Wall clock time and date at job start Mon Mar 30 2020 04:13:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30682 * 1
3 3 Si 1.86799 * 119.99452 * 2 1
4 4 H 1.48500 * 109.47342 * 270.00036 * 3 2 1
5 5 H 1.48500 * 109.47426 * 30.00483 * 3 2 1
6 6 H 1.48505 * 109.46571 * 150.00196 * 3 2 1
7 7 C 1.40044 * 120.00196 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00086 * 179.97438 * 7 2 1
9 9 C 1.46376 * 120.00066 * 0.02562 * 7 2 1
10 10 O 1.21689 * 119.99860 * 5.00846 * 9 7 2
11 11 N 1.34767 * 119.99986 * 185.00427 * 9 7 2
12 12 C 1.46928 * 120.63103 * 354.74082 * 11 9 7
13 13 C 1.53170 * 108.76646 * 233.62564 * 12 11 9
14 14 C 1.53045 * 109.33032 * 305.35643 * 13 12 11
15 15 C 1.53039 * 109.52303 * 61.37202 * 14 13 12
16 16 H 1.08991 * 109.49958 * 58.59443 * 15 14 13
17 17 C 1.50703 * 109.49169 * 178.65993 * 15 14 13
18 18 C 1.38676 * 120.41352 * 239.71672 * 17 15 14
19 19 C 1.38637 * 118.41622 * 179.78447 * 18 17 15
20 20 C 1.38224 * 119.16068 * 0.51493 * 19 18 17
21 21 N 1.31852 * 120.76325 * 359.72405 * 20 19 18
22 22 C 1.31889 * 121.72940 * 0.02562 * 21 20 19
23 23 C 1.46931 * 120.62929 * 174.75945 * 11 9 7
24 24 H 0.96994 * 120.00113 * 359.97438 * 1 2 3
25 25 H 1.08989 * 109.58558 * 353.41514 * 12 11 9
26 26 H 1.08999 * 109.58754 * 113.70163 * 12 11 9
27 27 H 1.09005 * 109.47704 * 185.40508 * 13 12 11
28 28 H 1.08997 * 109.49875 * 65.31709 * 13 12 11
29 29 H 1.09000 * 109.45665 * 301.35632 * 14 13 12
30 30 H 1.08994 * 109.45872 * 181.38372 * 14 13 12
31 31 H 1.08001 * 120.79333 * 0.03004 * 18 17 15
32 32 H 1.07998 * 120.41629 * 180.26608 * 19 18 17
33 33 H 1.07998 * 119.61970 * 179.70610 * 20 19 18
34 34 H 1.07998 * 119.61892 * 179.97438 * 22 21 20
35 35 H 1.08995 * 109.58849 * 6.58441 * 23 11 9
36 36 H 1.09000 * 109.58367 * 246.15672 * 23 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3068 0.0000 0.0000
3 14 2.2407 1.6178 0.0000
4 1 2.4881 2.0466 -1.4001
5 1 1.4381 2.6527 0.7001
6 1 3.5383 1.4402 0.7000
7 6 2.0071 -1.2128 -0.0005
8 1 3.0871 -1.2128 -0.0010
9 6 1.2753 -2.4805 -0.0017
10 8 0.0619 -2.4825 -0.0942
11 7 1.9453 -3.6454 0.0996
12 6 3.4144 -3.6668 0.0962
13 6 3.8906 -4.6341 -0.9917
14 6 3.2428 -6.0031 -0.7713
15 6 1.7216 -5.8716 -0.8743
16 1 1.4561 -5.4757 -1.8544
17 6 1.0862 -7.2257 -0.6898
18 6 0.2990 -7.7741 -1.6911
19 6 -0.2616 -9.0242 -1.4794
20 6 -0.0278 -9.6731 -0.2816
21 7 0.7223 -9.1189 0.6505
22 6 1.2755 -7.9336 0.4817
23 6 1.2204 -4.9183 0.2152
24 1 -0.4850 0.8400 0.0004
25 1 3.7938 -2.6666 -0.1125
26 1 3.7772 -3.9998 1.0685
27 1 4.9750 -4.7324 -0.9414
28 1 3.6046 -4.2498 -1.9708
29 1 3.5091 -6.3757 0.2178
30 1 3.5993 -6.6999 -1.5299
31 1 0.1299 -7.2417 -2.6155
32 1 -0.8765 -9.4835 -2.2392
33 1 -0.4648 -10.6452 -0.1069
34 1 1.8835 -7.5114 1.2681
35 1 0.1524 -4.7437 0.0850
36 1 1.4044 -5.3557 1.1964
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601659200.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:18
Heat of formation + Delta-G solvation = -9.417125 kcal
Electronic energy + Delta-G solvation = -19212.948461 eV
Core-core repulsion = 16275.489522 eV
Total energy + Delta-G solvation = -2937.458939 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.32793 -38.45455 -35.98185 -33.31279 -32.58943 -32.00396 -31.07072 -29.14533
-26.46148 -24.32561 -23.83919 -23.42244 -21.55717 -20.28501 -18.84349 -17.15350
-16.52695 -16.16639 -15.75526 -15.06489 -14.44712 -14.32193 -13.98463 -13.84309
-13.70607 -13.17708 -13.04320 -12.99538 -12.53511 -12.22384 -11.64067 -11.58510
-11.22310 -11.03186 -10.91770 -10.65616 -10.49497 -10.25687 -10.19882 -9.85147
-9.70433 -9.36694 -8.90371 -8.84416 -7.60657 -7.23978 -6.22070 -4.67120
1.15358 1.32866 3.12013 3.19124 3.22049 3.84791 4.06046 4.39024
4.53355 4.55290 4.82200 4.90425 5.01742 5.09059 5.22606 5.23737
5.38213 5.55759 5.70162 5.73644 5.78898 5.87725 5.96041 6.06961
6.12168 6.19040 6.23199 6.40689 6.52150 6.53958 6.56564 6.74357
6.77652 7.43497 7.59769 8.00444 8.11171 8.32561 8.99853 9.40801
10.55079 10.73605
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.036600 B = 0.004811 C = 0.004488
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 764.839562 B = 5818.233585 C = 6237.258951
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.768 5.768
2 C 0.087 3.913
3 Si 0.906 3.094
4 H -0.272 1.272
5 H -0.279 1.279
6 H -0.264 1.264
7 C -0.544 4.544
8 H 0.074 0.926
9 C 0.559 3.441
10 O -0.578 6.578
11 N -0.641 5.641
12 C 0.120 3.880
13 C -0.135 4.135
14 C -0.104 4.104
15 C -0.061 4.061
16 H 0.081 0.919
17 C -0.112 4.112
18 C -0.074 4.074
19 C -0.172 4.172
20 C 0.083 3.917
21 N -0.485 5.485
22 C 0.102 3.898
23 C 0.131 3.869
24 H 0.268 0.732
25 H 0.093 0.907
26 H 0.042 0.958
27 H 0.064 0.936
28 H 0.064 0.936
29 H 0.061 0.939
30 H 0.056 0.944
31 H 0.133 0.867
32 H 0.132 0.868
33 H 0.151 0.849
34 H 0.154 0.846
35 H 0.084 0.916
36 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.357 -13.283 -2.808 14.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.397 5.397
2 C -0.132 4.132
3 Si 0.731 3.269
4 H -0.197 1.197
5 H -0.204 1.204
6 H -0.188 1.188
7 C -0.581 4.581
8 H 0.091 0.909
9 C 0.365 3.635
10 O -0.461 6.461
11 N -0.379 5.379
12 C -0.004 4.004
13 C -0.173 4.173
14 C -0.142 4.142
15 C -0.082 4.082
16 H 0.099 0.901
17 C -0.115 4.115
18 C -0.100 4.100
19 C -0.192 4.192
20 C -0.074 4.074
21 N -0.194 5.194
22 C -0.055 4.055
23 C 0.007 3.993
24 H 0.079 0.921
25 H 0.111 0.889
26 H 0.061 0.939
27 H 0.083 0.917
28 H 0.083 0.917
29 H 0.080 0.920
30 H 0.074 0.926
31 H 0.151 0.849
32 H 0.149 0.851
33 H 0.168 0.832
34 H 0.171 0.829
35 H 0.102 0.898
36 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 4.629 -13.597 -2.056 14.510
hybrid contribution 0.321 1.151 -0.894 1.493
sum 4.950 -12.446 -2.950 13.715
Atomic orbital electron populations
1.70017 1.07083 1.27323 1.35233 1.25734 0.94607 1.00312 0.92576
0.86393 0.80196 0.81467 0.78852 1.19729 1.20448 1.18844 1.20984
0.93591 0.89208 1.54281 0.90853 1.18267 0.86912 0.82221 0.76103
1.90593 1.14426 1.86094 1.54944 1.48188 1.04763 1.05527 1.79434
1.21434 0.82460 1.00331 0.96206 1.21959 0.99284 0.95407 1.00699
1.21524 0.93761 0.97448 1.01455 1.20599 0.95162 0.90596 1.01813
0.90053 1.20961 0.97965 0.97453 0.95088 1.21581 0.94623 0.94798
0.98986 1.22111 1.01649 0.96216 0.99220 1.22685 0.95313 0.99636
0.89721 1.67676 1.08339 1.11415 1.31944 1.22636 0.96756 0.90081
0.96000 1.21135 0.98655 0.84679 0.94853 0.92080 0.88898 0.93932
0.91708 0.91688 0.91989 0.92562 0.84911 0.85051 0.83153 0.82884
0.89766 0.93808
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.77 -22.83 11.84 55.55 0.66 -22.17 16
2 C 0.09 2.41 5.50 -17.36 -0.10 2.31 16
3 Si 0.91 19.79 29.56 -169.99 -5.02 14.77 16
4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16
5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16
7 C -0.54 -15.01 8.86 -35.63 -0.32 -15.33 16
8 H 0.07 1.83 5.69 -52.48 -0.30 1.53 16
9 C 0.56 15.73 7.62 -12.99 -0.10 15.64 16
10 O -0.58 -18.60 14.45 5.20 0.08 -18.53 16
11 N -0.64 -14.29 2.97 -174.44 -0.52 -14.81 16
12 C 0.12 2.15 6.31 -3.72 -0.02 2.13 16
13 C -0.13 -1.95 6.08 -26.62 -0.16 -2.12 16
14 C -0.10 -1.40 4.97 -26.69 -0.13 -1.54 16
15 C -0.06 -0.95 2.53 -91.65 -0.23 -1.18 16
16 H 0.08 1.35 7.93 -51.93 -0.41 0.94 16
17 C -0.11 -1.57 4.79 -104.48 -0.50 -2.07 16
18 C -0.07 -0.93 9.81 -39.27 -0.39 -1.32 16
19 C -0.17 -1.90 10.11 -39.44 -0.40 -2.30 16
20 C 0.08 0.98 11.18 -17.55 -0.20 0.79 16
21 N -0.49 -6.86 10.36 -13.26 -0.14 -7.00 16
22 C 0.10 1.43 9.86 -17.55 -0.17 1.26 16
23 C 0.13 2.54 5.62 -3.71 -0.02 2.52 16
24 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16
25 H 0.09 1.76 5.37 -51.93 -0.28 1.48 16
26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
29 H 0.06 0.78 7.46 -51.93 -0.39 0.40 16
30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
31 H 0.13 1.50 8.00 -52.49 -0.42 1.08 16
32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16
33 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16
34 H 0.15 1.97 7.11 -52.49 -0.37 1.60 16
35 H 0.08 1.89 6.99 -51.93 -0.36 1.53 16
36 H 0.04 0.78 7.25 -51.93 -0.38 0.41 16
LS Contribution 296.53 15.07 4.47 4.47
Total: -1.00 -33.96 296.53 -7.79 -41.76
By element:
Atomic # 1 Polarization: 7.30 SS G_CDS: -4.58 Total: 2.72 kcal
Atomic # 6 Polarization: 1.52 SS G_CDS: -2.73 Total: -1.21 kcal
Atomic # 7 Polarization: -43.98 SS G_CDS: 0.00 Total: -43.98 kcal
Atomic # 8 Polarization: -18.60 SS G_CDS: 0.08 Total: -18.53 kcal
Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal
Total LS contribution 4.47 Total: 4.47 kcal
Total: -33.96 -7.79 -41.76 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601659200.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.341 kcal
(2) G-P(sol) polarization free energy of solvation -33.964 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.623 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.417 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds