Wall clock time and date at job start Mon Mar 30 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99719 * 2 1 4 4 H 1.48510 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47303 * 299.99469 * 3 2 1 6 6 H 1.48498 * 109.47149 * 59.99759 * 3 2 1 7 7 C 1.37881 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.73728 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 137.95278 * 10 9 7 12 12 C 1.34776 * 134.49098 * 155.35611 * 11 10 9 13 13 O 1.21631 * 120.00355 * 0.02562 * 12 11 10 14 14 C 1.47258 * 120.00138 * 179.97438 * 12 11 10 15 15 C 1.46688 * 126.93844 * 0.02603 * 14 12 11 16 16 C 1.34490 * 106.33502 * 179.97438 * 15 14 12 17 17 N 1.36447 * 108.85344 * 0.02562 * 16 15 14 18 18 H 0.97000 * 124.85651 * 179.97438 * 17 16 15 19 19 C 1.34662 * 110.29689 * 359.75125 * 17 16 15 20 20 C 1.50703 * 125.80296 * 180.29739 * 19 17 16 21 21 C 1.53000 * 117.49653 * 8.74611 * 20 19 17 22 22 C 1.53001 * 60.00505 * 252.51454 * 21 20 19 23 23 C 1.47576 * 91.01498 * 335.35788 * 11 10 9 24 24 H 0.97003 * 120.00094 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.01745 * 48.34091 * 9 7 2 26 26 H 1.09001 * 113.76955 * 252.25313 * 10 9 7 27 27 H 1.08997 * 113.77064 * 23.65389 * 10 9 7 28 28 H 1.08004 * 126.83905 * 359.95993 * 15 14 12 29 29 H 1.07995 * 125.57955 * 180.02562 * 16 15 14 30 30 H 1.08996 * 115.55283 * 154.46257 * 20 19 17 31 31 H 1.09003 * 117.50245 * 0.02562 * 21 20 19 32 32 H 1.09007 * 117.49663 * 145.02275 * 21 20 19 33 33 H 1.08999 * 117.50199 * 252.51683 * 22 21 20 34 34 H 1.08994 * 117.49581 * 107.48673 * 22 21 20 35 35 H 1.09003 * 113.77250 * 270.33779 * 23 11 10 36 36 H 1.08995 * 113.76824 * 138.94137 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1615 -3.7405 0.0005 11 7 1.2207 -4.3066 0.9867 12 6 0.8823 -5.5567 1.3598 13 8 1.4114 -6.5143 0.8282 14 6 -0.1272 -5.7633 2.4117 15 6 -0.8561 -4.7263 3.1500 16 6 -1.6693 -5.3715 4.0051 17 7 -1.4957 -6.7159 3.8493 18 1 -1.9680 -7.3978 4.3521 19 6 -0.5784 -6.9608 2.8943 20 6 -0.1245 -8.3230 2.4365 21 6 -0.8961 -9.5369 2.9582 22 6 0.5118 -9.2433 3.4803 23 6 0.7993 -2.9541 1.4002 24 1 -0.4850 0.8401 -0.0004 25 1 0.4607 -2.5350 -0.7493 26 1 2.1762 -4.2746 -0.9495 27 1 3.1581 -3.5543 0.4007 28 1 -0.7590 -3.6572 3.0308 29 1 -2.3486 -4.9023 4.7013 30 1 0.2634 -8.3720 1.4191 31 1 -1.7322 -9.3503 3.6321 32 1 -1.0161 -10.3848 2.2837 33 1 1.3180 -9.8979 3.1493 34 1 0.6021 -8.8635 4.4979 35 1 1.3957 -2.5368 2.2115 36 1 -0.2737 -2.8602 1.5676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598024442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:39 Heat of formation + Delta-G solvation = 68.492508 kcal Electronic energy + Delta-G solvation = -18947.702428 eV Core-core repulsion = 16013.621904 eV Total energy + Delta-G solvation = -2934.080524 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.15353 -38.86665 -36.90738 -36.55080 -32.59987 -31.02639 -29.03578 -28.68236 -25.27555 -25.03725 -22.86069 -22.55470 -21.65240 -20.26031 -19.56327 -17.94656 -17.35397 -16.61985 -15.53687 -15.41533 -14.91090 -14.65812 -14.38795 -14.12443 -13.99307 -13.07012 -12.74598 -12.45533 -12.28242 -11.91659 -11.75400 -11.72164 -11.45388 -11.15010 -10.89375 -10.76801 -10.66064 -10.47136 -10.28238 -9.49108 -9.15791 -8.81769 -8.60621 -8.51167 -7.99795 -7.57637 -6.11879 -4.16704 1.98817 2.68710 3.20625 3.26597 3.35460 3.39343 3.77144 3.89827 4.19503 4.39361 4.48854 4.74882 4.92268 5.11674 5.19123 5.22178 5.40802 5.45989 5.69961 5.74801 5.90106 5.98570 6.16034 6.22216 6.30419 6.38203 6.44640 6.52350 6.72251 6.87513 6.89705 7.00229 7.22333 7.56084 7.64557 7.86585 8.25881 8.72545 8.86950 9.05928 9.49587 10.97809 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.037627 B = 0.004572 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.971712 B = 6122.131034 C = 6655.539286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.063 0.937 9 C 0.031 3.969 10 C 0.104 3.896 11 N -0.633 5.633 12 C 0.599 3.401 13 O -0.577 6.577 14 C -0.207 4.207 15 C -0.162 4.162 16 C -0.026 4.026 17 N -0.556 5.556 18 H 0.409 0.591 19 C 0.120 3.880 20 C -0.081 4.081 21 C -0.186 4.186 22 C -0.167 4.167 23 C 0.105 3.895 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.155 0.845 29 H 0.168 0.832 30 H 0.144 0.856 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -12.667 8.984 16.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.081 0.919 9 C 0.012 3.988 10 C -0.018 4.018 11 N -0.365 5.365 12 C 0.390 3.610 13 O -0.460 6.460 14 C -0.217 4.217 15 C -0.186 4.186 16 C -0.153 4.153 17 N -0.152 5.152 18 H 0.245 0.755 19 C 0.003 3.997 20 C -0.100 4.100 21 C -0.223 4.223 22 C -0.205 4.205 23 C -0.017 4.017 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.172 0.828 29 H 0.185 0.815 30 H 0.161 0.839 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.335 -13.264 8.847 16.522 hybrid contribution 0.038 0.784 0.484 0.922 sum -4.297 -12.480 9.331 16.164 Atomic orbital electron populations 1.69967 1.06013 1.26853 1.49553 1.25015 0.94841 0.99274 0.94427 0.86514 0.80238 0.83506 0.77632 1.19607 1.20950 1.20968 1.21035 0.93071 0.89772 1.51605 0.91886 1.20535 0.94383 0.91293 0.92604 1.23459 0.94281 0.93520 0.90512 1.50147 1.41856 1.04615 1.39929 1.17037 0.81238 0.81722 0.80978 1.90641 1.57166 1.40384 1.57768 1.20198 1.05199 0.92117 1.04203 1.22529 0.98598 0.99417 0.98050 1.21707 1.06007 0.81931 1.05613 1.41438 1.34069 1.07796 1.31854 0.75455 1.19213 0.93624 0.94191 0.92710 1.20812 1.03425 0.84785 1.00954 1.23008 0.95024 1.00067 1.04220 1.22998 0.96062 1.02650 0.98759 1.23741 0.99297 0.77013 1.01625 0.92797 0.91777 0.92190 0.91011 0.82759 0.81488 0.83886 0.89555 0.87953 0.87958 0.89004 0.90966 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 13.27 55.43 0.74 -23.55 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -13.39 8.77 -34.44 -0.30 -13.69 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.03 0.75 3.62 -90.85 -0.33 0.42 16 10 C 0.10 2.29 8.39 -2.97 -0.02 2.26 16 11 N -0.63 -13.94 3.61 -179.76 -0.65 -14.59 16 12 C 0.60 13.07 8.04 -12.60 -0.10 12.97 16 13 O -0.58 -13.53 15.62 5.25 0.08 -13.45 16 14 C -0.21 -3.86 6.28 -103.35 -0.65 -4.51 16 15 C -0.16 -2.65 10.04 -37.50 -0.38 -3.03 16 16 C -0.03 -0.33 11.89 -16.82 -0.20 -0.53 16 17 N -0.56 -6.60 5.80 -9.11 -0.05 -6.66 16 18 H 0.41 3.38 7.84 -40.82 -0.32 3.06 16 19 C 0.12 1.83 6.69 -81.88 -0.55 1.29 16 20 C -0.08 -1.11 5.61 -91.76 -0.51 -1.63 16 21 C -0.19 -1.79 10.13 -26.73 -0.27 -2.06 16 22 C -0.17 -1.82 10.24 -26.72 -0.27 -2.09 16 23 C 0.11 2.32 6.79 -2.98 -0.02 2.30 16 24 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.06 1.69 8.13 -51.93 -0.42 1.27 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.52 8.09 -51.93 -0.42 1.10 16 28 H 0.15 2.58 5.42 -52.48 -0.28 2.29 16 29 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.14 2.31 6.65 -51.93 -0.35 1.97 16 31 H 0.09 0.68 7.08 -51.93 -0.37 0.31 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.57 8.09 -51.93 -0.42 1.15 16 36 H 0.07 1.45 6.22 -51.93 -0.32 1.13 16 LS Contribution 305.37 15.07 4.60 4.60 Total: -1.00 -30.69 305.37 -8.57 -39.26 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.56 Total: 5.76 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.71 Total: -6.62 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.03 Total: -44.80 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.69 -8.57 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598024442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.757 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds