Wall clock time and date at job start Mon Mar 30 2020 04:13:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30682 * 1
3 3 Si 1.86799 * 119.99452 * 2 1
4 4 H 1.48500 * 109.47342 * 270.00036 * 3 2 1
5 5 H 1.48500 * 109.47426 * 30.00483 * 3 2 1
6 6 H 1.48505 * 109.46571 * 150.00196 * 3 2 1
7 7 C 1.40044 * 120.00196 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00086 * 179.97438 * 7 2 1
9 9 C 1.46376 * 120.00066 * 0.02562 * 7 2 1
10 10 O 1.21689 * 119.99860 * 5.00846 * 9 7 2
11 11 N 1.34767 * 119.99986 * 185.00427 * 9 7 2
12 12 C 1.46928 * 120.63103 * 354.74082 * 11 9 7
13 13 C 1.53170 * 108.76646 * 233.62564 * 12 11 9
14 14 C 1.53045 * 109.33032 * 305.35643 * 13 12 11
15 15 C 1.53039 * 109.52303 * 61.37202 * 14 13 12
16 16 H 1.08991 * 109.49958 * 58.59443 * 15 14 13
17 17 C 1.50703 * 109.49169 * 178.65993 * 15 14 13
18 18 C 1.38676 * 120.41352 * 239.71672 * 17 15 14
19 19 C 1.38637 * 118.41622 * 179.78447 * 18 17 15
20 20 C 1.38224 * 119.16068 * 0.51493 * 19 18 17
21 21 N 1.31852 * 120.76325 * 359.72405 * 20 19 18
22 22 C 1.31889 * 121.72940 * 0.02562 * 21 20 19
23 23 C 1.46931 * 120.62929 * 174.75945 * 11 9 7
24 24 H 0.96994 * 120.00113 * 359.97438 * 1 2 3
25 25 H 1.08989 * 109.58558 * 353.41514 * 12 11 9
26 26 H 1.08999 * 109.58754 * 113.70163 * 12 11 9
27 27 H 1.09005 * 109.47704 * 185.40508 * 13 12 11
28 28 H 1.08997 * 109.49875 * 65.31709 * 13 12 11
29 29 H 1.09000 * 109.45665 * 301.35632 * 14 13 12
30 30 H 1.08994 * 109.45872 * 181.38372 * 14 13 12
31 31 H 1.08001 * 120.79333 * 0.03004 * 18 17 15
32 32 H 1.07998 * 120.41629 * 180.26608 * 19 18 17
33 33 H 1.07998 * 119.61970 * 179.70610 * 20 19 18
34 34 H 1.07998 * 119.61892 * 179.97438 * 22 21 20
35 35 H 1.08995 * 109.58849 * 6.58441 * 23 11 9
36 36 H 1.09000 * 109.58367 * 246.15672 * 23 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3068 0.0000 0.0000
3 14 2.2407 1.6178 0.0000
4 1 2.4881 2.0466 -1.4001
5 1 1.4381 2.6527 0.7001
6 1 3.5383 1.4402 0.7000
7 6 2.0071 -1.2128 -0.0005
8 1 3.0871 -1.2128 -0.0010
9 6 1.2753 -2.4805 -0.0017
10 8 0.0619 -2.4825 -0.0942
11 7 1.9453 -3.6454 0.0996
12 6 3.4144 -3.6668 0.0962
13 6 3.8906 -4.6341 -0.9917
14 6 3.2428 -6.0031 -0.7713
15 6 1.7216 -5.8716 -0.8743
16 1 1.4561 -5.4757 -1.8544
17 6 1.0862 -7.2257 -0.6898
18 6 0.2990 -7.7741 -1.6911
19 6 -0.2616 -9.0242 -1.4794
20 6 -0.0278 -9.6731 -0.2816
21 7 0.7223 -9.1189 0.6505
22 6 1.2755 -7.9336 0.4817
23 6 1.2204 -4.9183 0.2152
24 1 -0.4850 0.8400 0.0004
25 1 3.7938 -2.6666 -0.1125
26 1 3.7772 -3.9998 1.0685
27 1 4.9750 -4.7324 -0.9414
28 1 3.6046 -4.2498 -1.9708
29 1 3.5091 -6.3757 0.2178
30 1 3.5993 -6.6999 -1.5299
31 1 0.1299 -7.2417 -2.6155
32 1 -0.8765 -9.4835 -2.2392
33 1 -0.4648 -10.6452 -0.1069
34 1 1.8835 -7.5114 1.2681
35 1 0.1524 -4.7437 0.0850
36 1 1.4044 -5.3557 1.1964
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601659200.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:17
Heat of formation + Delta-G solvation = -31.976263 kcal
Electronic energy + Delta-G solvation = -19213.926699 eV
Core-core repulsion = 16275.489522 eV
Total energy + Delta-G solvation = -2938.437177 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.40913 -40.04848 -37.77599 -34.71643 -34.65439 -33.06787 -32.51927 -30.44417
-28.40761 -25.84572 -25.09469 -24.49279 -22.80456 -21.86043 -20.43703 -18.48634
-17.98083 -17.77836 -17.20403 -16.39613 -16.06172 -15.88743 -15.36038 -15.08067
-14.88695 -14.59743 -14.45474 -14.15456 -13.96578 -13.56378 -13.47074 -13.10984
-12.91021 -12.74007 -12.34718 -12.24711 -11.99613 -11.80029 -11.51847 -11.41432
-10.92976 -10.71277 -10.38370 -9.91760 -9.76587 -9.05631 -8.28922 -6.83662
0.17871 0.34091 1.40316 1.41688 1.56946 2.23942 2.45938 2.79890
2.89924 3.49377 3.58592 3.76802 3.81116 3.97498 4.06152 4.10083
4.19542 4.24942 4.37674 4.41851 4.65761 4.68097 4.76169 4.91171
4.93364 5.00604 5.05235 5.10304 5.19038 5.20379 5.39147 5.41494
5.51829 5.76692 5.81005 6.15613 6.40169 6.88263 7.02766 7.43140
8.47035 8.67639
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.036600 B = 0.004811 C = 0.004488
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 764.839562 B = 5818.233585 C = 6237.258951
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.825 5.825
2 C 0.028 3.972
3 Si 0.996 3.004
4 H -0.262 1.262
5 H -0.275 1.275
6 H -0.245 1.245
7 C -0.568 4.568
8 H 0.096 0.904
9 C 0.539 3.461
10 O -0.635 6.635
11 N -0.644 5.644
12 C 0.113 3.887
13 C -0.126 4.126
14 C -0.098 4.098
15 C -0.046 4.046
16 H 0.063 0.937
17 C -0.126 4.126
18 C -0.085 4.085
19 C -0.164 4.164
20 C 0.080 3.920
21 N -0.508 5.508
22 C 0.092 3.908
23 C 0.132 3.868
24 H 0.273 0.727
25 H 0.081 0.919
26 H 0.063 0.937
27 H 0.102 0.898
28 H 0.050 0.950
29 H 0.076 0.924
30 H 0.078 0.922
31 H 0.141 0.859
32 H 0.165 0.835
33 H 0.183 0.817
34 H 0.158 0.842
35 H 0.041 0.959
36 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.579 -14.412 -3.216 16.598
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.454 5.454
2 C -0.187 4.187
3 Si 0.815 3.185
4 H -0.187 1.187
5 H -0.200 1.200
6 H -0.168 1.168
7 C -0.604 4.604
8 H 0.114 0.886
9 C 0.345 3.655
10 O -0.523 6.523
11 N -0.380 5.380
12 C -0.010 4.010
13 C -0.164 4.164
14 C -0.135 4.135
15 C -0.067 4.067
16 H 0.082 0.918
17 C -0.129 4.129
18 C -0.111 4.111
19 C -0.183 4.183
20 C -0.076 4.076
21 N -0.217 5.217
22 C -0.064 4.064
23 C 0.008 3.992
24 H 0.083 0.917
25 H 0.099 0.901
26 H 0.081 0.919
27 H 0.120 0.880
28 H 0.069 0.931
29 H 0.095 0.905
30 H 0.097 0.903
31 H 0.159 0.841
32 H 0.183 0.817
33 H 0.199 0.801
34 H 0.175 0.825
35 H 0.059 0.941
36 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 6.913 -14.782 -2.461 16.503
hybrid contribution -0.426 1.361 -0.760 1.616
sum 6.487 -13.421 -3.221 15.251
Atomic orbital electron populations
1.70205 1.09642 1.28853 1.36740 1.27018 0.95470 1.05023 0.91186
0.85045 0.78921 0.75101 0.79416 1.18654 1.20023 1.16840 1.21531
0.94891 0.89674 1.54338 0.88586 1.18706 0.86551 0.84311 0.75891
1.90538 1.16803 1.87462 1.57485 1.48061 1.06815 1.05033 1.78117
1.21694 0.79531 1.01030 0.98744 1.21900 1.01456 0.94742 0.98322
1.21517 0.91642 0.97292 1.03090 1.20354 0.97023 0.90369 0.98935
0.91839 1.20822 0.99230 0.96788 0.96048 1.21841 0.94389 0.95759
0.99131 1.22459 1.00902 0.95251 0.99714 1.23287 0.94278 1.00671
0.89395 1.67708 1.09310 1.11573 1.33064 1.22701 0.97256 0.90390
0.96058 1.21197 0.96159 0.84483 0.97322 0.91700 0.90120 0.91869
0.88010 0.93111 0.90543 0.90303 0.84107 0.81697 0.80050 0.82480
0.94060 0.92352
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -51.02 11.84 21.84 0.26 -50.76 16
2 C 0.03 1.55 5.50 85.30 0.47 2.02 16
3 Si 1.00 40.71 29.56 68.60 2.03 42.74 16
4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16
5 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16
6 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16
7 C -0.57 -32.03 8.86 24.83 0.22 -31.81 16
8 H 0.10 4.78 5.69 -2.91 -0.02 4.77 16
9 C 0.54 31.76 7.62 86.36 0.66 32.42 16
10 O -0.64 -43.56 14.45 -4.31 -0.06 -43.62 16
11 N -0.64 -29.50 2.97 -824.04 -2.45 -31.95 16
12 C 0.11 3.94 6.31 86.35 0.55 4.48 16
13 C -0.13 -3.37 6.08 30.67 0.19 -3.18 16
14 C -0.10 -2.41 4.97 30.62 0.15 -2.26 16
15 C -0.05 -1.43 2.53 -11.46 -0.03 -1.46 16
16 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16
17 C -0.13 -3.46 4.79 -19.77 -0.09 -3.56 16
18 C -0.09 -2.05 9.81 22.47 0.22 -1.83 16
19 C -0.16 -3.20 10.11 22.36 0.23 -2.98 16
20 C 0.08 1.69 11.18 84.69 0.95 2.64 16
21 N -0.51 -13.57 10.36 -195.85 -2.03 -15.60 16
22 C 0.09 2.49 9.86 84.67 0.84 3.33 16
23 C 0.13 5.32 5.62 86.36 0.48 5.80 16
24 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16
25 H 0.08 3.00 5.37 -2.39 -0.01 2.98 16
26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
27 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16
28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16
29 H 0.08 1.70 7.46 -2.39 -0.02 1.69 16
30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
31 H 0.14 3.07 8.00 -2.91 -0.02 3.05 16
32 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16
33 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16
34 H 0.16 3.91 7.11 -2.91 -0.02 3.89 16
35 H 0.04 1.99 6.99 -2.39 -0.02 1.98 16
36 H 0.06 2.14 7.25 -2.39 -0.02 2.12 16
Total: -1.00 -78.67 296.53 3.65 -75.02
By element:
Atomic # 1 Polarization: 19.49 SS G_CDS: 1.08 Total: 20.58 kcal
Atomic # 6 Polarization: -1.21 SS G_CDS: 4.82 Total: 3.61 kcal
Atomic # 7 Polarization: -94.10 SS G_CDS: -4.22 Total: -98.32 kcal
Atomic # 8 Polarization: -43.56 SS G_CDS: -0.06 Total: -43.62 kcal
Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal
Total: -78.67 3.65 -75.02 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601659200.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.044 kcal
(2) G-P(sol) polarization free energy of solvation -78.670 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.626 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.020 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.976 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds