Wall clock time and date at job start Mon Mar 30 2020 04:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86799 * 119.99452 * 2 1 4 4 H 1.48500 * 109.47342 * 270.00036 * 3 2 1 5 5 H 1.48500 * 109.47426 * 30.00483 * 3 2 1 6 6 H 1.48505 * 109.46571 * 150.00196 * 3 2 1 7 7 C 1.40044 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00066 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99860 * 5.00846 * 9 7 2 11 11 N 1.34767 * 119.99986 * 185.00427 * 9 7 2 12 12 C 1.46928 * 120.63103 * 354.74082 * 11 9 7 13 13 C 1.53170 * 108.76646 * 233.62564 * 12 11 9 14 14 C 1.53045 * 109.33032 * 305.35643 * 13 12 11 15 15 C 1.53039 * 109.52303 * 61.37202 * 14 13 12 16 16 H 1.08991 * 109.49958 * 58.59443 * 15 14 13 17 17 C 1.50703 * 109.49169 * 178.65993 * 15 14 13 18 18 C 1.38676 * 120.41352 * 239.71672 * 17 15 14 19 19 C 1.38637 * 118.41622 * 179.78447 * 18 17 15 20 20 C 1.38224 * 119.16068 * 0.51493 * 19 18 17 21 21 N 1.31852 * 120.76325 * 359.72405 * 20 19 18 22 22 C 1.31889 * 121.72940 * 0.02562 * 21 20 19 23 23 C 1.46931 * 120.62929 * 174.75945 * 11 9 7 24 24 H 0.96994 * 120.00113 * 359.97438 * 1 2 3 25 25 H 1.08989 * 109.58558 * 353.41514 * 12 11 9 26 26 H 1.08999 * 109.58754 * 113.70163 * 12 11 9 27 27 H 1.09005 * 109.47704 * 185.40508 * 13 12 11 28 28 H 1.08997 * 109.49875 * 65.31709 * 13 12 11 29 29 H 1.09000 * 109.45665 * 301.35632 * 14 13 12 30 30 H 1.08994 * 109.45872 * 181.38372 * 14 13 12 31 31 H 1.08001 * 120.79333 * 0.03004 * 18 17 15 32 32 H 1.07998 * 120.41629 * 180.26608 * 19 18 17 33 33 H 1.07998 * 119.61970 * 179.70610 * 20 19 18 34 34 H 1.07998 * 119.61892 * 179.97438 * 22 21 20 35 35 H 1.08995 * 109.58849 * 6.58441 * 23 11 9 36 36 H 1.09000 * 109.58367 * 246.15672 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0466 -1.4001 5 1 1.4381 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0071 -1.2128 -0.0005 8 1 3.0871 -1.2128 -0.0010 9 6 1.2753 -2.4805 -0.0017 10 8 0.0619 -2.4825 -0.0942 11 7 1.9453 -3.6454 0.0996 12 6 3.4144 -3.6668 0.0962 13 6 3.8906 -4.6341 -0.9917 14 6 3.2428 -6.0031 -0.7713 15 6 1.7216 -5.8716 -0.8743 16 1 1.4561 -5.4757 -1.8544 17 6 1.0862 -7.2257 -0.6898 18 6 0.2990 -7.7741 -1.6911 19 6 -0.2616 -9.0242 -1.4794 20 6 -0.0278 -9.6731 -0.2816 21 7 0.7223 -9.1189 0.6505 22 6 1.2755 -7.9336 0.4817 23 6 1.2204 -4.9183 0.2152 24 1 -0.4850 0.8400 0.0004 25 1 3.7938 -2.6666 -0.1125 26 1 3.7772 -3.9998 1.0685 27 1 4.9750 -4.7324 -0.9414 28 1 3.6046 -4.2498 -1.9708 29 1 3.5091 -6.3757 0.2178 30 1 3.5993 -6.6999 -1.5299 31 1 0.1299 -7.2417 -2.6155 32 1 -0.8765 -9.4835 -2.2392 33 1 -0.4648 -10.6452 -0.1069 34 1 1.8835 -7.5114 1.2681 35 1 0.1524 -4.7437 0.0850 36 1 1.4044 -5.3557 1.1964 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601659200.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:17 Heat of formation + Delta-G solvation = -31.976263 kcal Electronic energy + Delta-G solvation = -19213.926699 eV Core-core repulsion = 16275.489522 eV Total energy + Delta-G solvation = -2938.437177 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40913 -40.04848 -37.77599 -34.71643 -34.65439 -33.06787 -32.51927 -30.44417 -28.40761 -25.84572 -25.09469 -24.49279 -22.80456 -21.86043 -20.43703 -18.48634 -17.98083 -17.77836 -17.20403 -16.39613 -16.06172 -15.88743 -15.36038 -15.08067 -14.88695 -14.59743 -14.45474 -14.15456 -13.96578 -13.56378 -13.47074 -13.10984 -12.91021 -12.74007 -12.34718 -12.24711 -11.99613 -11.80029 -11.51847 -11.41432 -10.92976 -10.71277 -10.38370 -9.91760 -9.76587 -9.05631 -8.28922 -6.83662 0.17871 0.34091 1.40316 1.41688 1.56946 2.23942 2.45938 2.79890 2.89924 3.49377 3.58592 3.76802 3.81116 3.97498 4.06152 4.10083 4.19542 4.24942 4.37674 4.41851 4.65761 4.68097 4.76169 4.91171 4.93364 5.00604 5.05235 5.10304 5.19038 5.20379 5.39147 5.41494 5.51829 5.76692 5.81005 6.15613 6.40169 6.88263 7.02766 7.43140 8.47035 8.67639 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.036600 B = 0.004811 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.839562 B = 5818.233585 C = 6237.258951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.539 3.461 10 O -0.635 6.635 11 N -0.644 5.644 12 C 0.113 3.887 13 C -0.126 4.126 14 C -0.098 4.098 15 C -0.046 4.046 16 H 0.063 0.937 17 C -0.126 4.126 18 C -0.085 4.085 19 C -0.164 4.164 20 C 0.080 3.920 21 N -0.508 5.508 22 C 0.092 3.908 23 C 0.132 3.868 24 H 0.273 0.727 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.165 0.835 33 H 0.183 0.817 34 H 0.158 0.842 35 H 0.041 0.959 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.579 -14.412 -3.216 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.168 1.168 7 C -0.604 4.604 8 H 0.114 0.886 9 C 0.345 3.655 10 O -0.523 6.523 11 N -0.380 5.380 12 C -0.010 4.010 13 C -0.164 4.164 14 C -0.135 4.135 15 C -0.067 4.067 16 H 0.082 0.918 17 C -0.129 4.129 18 C -0.111 4.111 19 C -0.183 4.183 20 C -0.076 4.076 21 N -0.217 5.217 22 C -0.064 4.064 23 C 0.008 3.992 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.183 0.817 33 H 0.199 0.801 34 H 0.175 0.825 35 H 0.059 0.941 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.913 -14.782 -2.461 16.503 hybrid contribution -0.426 1.361 -0.760 1.616 sum 6.487 -13.421 -3.221 15.251 Atomic orbital electron populations 1.70205 1.09642 1.28853 1.36740 1.27018 0.95470 1.05023 0.91186 0.85045 0.78921 0.75101 0.79416 1.18654 1.20023 1.16840 1.21531 0.94891 0.89674 1.54338 0.88586 1.18706 0.86551 0.84311 0.75891 1.90538 1.16803 1.87462 1.57485 1.48061 1.06815 1.05033 1.78117 1.21694 0.79531 1.01030 0.98744 1.21900 1.01456 0.94742 0.98322 1.21517 0.91642 0.97292 1.03090 1.20354 0.97023 0.90369 0.98935 0.91839 1.20822 0.99230 0.96788 0.96048 1.21841 0.94389 0.95759 0.99131 1.22459 1.00902 0.95251 0.99714 1.23287 0.94278 1.00671 0.89395 1.67708 1.09310 1.11573 1.33064 1.22701 0.97256 0.90390 0.96058 1.21197 0.96159 0.84483 0.97322 0.91700 0.90120 0.91869 0.88010 0.93111 0.90543 0.90303 0.84107 0.81697 0.80050 0.82480 0.94060 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.02 11.84 21.84 0.26 -50.76 16 2 C 0.03 1.55 5.50 85.30 0.47 2.02 16 3 Si 1.00 40.71 29.56 68.60 2.03 42.74 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.57 -32.03 8.86 24.83 0.22 -31.81 16 8 H 0.10 4.78 5.69 -2.91 -0.02 4.77 16 9 C 0.54 31.76 7.62 86.36 0.66 32.42 16 10 O -0.64 -43.56 14.45 -4.31 -0.06 -43.62 16 11 N -0.64 -29.50 2.97 -824.04 -2.45 -31.95 16 12 C 0.11 3.94 6.31 86.35 0.55 4.48 16 13 C -0.13 -3.37 6.08 30.67 0.19 -3.18 16 14 C -0.10 -2.41 4.97 30.62 0.15 -2.26 16 15 C -0.05 -1.43 2.53 -11.46 -0.03 -1.46 16 16 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 17 C -0.13 -3.46 4.79 -19.77 -0.09 -3.56 16 18 C -0.09 -2.05 9.81 22.47 0.22 -1.83 16 19 C -0.16 -3.20 10.11 22.36 0.23 -2.98 16 20 C 0.08 1.69 11.18 84.69 0.95 2.64 16 21 N -0.51 -13.57 10.36 -195.85 -2.03 -15.60 16 22 C 0.09 2.49 9.86 84.67 0.84 3.33 16 23 C 0.13 5.32 5.62 86.36 0.48 5.80 16 24 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 25 H 0.08 3.00 5.37 -2.39 -0.01 2.98 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.70 7.46 -2.39 -0.02 1.69 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.14 3.07 8.00 -2.91 -0.02 3.05 16 32 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.16 3.91 7.11 -2.91 -0.02 3.89 16 35 H 0.04 1.99 6.99 -2.39 -0.02 1.98 16 36 H 0.06 2.14 7.25 -2.39 -0.02 2.12 16 Total: -1.00 -78.67 296.53 3.65 -75.02 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 1.08 Total: 20.58 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 4.82 Total: 3.61 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -4.22 Total: -98.32 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -0.06 Total: -43.62 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -78.67 3.65 -75.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601659200.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.044 kcal (2) G-P(sol) polarization free energy of solvation -78.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds