Wall clock time and date at job start Mon Mar 30 2020 04:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86799 * 119.99452 * 2 1 4 4 H 1.48500 * 109.47342 * 270.00036 * 3 2 1 5 5 H 1.48500 * 109.47426 * 30.00483 * 3 2 1 6 6 H 1.48505 * 109.46571 * 150.00196 * 3 2 1 7 7 C 1.40044 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00066 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99860 * 5.00846 * 9 7 2 11 11 N 1.34767 * 119.99986 * 185.00427 * 9 7 2 12 12 C 1.46928 * 120.63103 * 354.74082 * 11 9 7 13 13 C 1.53170 * 108.76646 * 233.62564 * 12 11 9 14 14 C 1.53045 * 109.33032 * 305.35643 * 13 12 11 15 15 C 1.53039 * 109.52303 * 61.37202 * 14 13 12 16 16 H 1.08991 * 109.49958 * 58.59443 * 15 14 13 17 17 C 1.50703 * 109.49169 * 178.65993 * 15 14 13 18 18 C 1.38676 * 120.41352 * 239.71672 * 17 15 14 19 19 C 1.38637 * 118.41622 * 179.78447 * 18 17 15 20 20 C 1.38224 * 119.16068 * 0.51493 * 19 18 17 21 21 N 1.31852 * 120.76325 * 359.72405 * 20 19 18 22 22 C 1.31889 * 121.72940 * 0.02562 * 21 20 19 23 23 C 1.46931 * 120.62929 * 174.75945 * 11 9 7 24 24 H 0.96994 * 120.00113 * 359.97438 * 1 2 3 25 25 H 1.08989 * 109.58558 * 353.41514 * 12 11 9 26 26 H 1.08999 * 109.58754 * 113.70163 * 12 11 9 27 27 H 1.09005 * 109.47704 * 185.40508 * 13 12 11 28 28 H 1.08997 * 109.49875 * 65.31709 * 13 12 11 29 29 H 1.09000 * 109.45665 * 301.35632 * 14 13 12 30 30 H 1.08994 * 109.45872 * 181.38372 * 14 13 12 31 31 H 1.08001 * 120.79333 * 0.03004 * 18 17 15 32 32 H 1.07998 * 120.41629 * 180.26608 * 19 18 17 33 33 H 1.07998 * 119.61970 * 179.70610 * 20 19 18 34 34 H 1.07998 * 119.61892 * 179.97438 * 22 21 20 35 35 H 1.08995 * 109.58849 * 6.58441 * 23 11 9 36 36 H 1.09000 * 109.58367 * 246.15672 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0466 -1.4001 5 1 1.4381 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0071 -1.2128 -0.0005 8 1 3.0871 -1.2128 -0.0010 9 6 1.2753 -2.4805 -0.0017 10 8 0.0619 -2.4825 -0.0942 11 7 1.9453 -3.6454 0.0996 12 6 3.4144 -3.6668 0.0962 13 6 3.8906 -4.6341 -0.9917 14 6 3.2428 -6.0031 -0.7713 15 6 1.7216 -5.8716 -0.8743 16 1 1.4561 -5.4757 -1.8544 17 6 1.0862 -7.2257 -0.6898 18 6 0.2990 -7.7741 -1.6911 19 6 -0.2616 -9.0242 -1.4794 20 6 -0.0278 -9.6731 -0.2816 21 7 0.7223 -9.1189 0.6505 22 6 1.2755 -7.9336 0.4817 23 6 1.2204 -4.9183 0.2152 24 1 -0.4850 0.8400 0.0004 25 1 3.7938 -2.6666 -0.1125 26 1 3.7772 -3.9998 1.0685 27 1 4.9750 -4.7324 -0.9414 28 1 3.6046 -4.2498 -1.9708 29 1 3.5091 -6.3757 0.2178 30 1 3.5993 -6.6999 -1.5299 31 1 0.1299 -7.2417 -2.6155 32 1 -0.8765 -9.4835 -2.2392 33 1 -0.4648 -10.6452 -0.1069 34 1 1.8835 -7.5114 1.2681 35 1 0.1524 -4.7437 0.0850 36 1 1.4044 -5.3557 1.1964 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601659200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:18 Heat of formation + Delta-G solvation = -9.417125 kcal Electronic energy + Delta-G solvation = -19212.948461 eV Core-core repulsion = 16275.489522 eV Total energy + Delta-G solvation = -2937.458939 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32793 -38.45455 -35.98185 -33.31279 -32.58943 -32.00396 -31.07072 -29.14533 -26.46148 -24.32561 -23.83919 -23.42244 -21.55717 -20.28501 -18.84349 -17.15350 -16.52695 -16.16639 -15.75526 -15.06489 -14.44712 -14.32193 -13.98463 -13.84309 -13.70607 -13.17708 -13.04320 -12.99538 -12.53511 -12.22384 -11.64067 -11.58510 -11.22310 -11.03186 -10.91770 -10.65616 -10.49497 -10.25687 -10.19882 -9.85147 -9.70433 -9.36694 -8.90371 -8.84416 -7.60657 -7.23978 -6.22070 -4.67120 1.15358 1.32866 3.12013 3.19124 3.22049 3.84791 4.06046 4.39024 4.53355 4.55290 4.82200 4.90425 5.01742 5.09059 5.22606 5.23737 5.38213 5.55759 5.70162 5.73644 5.78898 5.87725 5.96041 6.06961 6.12168 6.19040 6.23199 6.40689 6.52150 6.53958 6.56564 6.74357 6.77652 7.43497 7.59769 8.00444 8.11171 8.32561 8.99853 9.40801 10.55079 10.73605 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036600 B = 0.004811 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.839562 B = 5818.233585 C = 6237.258951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.559 3.441 10 O -0.578 6.578 11 N -0.641 5.641 12 C 0.120 3.880 13 C -0.135 4.135 14 C -0.104 4.104 15 C -0.061 4.061 16 H 0.081 0.919 17 C -0.112 4.112 18 C -0.074 4.074 19 C -0.172 4.172 20 C 0.083 3.917 21 N -0.485 5.485 22 C 0.102 3.898 23 C 0.131 3.869 24 H 0.268 0.732 25 H 0.093 0.907 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.084 0.916 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 -13.283 -2.808 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.461 6.461 11 N -0.379 5.379 12 C -0.004 4.004 13 C -0.173 4.173 14 C -0.142 4.142 15 C -0.082 4.082 16 H 0.099 0.901 17 C -0.115 4.115 18 C -0.100 4.100 19 C -0.192 4.192 20 C -0.074 4.074 21 N -0.194 5.194 22 C -0.055 4.055 23 C 0.007 3.993 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.102 0.898 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.629 -13.597 -2.056 14.510 hybrid contribution 0.321 1.151 -0.894 1.493 sum 4.950 -12.446 -2.950 13.715 Atomic orbital electron populations 1.70017 1.07083 1.27323 1.35233 1.25734 0.94607 1.00312 0.92576 0.86393 0.80196 0.81467 0.78852 1.19729 1.20448 1.18844 1.20984 0.93591 0.89208 1.54281 0.90853 1.18267 0.86912 0.82221 0.76103 1.90593 1.14426 1.86094 1.54944 1.48188 1.04763 1.05527 1.79434 1.21434 0.82460 1.00331 0.96206 1.21959 0.99284 0.95407 1.00699 1.21524 0.93761 0.97448 1.01455 1.20599 0.95162 0.90596 1.01813 0.90053 1.20961 0.97965 0.97453 0.95088 1.21581 0.94623 0.94798 0.98986 1.22111 1.01649 0.96216 0.99220 1.22685 0.95313 0.99636 0.89721 1.67676 1.08339 1.11415 1.31944 1.22636 0.96756 0.90081 0.96000 1.21135 0.98655 0.84679 0.94853 0.92080 0.88898 0.93932 0.91708 0.91688 0.91989 0.92562 0.84911 0.85051 0.83153 0.82884 0.89766 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.83 11.84 55.55 0.66 -22.17 16 2 C 0.09 2.41 5.50 -17.36 -0.10 2.31 16 3 Si 0.91 19.79 29.56 -169.99 -5.02 14.77 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.54 -15.01 8.86 -35.63 -0.32 -15.33 16 8 H 0.07 1.83 5.69 -52.48 -0.30 1.53 16 9 C 0.56 15.73 7.62 -12.99 -0.10 15.64 16 10 O -0.58 -18.60 14.45 5.20 0.08 -18.53 16 11 N -0.64 -14.29 2.97 -174.44 -0.52 -14.81 16 12 C 0.12 2.15 6.31 -3.72 -0.02 2.13 16 13 C -0.13 -1.95 6.08 -26.62 -0.16 -2.12 16 14 C -0.10 -1.40 4.97 -26.69 -0.13 -1.54 16 15 C -0.06 -0.95 2.53 -91.65 -0.23 -1.18 16 16 H 0.08 1.35 7.93 -51.93 -0.41 0.94 16 17 C -0.11 -1.57 4.79 -104.48 -0.50 -2.07 16 18 C -0.07 -0.93 9.81 -39.27 -0.39 -1.32 16 19 C -0.17 -1.90 10.11 -39.44 -0.40 -2.30 16 20 C 0.08 0.98 11.18 -17.55 -0.20 0.79 16 21 N -0.49 -6.86 10.36 -13.26 -0.14 -7.00 16 22 C 0.10 1.43 9.86 -17.55 -0.17 1.26 16 23 C 0.13 2.54 5.62 -3.71 -0.02 2.52 16 24 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 25 H 0.09 1.76 5.37 -51.93 -0.28 1.48 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.78 7.46 -51.93 -0.39 0.40 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.13 1.50 8.00 -52.49 -0.42 1.08 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.15 1.97 7.11 -52.49 -0.37 1.60 16 35 H 0.08 1.89 6.99 -51.93 -0.36 1.53 16 36 H 0.04 0.78 7.25 -51.93 -0.38 0.41 16 LS Contribution 296.53 15.07 4.47 4.47 Total: -1.00 -33.96 296.53 -7.79 -41.76 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.58 Total: 2.72 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.73 Total: -1.21 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.00 Total: -43.98 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.08 Total: -18.53 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.96 -7.79 -41.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601659200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.341 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds