Wall clock time and date at job start Mon Mar 30 2020 05:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 111.00285 * 2 1 4 4 H 1.09003 * 109.46679 * 35.00422 * 3 2 1 5 5 C 1.52994 * 109.47242 * 275.00804 * 3 2 1 6 6 C 1.50689 * 109.47127 * 155.00144 * 3 2 1 7 7 C 1.38169 * 119.56816 * 205.00198 * 6 3 2 8 8 C 1.38839 * 119.33671 * 179.97438 * 7 6 3 9 9 C 1.38353 * 118.51022 * 0.02562 * 8 7 6 10 10 C 1.39187 * 119.08681 * 359.97438 * 9 8 7 11 11 N 1.38841 * 119.70555 * 179.97438 * 10 9 8 12 12 C 1.36913 * 120.00304 * 5.00477 * 11 10 9 13 13 H 1.07995 * 120.00291 * 20.88566 * 12 11 10 14 14 C 1.38820 * 120.00098 * 200.88063 * 12 11 10 15 15 N 1.31570 * 119.99551 * 17.79427 * 14 12 11 16 16 Si 1.86794 * 120.00122 * 197.79718 * 14 12 11 17 17 H 1.48506 * 109.47351 * 85.86008 * 16 14 12 18 18 H 1.48501 * 109.47221 * 205.86104 * 16 14 12 19 19 H 1.48495 * 109.47081 * 325.86198 * 16 14 12 20 20 C 1.46506 * 119.99889 * 185.00078 * 11 10 9 21 21 C 1.47199 * 109.46876 * 83.91956 * 20 11 10 22 22 N 5.46547 * 147.81524 * 230.12704 * 2 1 3 23 23 N 1.31866 * 119.57129 * 24.72766 * 6 3 2 24 24 H 1.08996 * 109.47137 * 59.99059 * 1 2 3 25 25 H 1.09004 * 109.46709 * 300.00098 * 1 2 3 26 26 H 1.08991 * 109.47580 * 179.97438 * 1 2 3 27 27 H 1.00904 * 110.99666 * 236.05428 * 2 1 3 28 28 H 1.08998 * 109.47865 * 59.99402 * 5 3 2 29 29 H 1.08996 * 109.47327 * 180.02562 * 5 3 2 30 30 H 1.09003 * 109.46972 * 299.99439 * 5 3 2 31 31 H 1.07996 * 120.33192 * 0.02562 * 7 6 3 32 32 H 1.08003 * 120.75110 * 180.02562 * 8 7 6 33 33 H 1.07995 * 120.45878 * 179.97438 * 9 8 7 34 34 H 0.97006 * 119.99185 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.47370 * 203.92076 * 20 11 10 36 36 H 1.08999 * 109.47210 * 323.92705 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3399 2.0123 0.5895 5 6 2.0608 1.8927 -1.4369 6 6 3.3776 1.3789 0.6004 7 6 3.8635 2.5357 1.1790 8 6 5.1373 2.5370 1.7312 9 6 5.8800 1.3708 1.6811 10 6 5.3276 0.2420 1.0827 11 7 6.0617 -0.9350 1.0249 12 6 7.2803 -1.0129 1.6442 13 1 7.5280 -0.3233 2.4376 14 6 8.1976 -1.9784 1.2524 15 7 8.0640 -2.5791 0.0895 16 14 9.6213 -2.4248 2.3762 17 1 9.1826 -3.4638 3.3423 18 1 10.7481 -2.9490 1.5633 19 1 10.0652 -1.2165 3.1165 20 6 5.5324 -2.0937 0.3014 21 6 5.8495 -1.9649 -1.1303 22 7 6.0946 -1.8663 -2.2342 23 7 4.1056 0.2797 0.5716 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8306 -0.5260 -0.7815 28 1 1.0611 1.8873 -1.8713 29 1 2.4519 2.9101 -1.4370 30 1 2.7165 1.2518 -2.0265 31 1 3.2581 3.4297 1.2021 32 1 5.5396 3.4284 2.1895 33 1 6.8745 1.3367 2.1006 34 1 8.7052 -3.2536 -0.1844 35 1 5.9850 -3.0046 0.6932 36 1 4.4512 -2.1403 0.4312 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690980527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:12 Heat of formation + Delta-G solvation = 85.396674 kcal Electronic energy + Delta-G solvation = -19360.125577 eV Core-core repulsion = 16459.070823 eV Total energy + Delta-G solvation = -2901.054753 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.44709 -37.15982 -35.90211 -34.49313 -32.23074 -31.43853 -30.41350 -28.66694 -27.09954 -25.07426 -24.44487 -22.96492 -21.06930 -20.40906 -17.68692 -17.11408 -16.15095 -15.55092 -15.30461 -14.83278 -14.50183 -14.12385 -13.95801 -13.58643 -13.25152 -12.89287 -12.51233 -12.43630 -12.21789 -12.03080 -11.90295 -11.54586 -11.42333 -11.23725 -11.19565 -11.12949 -10.75177 -10.52482 -10.43330 -10.17245 -9.70179 -8.89857 -8.56268 -8.35570 -8.05424 -6.97676 -6.54368 -3.95345 2.25649 2.43441 3.11186 3.14805 3.17923 3.75197 4.07896 4.28934 4.46683 4.65226 4.80086 4.95870 5.14004 5.34337 5.39261 5.53227 5.57042 5.63093 5.67504 5.85381 5.94415 5.97219 6.11185 6.27933 6.32477 6.36624 6.57629 6.64670 6.72931 6.99972 7.19915 7.25847 7.33603 7.55414 7.68431 7.91414 8.37222 8.96249 8.99557 9.09663 9.60114 10.48097 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.006448 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.899725 B = 4341.310883 C = 4966.782549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.672 5.672 3 C 0.139 3.861 4 H 0.085 0.915 5 C -0.175 4.175 6 C 0.192 3.808 7 C -0.288 4.288 8 C -0.037 4.037 9 C -0.247 4.247 10 C 0.377 3.623 11 N -0.426 5.426 12 C -0.310 4.310 13 H 0.104 0.896 14 C 0.030 3.970 15 N -0.869 5.869 16 Si 0.933 3.067 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.270 1.270 20 C 0.240 3.760 21 C 0.261 3.739 22 N -0.490 5.490 23 N -0.540 5.540 24 H 0.015 0.985 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.349 0.651 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.275 0.725 35 H 0.116 0.884 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.564 4.669 2.897 11.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.302 5.302 3 C 0.028 3.972 4 H 0.103 0.897 5 C -0.234 4.234 6 C 0.048 3.952 7 C -0.314 4.314 8 C -0.063 4.063 9 C -0.274 4.274 10 C 0.138 3.862 11 N -0.118 5.118 12 C -0.438 4.438 13 H 0.122 0.878 14 C -0.175 4.175 15 N -0.505 5.505 16 Si 0.759 3.241 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.194 1.194 20 C 0.113 3.887 21 C -0.058 4.058 22 N -0.170 5.170 23 N -0.259 5.259 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.168 0.832 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.153 3.517 1.467 9.915 hybrid contribution 1.047 0.810 0.319 1.361 sum -8.106 4.327 1.786 9.361 Atomic orbital electron populations 1.22226 0.88825 1.01478 0.99680 1.60301 1.05994 1.12910 1.50983 1.20340 0.92189 0.89974 0.94661 0.89683 1.22429 1.01364 1.02400 0.97216 1.20323 0.93410 0.88514 0.92933 1.20985 0.98827 0.99209 1.12385 1.20970 0.93419 0.96645 0.95231 1.21211 1.02184 0.93108 1.10907 1.18469 0.88726 0.86120 0.92873 1.42290 1.16501 1.06184 1.46858 1.19635 0.90896 1.18368 1.14937 0.87824 1.25344 0.98748 0.97687 0.95760 1.69916 1.37418 1.26061 1.17127 0.85830 0.79716 0.79154 0.79406 1.19979 1.20973 1.19413 1.18520 0.98239 0.91713 0.80240 1.29306 0.89879 0.91862 0.94704 1.80793 1.12148 1.09314 1.14776 1.66788 1.05602 1.28619 1.24876 0.96670 0.92110 0.91722 0.83222 0.92817 0.91841 0.92009 0.87470 0.86955 0.85746 0.91441 0.86659 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.50 60.07 0.63 0.94 16 2 N -0.67 -9.79 6.14 -115.25 -0.71 -10.50 16 3 C 0.14 2.05 2.83 -68.87 -0.20 1.86 16 4 H 0.09 1.13 7.77 -51.93 -0.40 0.72 16 5 C -0.17 -2.33 9.14 37.15 0.34 -1.99 16 6 C 0.19 3.54 5.89 -82.61 -0.49 3.05 16 7 C -0.29 -5.02 9.76 -39.38 -0.38 -5.40 16 8 C -0.04 -0.67 10.17 -39.32 -0.40 -1.07 16 9 C -0.25 -5.18 9.27 -39.19 -0.36 -5.55 16 10 C 0.38 8.50 7.29 -155.06 -1.13 7.37 16 11 N -0.43 -9.99 2.69 -118.17 -0.32 -10.31 16 12 C -0.31 -7.45 8.98 -15.07 -0.14 -7.59 16 13 H 0.10 2.40 6.25 -52.49 -0.33 2.07 16 14 C 0.03 0.71 4.93 -17.45 -0.09 0.63 16 15 N -0.87 -21.93 9.38 55.49 0.52 -21.41 16 16 Si 0.93 18.82 29.59 -169.99 -5.03 13.79 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 C 0.24 5.29 5.12 -6.83 -0.03 5.25 16 21 C 0.26 6.30 13.50 -20.79 -0.28 6.02 16 22 N -0.49 -12.60 18.53 42.12 0.78 -11.82 16 23 N -0.54 -11.32 8.55 -8.66 -0.07 -11.39 16 24 H 0.01 0.15 7.44 -51.93 -0.39 -0.23 16 25 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.35 5.26 8.56 -39.29 -0.34 4.93 16 28 H 0.05 0.60 7.45 -51.93 -0.39 0.22 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 31 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 33 H 0.12 2.58 6.23 -52.49 -0.33 2.26 16 34 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.12 2.54 6.56 -51.93 -0.34 2.20 16 36 H 0.09 1.87 7.49 -51.93 -0.39 1.48 16 LS Contribution 308.21 15.07 4.64 4.64 Total: -1.00 -27.84 308.21 -7.27 -35.11 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -4.56 Total: 8.36 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.53 Total: 3.52 kcal Atomic # 7 Polarization: -65.63 SS G_CDS: 0.20 Total: -65.43 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.84 -7.27 -35.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690980527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.509 kcal (2) G-P(sol) polarization free energy of solvation -27.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds