Wall clock time and date at job start Mon Mar 30 2020 05:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 111.00285 * 2 1 4 4 H 1.09003 * 109.46679 * 35.00422 * 3 2 1 5 5 C 1.52994 * 109.47242 * 275.00804 * 3 2 1 6 6 C 1.50689 * 109.47127 * 155.00144 * 3 2 1 7 7 C 1.38169 * 119.56816 * 205.00198 * 6 3 2 8 8 C 1.38839 * 119.33671 * 179.97438 * 7 6 3 9 9 C 1.38353 * 118.51022 * 0.02562 * 8 7 6 10 10 C 1.39187 * 119.08681 * 359.97438 * 9 8 7 11 11 N 1.38841 * 119.70555 * 179.97438 * 10 9 8 12 12 C 1.36913 * 120.00304 * 5.00477 * 11 10 9 13 13 H 1.07995 * 120.00291 * 20.88566 * 12 11 10 14 14 C 1.38820 * 120.00098 * 200.88063 * 12 11 10 15 15 N 1.31570 * 119.99551 * 17.79427 * 14 12 11 16 16 Si 1.86794 * 120.00122 * 197.79718 * 14 12 11 17 17 H 1.48506 * 109.47351 * 85.86008 * 16 14 12 18 18 H 1.48501 * 109.47221 * 205.86104 * 16 14 12 19 19 H 1.48495 * 109.47081 * 325.86198 * 16 14 12 20 20 C 1.46506 * 119.99889 * 185.00078 * 11 10 9 21 21 C 1.47199 * 109.46876 * 83.91956 * 20 11 10 22 22 N 5.46547 * 147.81524 * 230.12704 * 2 1 3 23 23 N 1.31866 * 119.57129 * 24.72766 * 6 3 2 24 24 H 1.08996 * 109.47137 * 59.99059 * 1 2 3 25 25 H 1.09004 * 109.46709 * 300.00098 * 1 2 3 26 26 H 1.08991 * 109.47580 * 179.97438 * 1 2 3 27 27 H 1.00904 * 110.99666 * 236.05428 * 2 1 3 28 28 H 1.08998 * 109.47865 * 59.99402 * 5 3 2 29 29 H 1.08996 * 109.47327 * 180.02562 * 5 3 2 30 30 H 1.09003 * 109.46972 * 299.99439 * 5 3 2 31 31 H 1.07996 * 120.33192 * 0.02562 * 7 6 3 32 32 H 1.08003 * 120.75110 * 180.02562 * 8 7 6 33 33 H 1.07995 * 120.45878 * 179.97438 * 9 8 7 34 34 H 0.97006 * 119.99185 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.47370 * 203.92076 * 20 11 10 36 36 H 1.08999 * 109.47210 * 323.92705 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3399 2.0123 0.5895 5 6 2.0608 1.8927 -1.4369 6 6 3.3776 1.3789 0.6004 7 6 3.8635 2.5357 1.1790 8 6 5.1373 2.5370 1.7312 9 6 5.8800 1.3708 1.6811 10 6 5.3276 0.2420 1.0827 11 7 6.0617 -0.9350 1.0249 12 6 7.2803 -1.0129 1.6442 13 1 7.5280 -0.3233 2.4376 14 6 8.1976 -1.9784 1.2524 15 7 8.0640 -2.5791 0.0895 16 14 9.6213 -2.4248 2.3762 17 1 9.1826 -3.4638 3.3423 18 1 10.7481 -2.9490 1.5633 19 1 10.0652 -1.2165 3.1165 20 6 5.5324 -2.0937 0.3014 21 6 5.8495 -1.9649 -1.1303 22 7 6.0946 -1.8663 -2.2342 23 7 4.1056 0.2797 0.5716 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0275 -0.0005 27 1 1.8306 -0.5260 -0.7815 28 1 1.0611 1.8873 -1.8713 29 1 2.4519 2.9101 -1.4370 30 1 2.7165 1.2518 -2.0265 31 1 3.2581 3.4297 1.2021 32 1 5.5396 3.4284 2.1895 33 1 6.8745 1.3367 2.1006 34 1 8.7052 -3.2536 -0.1844 35 1 5.9850 -3.0046 0.6932 36 1 4.4512 -2.1403 0.4312 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690980527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:12 Heat of formation + Delta-G solvation = 69.194671 kcal Electronic energy + Delta-G solvation = -19360.828148 eV Core-core repulsion = 16459.070823 eV Total energy + Delta-G solvation = -2901.757325 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.97532 -38.65638 -37.30825 -36.33412 -33.92239 -32.87018 -31.79316 -30.14826 -28.72319 -26.22101 -26.03291 -24.28224 -22.65803 -21.72531 -19.39064 -18.73142 -17.89484 -16.97726 -16.66104 -16.34152 -15.88985 -15.62989 -15.19211 -15.04605 -14.71245 -14.52920 -14.00351 -13.82292 -13.61582 -13.30701 -13.29614 -13.13420 -12.94997 -12.83708 -12.63236 -12.30784 -12.22192 -12.14639 -12.06046 -11.86816 -11.35575 -10.52084 -10.17417 -9.86924 -9.15044 -8.63064 -8.30360 -5.77637 0.73614 0.91729 1.49550 1.52900 1.60119 1.98843 2.32802 2.40779 2.93593 3.16029 3.30595 3.47598 3.72142 3.83092 4.16096 4.30829 4.39870 4.59515 4.65102 4.69463 4.71412 4.77078 4.84338 4.90322 4.93856 5.00701 5.12922 5.22020 5.28130 5.44083 5.49353 5.76568 5.91366 6.20375 6.34441 6.56311 6.64514 7.09960 7.31515 7.37137 7.94007 8.70653 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.006448 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.899725 B = 4341.310883 C = 4966.782549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.691 5.691 3 C 0.141 3.859 4 H 0.109 0.891 5 C -0.166 4.166 6 C 0.175 3.825 7 C -0.275 4.275 8 C -0.033 4.033 9 C -0.273 4.273 10 C 0.357 3.643 11 N -0.450 5.450 12 C -0.320 4.320 13 H 0.105 0.895 14 C -0.011 4.011 15 N -0.904 5.904 16 Si 0.995 3.005 17 H -0.267 1.267 18 H -0.293 1.293 19 H -0.264 1.264 20 C 0.250 3.750 21 C 0.272 3.728 22 N -0.526 5.526 23 N -0.551 5.551 24 H 0.029 0.971 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.342 0.658 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.117 0.883 34 H 0.269 0.731 35 H 0.112 0.888 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.261 6.574 3.877 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.321 5.321 3 C 0.030 3.970 4 H 0.126 0.874 5 C -0.225 4.225 6 C 0.032 3.968 7 C -0.299 4.299 8 C -0.059 4.059 9 C -0.299 4.299 10 C 0.120 3.880 11 N -0.146 5.146 12 C -0.448 4.448 13 H 0.122 0.878 14 C -0.212 4.212 15 N -0.542 5.542 16 Si 0.820 3.180 17 H -0.192 1.192 18 H -0.220 1.220 19 H -0.188 1.188 20 C 0.122 3.878 21 C -0.045 4.045 22 N -0.207 5.207 23 N -0.270 5.270 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.160 0.840 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.135 0.865 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.903 5.477 2.471 12.449 hybrid contribution 1.364 0.445 0.032 1.435 sum -9.539 5.922 2.502 11.503 Atomic orbital electron populations 1.22267 0.86683 1.02311 1.00665 1.60274 1.08077 1.12831 1.50925 1.20429 0.90416 0.90683 0.95432 0.87361 1.22346 1.02252 1.01945 0.95982 1.21160 0.94870 0.88213 0.92584 1.21501 0.98605 1.00090 1.09740 1.21405 0.93394 0.96743 0.94315 1.21367 1.02604 0.94018 1.11928 1.18846 0.89371 0.86509 0.93268 1.42343 1.16882 1.06961 1.48376 1.19834 0.91410 1.18538 1.14998 0.87782 1.26052 1.00781 0.97644 0.96688 1.70019 1.38399 1.27081 1.18701 0.84878 0.76633 0.78917 0.77591 1.19249 1.21979 1.18839 1.18530 0.98894 0.91502 0.78836 1.29867 0.88828 0.90742 0.95108 1.80763 1.13469 1.10595 1.15868 1.66843 1.05222 1.30133 1.24842 0.95200 0.91376 0.91128 0.84036 0.90381 0.91126 0.94701 0.83687 0.83456 0.86456 0.92086 0.87073 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.50 127.69 1.34 1.93 16 2 N -0.69 -18.77 6.14 -518.55 -3.18 -21.95 16 3 C 0.14 3.75 2.83 44.16 0.13 3.87 16 4 H 0.11 2.39 7.77 -2.39 -0.02 2.37 16 5 C -0.17 -3.97 9.14 71.98 0.66 -3.31 16 6 C 0.17 6.04 5.89 42.53 0.25 6.29 16 7 C -0.27 -8.57 9.76 22.40 0.22 -8.35 16 8 C -0.03 -1.11 10.17 22.44 0.23 -0.88 16 9 C -0.27 -11.25 9.27 22.53 0.21 -11.04 16 10 C 0.36 16.10 7.29 133.10 0.97 17.07 16 11 N -0.45 -21.51 2.69 -527.78 -1.42 -22.93 16 12 C -0.32 -15.65 8.98 84.04 0.75 -14.90 16 13 H 0.10 4.91 6.25 -2.91 -0.02 4.89 16 14 C -0.01 -0.51 4.93 84.87 0.42 -0.10 16 15 N -0.90 -46.96 9.38 21.65 0.20 -46.75 16 16 Si 1.00 39.22 29.59 68.60 2.03 41.25 16 17 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 C 0.25 11.27 5.12 84.57 0.43 11.71 16 21 C 0.27 13.52 13.50 89.45 1.21 14.72 16 22 N -0.53 -27.77 18.53 20.00 0.37 -27.40 16 23 N -0.55 -22.75 8.55 -181.31 -1.55 -24.30 16 24 H 0.03 0.50 7.44 -2.39 -0.02 0.48 16 25 H 0.07 1.23 8.06 -2.39 -0.02 1.21 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.34 9.99 8.56 -89.69 -0.77 9.22 16 28 H 0.08 1.49 7.45 -2.39 -0.02 1.47 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.01 8.13 -2.39 -0.02 1.00 16 31 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.12 4.90 6.23 -2.91 -0.02 4.88 16 34 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 35 H 0.11 5.07 6.56 -2.39 -0.02 5.06 16 36 H 0.11 4.46 7.49 -2.39 -0.02 4.44 16 Total: -1.00 -60.62 308.21 3.60 -57.02 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.33 Total: 28.04 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 6.81 Total: 17.02 kcal Atomic # 7 Polarization: -137.75 SS G_CDS: -5.58 Total: -143.33 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -60.62 3.60 -57.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690980527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.217 kcal (2) G-P(sol) polarization free energy of solvation -60.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds