0.96290 0.94068 0.97880 1.22505 0.94691 1.01520 1.00255 1.23383 1.01173 0.93371 0.89202 1.67442 1.11753 1.10022 1.30315 1.22829 0.98901 0.98402 0.92429 1.22808 0.98425 0.99168 0.97226 1.22806 0.95920 1.01513 0.96500 1.22618 0.95072 1.01792 0.94775 0.91623 0.77460 0.85969 0.82202 0.81220 0.79965 0.88468 0.91846 0.93544 0.91874 0.88326 0.91500 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.68 11.83 21.84 0.26 -50.42 16 2 C 0.03 1.84 5.50 85.31 0.47 2.31 16 3 Si 0.99 41.98 29.56 68.60 2.03 44.01 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.57 -33.51 9.54 24.83 0.24 -33.27 16 8 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 9 C 0.55 32.16 7.22 86.36 0.62 32.78 16 10 O -0.63 -41.87 14.38 -4.32 -0.06 -41.93 16 11 N -0.73 -34.56 3.79 -450.39 -1.70 -36.27 16 12 C 0.21 8.47 2.66 44.24 0.12 8.59 16 13 H 0.07 3.24 6.68 -2.39 -0.02 3.23 16 14 C 0.11 3.96 5.76 42.55 0.25 4.20 16 15 C -0.18 -5.87 9.71 22.36 0.22 -5.65 16 16 C -0.08 -1.76 10.18 22.47 0.23 -1.53 16 17 C -0.17 -3.36 10.11 22.36 0.23 -3.13 16 18 C 0.09 2.01 11.18 84.67 0.95 2.96 16 19 N -0.49 -15.17 9.53 -183.88 -1.75 -16.92 16 20 C -0.11 -3.68 3.46 -10.21 -0.04 -3.72 16 21 C -0.14 -5.13 7.53 31.12 0.23 -4.90 16 22 C -0.13 -3.82 8.08 31.12 0.25 -3.57 16 23 C -0.10 -3.28 6.91 31.18 0.22 -3.07 16 24 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 25 H 0.39 17.24 7.25 -92.71 -0.67 16.57 16 26 H 0.12 4.01 7.95 -2.91 -0.02 3.98 16 27 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 30 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 2.17 7.25 -2.39 -0.02 2.15 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 2.35 6.06 -2.39 -0.01 2.33 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -76.15 304.44 3.16 -72.99 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: 0.42 Total: 36.53 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 3.98 Total: -7.99 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -3.20 Total: -103.60 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -0.06 Total: -41.93 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -76.15 3.16 -72.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529831614.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.090 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds