Wall clock time and date at job start Mon Mar 30 2020 04:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99719 * 2 1 4 4 H 1.48510 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47303 * 299.99469 * 3 2 1 6 6 H 1.48498 * 109.47149 * 59.99759 * 3 2 1 7 7 C 1.37881 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99568 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.53947 * 113.73728 * 179.97438 * 9 7 2 11 11 N 1.47584 * 86.11565 * 137.95278 * 10 9 7 12 12 C 1.34776 * 134.49098 * 155.35611 * 11 10 9 13 13 O 1.21631 * 120.00355 * 0.02562 * 12 11 10 14 14 C 1.47258 * 120.00138 * 179.97438 * 12 11 10 15 15 C 1.46688 * 126.93844 * 0.02603 * 14 12 11 16 16 C 1.34490 * 106.33502 * 179.97438 * 15 14 12 17 17 N 1.36447 * 108.85344 * 0.02562 * 16 15 14 18 18 H 0.97000 * 124.85651 * 179.97438 * 17 16 15 19 19 C 1.34662 * 110.29689 * 359.75125 * 17 16 15 20 20 C 1.50703 * 125.80296 * 180.29739 * 19 17 16 21 21 C 1.53000 * 117.49653 * 8.74611 * 20 19 17 22 22 C 1.53001 * 60.00505 * 252.51454 * 21 20 19 23 23 C 1.47576 * 91.01498 * 335.35788 * 11 10 9 24 24 H 0.97003 * 120.00094 * 0.02562 * 1 2 3 25 25 H 1.08999 * 113.01745 * 48.34091 * 9 7 2 26 26 H 1.09001 * 113.76955 * 252.25313 * 10 9 7 27 27 H 1.08997 * 113.77064 * 23.65389 * 10 9 7 28 28 H 1.08004 * 126.83905 * 359.95993 * 15 14 12 29 29 H 1.07995 * 125.57955 * 180.02562 * 16 15 14 30 30 H 1.08996 * 115.55283 * 154.46257 * 20 19 17 31 31 H 1.09003 * 117.50245 * 0.02562 * 21 20 19 32 32 H 1.09007 * 117.49663 * 145.02275 * 21 20 19 33 33 H 1.08999 * 117.50199 * 252.51683 * 22 21 20 34 34 H 1.08994 * 117.49581 * 107.48673 * 22 21 20 35 35 H 1.09003 * 113.77250 * 270.33779 * 23 11 10 36 36 H 1.08995 * 113.76824 * 138.94137 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1615 -3.7405 0.0005 11 7 1.2207 -4.3066 0.9867 12 6 0.8823 -5.5567 1.3598 13 8 1.4114 -6.5143 0.8282 14 6 -0.1272 -5.7633 2.4117 15 6 -0.8561 -4.7263 3.1500 16 6 -1.6693 -5.3715 4.0051 17 7 -1.4957 -6.7159 3.8493 18 1 -1.9680 -7.3978 4.3521 19 6 -0.5784 -6.9608 2.8943 20 6 -0.1245 -8.3230 2.4365 21 6 -0.8961 -9.5369 2.9582 22 6 0.5118 -9.2433 3.4803 23 6 0.7993 -2.9541 1.4002 24 1 -0.4850 0.8401 -0.0004 25 1 0.4607 -2.5350 -0.7493 26 1 2.1762 -4.2746 -0.9495 27 1 3.1581 -3.5543 0.4007 28 1 -0.7590 -3.6572 3.0308 29 1 -2.3486 -4.9023 4.7013 30 1 0.2634 -8.3720 1.4191 31 1 -1.7322 -9.3503 3.6321 32 1 -1.0161 -10.3848 2.2837 33 1 1.3180 -9.8979 3.1493 34 1 0.6021 -8.8635 4.4979 35 1 1.3957 -2.5368 2.2115 36 1 -0.2737 -2.8602 1.5676 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598024442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:38 Heat of formation + Delta-G solvation = 49.865933 kcal Electronic energy + Delta-G solvation = -18948.510137 eV Core-core repulsion = 16013.621904 eV Total energy + Delta-G solvation = -2934.888233 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.31180 -40.59213 -38.39297 -37.74713 -34.59686 -32.34766 -30.53389 -30.04517 -27.12608 -26.87148 -24.13064 -23.34932 -22.97860 -21.46905 -21.25579 -19.33967 -18.78549 -18.44724 -17.13090 -16.64340 -16.48876 -16.19922 -16.01685 -15.40062 -15.10066 -14.56330 -14.22014 -14.00522 -13.90809 -13.29645 -13.26687 -13.06592 -12.92502 -12.72946 -12.48818 -12.41417 -12.15426 -11.68642 -11.43361 -11.30222 -11.07514 -10.66259 -10.45719 -9.85777 -9.45978 -9.00103 -8.13412 -6.24751 0.69956 1.47538 1.50479 1.51918 1.61628 2.02441 2.37600 2.48221 2.55196 2.98176 3.16993 3.53397 3.82128 3.88689 4.07277 4.23214 4.27802 4.36119 4.48418 4.53559 4.62936 4.66941 4.69056 4.84218 4.89155 4.92492 4.97299 5.12491 5.14490 5.20261 5.34095 5.61788 5.75965 5.84108 5.99317 6.25961 6.64831 6.82954 6.99678 7.35978 7.45441 8.96763 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.037627 B = 0.004572 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.971712 B = 6122.131034 C = 6655.539286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.022 3.978 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.022 3.978 10 C 0.108 3.892 11 N -0.639 5.639 12 C 0.589 3.411 13 O -0.604 6.604 14 C -0.261 4.261 15 C -0.198 4.198 16 C 0.006 3.994 17 N -0.533 5.533 18 H 0.432 0.568 19 C 0.135 3.865 20 C -0.122 4.122 21 C -0.152 4.152 22 C -0.160 4.160 23 C 0.125 3.875 24 H 0.265 0.735 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.142 0.858 29 H 0.214 0.786 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 -13.577 11.265 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.568 4.568 8 H 0.083 0.917 9 C 0.003 3.997 10 C -0.014 4.014 11 N -0.372 5.372 12 C 0.384 3.616 13 O -0.489 6.489 14 C -0.271 4.271 15 C -0.221 4.221 16 C -0.121 4.121 17 N -0.131 5.131 18 H 0.273 0.727 19 C 0.016 3.984 20 C -0.141 4.141 21 C -0.189 4.189 22 C -0.197 4.197 23 C 0.003 3.997 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.160 0.840 29 H 0.230 0.770 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.334 -14.194 11.151 18.822 hybrid contribution 0.307 0.958 -0.226 1.031 sum -5.026 -13.236 10.925 17.883 Atomic orbital electron populations 1.70074 1.07385 1.27748 1.50400 1.25754 0.95586 1.02471 0.94028 0.85485 0.79139 0.79324 0.77569 1.18976 1.20865 1.20423 1.21295 0.93295 0.90642 1.51600 0.91725 1.20432 0.94184 0.91906 0.93168 1.23365 0.94452 0.92587 0.90964 1.50159 1.42008 1.04927 1.40078 1.17648 0.81608 0.80966 0.81411 1.90604 1.58419 1.40862 1.59028 1.20159 1.06788 0.94632 1.05528 1.22496 1.00690 0.98874 1.00072 1.22247 1.04191 0.81722 1.03950 1.41397 1.32682 1.08359 1.30617 0.72720 1.19309 0.92978 0.93875 0.92259 1.20672 1.07410 0.85714 1.00342 1.23173 0.94970 0.97475 1.03287 1.23097 0.97374 1.01152 0.98091 1.23453 0.99197 0.76928 1.00160 0.92638 0.94785 0.92141 0.90091 0.84047 0.76967 0.87323 0.86867 0.86594 0.87548 0.88049 0.90788 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.12 13.27 21.45 0.28 -50.84 16 2 C 0.02 1.15 5.46 84.66 0.46 1.61 16 3 Si 0.96 41.63 29.54 68.60 2.03 43.66 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.53 -27.98 8.77 25.60 0.22 -27.76 16 8 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 9 C 0.02 1.13 3.62 -10.88 -0.04 1.09 16 10 C 0.11 4.96 8.39 86.48 0.73 5.68 16 11 N -0.64 -29.38 3.61 -840.89 -3.03 -32.41 16 12 C 0.59 26.88 8.04 86.61 0.70 27.57 16 13 O -0.60 -29.74 15.62 -4.13 -0.06 -29.81 16 14 C -0.26 -9.88 6.28 -19.04 -0.12 -10.00 16 15 C -0.20 -6.40 10.04 23.62 0.24 -6.16 16 16 C 0.01 0.14 11.89 83.12 0.99 1.13 16 17 N -0.53 -10.85 5.80 -182.72 -1.06 -11.91 16 18 H 0.43 4.98 7.84 -92.71 -0.73 4.25 16 19 C 0.14 3.99 6.69 41.78 0.28 4.26 16 20 C -0.12 -3.24 5.61 -11.53 -0.06 -3.31 16 21 C -0.15 -2.42 10.13 30.59 0.31 -2.11 16 22 C -0.16 -3.10 10.24 30.60 0.31 -2.79 16 23 C 0.12 5.71 6.79 86.48 0.59 6.29 16 24 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 25 H 0.03 1.90 8.13 -2.39 -0.02 1.88 16 26 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.08 3.51 8.09 -2.39 -0.02 3.49 16 28 H 0.14 4.83 5.42 -2.91 -0.02 4.81 16 29 H 0.21 2.73 8.06 -2.91 -0.02 2.70 16 30 H 0.11 3.67 6.65 -2.39 -0.02 3.65 16 31 H 0.11 1.20 7.08 -2.39 -0.02 1.18 16 32 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 3.32 8.09 -2.39 -0.02 3.30 16 36 H 0.07 3.01 6.22 -2.39 -0.01 2.99 16 Total: -1.00 -69.30 305.37 3.13 -66.17 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.38 Total: 19.62 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 4.60 Total: -4.48 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -3.81 Total: -95.16 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.06 Total: -29.81 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -69.30 3.13 -66.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598024442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.037 kcal (2) G-P(sol) polarization free energy of solvation -69.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds