Wall clock time and date at job start Mon Mar 30 2020 04:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48499 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47525 * 300.00522 * 3 2 1 6 6 H 1.48497 * 109.47114 * 60.00342 * 3 2 1 7 7 C 1.39928 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00296 * 197.90211 * 7 2 1 9 9 C 1.41407 * 119.99574 * 17.89931 * 7 2 1 10 10 C 1.40787 * 120.21173 * 24.43986 * 9 7 2 11 11 C 1.37648 * 119.89490 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32444 * 359.74387 * 11 10 9 13 13 C 1.39302 * 120.42476 * 0.51722 * 12 11 10 14 14 N 1.39686 * 119.94877 * 179.76144 * 13 12 11 15 15 C 1.46492 * 120.00395 * 359.44693 * 14 13 12 16 16 H 1.08997 * 109.39991 * 35.27180 * 15 14 13 17 17 C 1.53065 * 109.40225 * 155.10520 * 15 14 13 18 18 C 1.53348 * 108.42564 * 169.03112 * 17 15 14 19 19 C 1.52922 * 108.67130 * 292.46595 * 18 17 15 20 20 N 1.45749 * 110.48794 * 50.75569 * 19 18 17 21 21 C 1.33239 * 124.07311 * 340.84410 * 20 19 18 22 22 O 1.21274 * 118.16188 * 182.29176 * 21 20 19 23 23 C 1.38313 * 120.09478 * 359.48022 * 13 12 11 24 24 H 0.97003 * 120.00418 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.04717 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.83396 * 180.02562 * 11 10 9 27 27 H 1.08003 * 119.78913 * 180.27141 * 12 11 10 28 28 H 0.97005 * 119.99101 * 179.72361 * 14 13 12 29 29 H 1.08999 * 109.67487 * 288.76116 * 17 15 14 30 30 H 1.08998 * 109.67440 * 49.29585 * 17 15 14 31 31 H 1.08994 * 109.60384 * 52.21954 * 18 17 15 32 32 H 1.08998 * 109.60658 * 172.55195 * 18 17 15 33 33 H 1.08998 * 109.30228 * 171.06515 * 19 18 17 34 34 H 1.09002 * 109.30146 * 290.44367 * 19 18 17 35 35 H 0.97003 * 117.94964 * 160.92947 * 20 19 18 36 36 H 1.07994 * 120.16088 * 180.23282 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3466 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0487 -1.2345 0.2869 9 6 1.3523 -2.4066 -0.3775 10 6 0.2218 -2.3603 -1.2152 11 6 -0.4118 -3.5273 -1.5776 12 6 0.0606 -4.7488 -1.1264 13 6 1.1748 -4.8098 -0.2926 14 7 1.6397 -6.0466 0.1606 15 6 0.9484 -7.2774 -0.2310 16 1 0.5754 -7.1745 -1.2500 17 6 1.9260 -8.4532 -0.1636 18 6 1.1286 -9.7553 -0.3054 19 6 0.2523 -9.9304 0.9356 20 7 -0.5140 -8.7179 1.1942 21 6 -0.2047 -7.5197 0.7001 22 8 -0.8936 -6.5739 1.0190 23 6 1.8250 -3.6480 0.0824 24 1 -0.4851 0.8400 0.0004 25 1 -0.1477 -1.4106 -1.5729 26 1 -1.2787 -3.4907 -2.2207 27 1 -0.4406 -5.6594 -1.4197 28 1 2.4180 -6.0901 0.7380 29 1 2.6496 -8.3759 -0.9751 30 1 2.4459 -8.4437 0.7944 31 1 0.4987 -9.7035 -1.1934 32 1 1.8154 -10.5972 -0.3927 33 1 -0.4332 -10.7630 0.7781 34 1 0.8855 -10.1468 1.7961 35 1 -1.2972 -8.7875 1.7623 36 1 2.6911 -3.6944 0.7257 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691517162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:32 Heat of formation + Delta-G solvation = -15.003921 kcal Electronic energy + Delta-G solvation = -19064.725073 eV Core-core repulsion = 16127.023872 eV Total energy + Delta-G solvation = -2937.701201 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25093 -37.52793 -36.34250 -35.02215 -33.19874 -31.67860 -29.66693 -29.18450 -26.62500 -25.15830 -23.96313 -22.61887 -20.75105 -20.19271 -19.00770 -17.35336 -17.13471 -16.10847 -15.74152 -15.42049 -14.97783 -14.53431 -14.16348 -14.00491 -13.77637 -13.49704 -12.80707 -12.64062 -12.09689 -11.97657 -11.66069 -11.52226 -11.38123 -11.16698 -11.07160 -10.87057 -10.56387 -10.29774 -9.73544 -9.66726 -9.22118 -9.08694 -8.97580 -8.61133 -7.24955 -6.59766 -6.14885 -4.18812 2.89272 2.93994 3.16338 3.22091 3.27278 3.37051 3.54279 4.04326 4.13170 4.53058 4.60612 4.75638 4.78134 4.87209 5.17341 5.29163 5.37340 5.58500 5.62002 5.82381 5.95233 6.00786 6.43048 6.67575 6.88461 7.08766 7.14009 7.22807 7.42795 7.46186 7.48082 7.85977 8.01590 8.25572 8.35431 8.49781 8.59249 8.66987 8.89359 9.11076 9.23156 10.36545 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.045159 B = 0.004404 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.877168 B = 6355.701659 C = 6540.472884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.077 3.923 3 Si 0.904 3.096 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.139 3.861 10 C -0.197 4.197 11 C -0.077 4.077 12 C -0.275 4.275 13 C 0.226 3.774 14 N -0.742 5.742 15 C 0.154 3.846 16 H 0.106 0.894 17 C -0.130 4.130 18 C -0.133 4.133 19 C 0.112 3.888 20 N -0.731 5.731 21 C 0.488 3.512 22 O -0.517 6.517 23 C -0.284 4.284 24 H 0.277 0.723 25 H 0.114 0.886 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.391 0.609 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.393 0.607 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 -17.475 -0.404 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.136 3.864 10 C -0.217 4.217 11 C -0.097 4.097 12 C -0.298 4.298 13 C 0.129 3.871 14 N -0.375 5.375 15 C 0.043 3.957 16 H 0.123 0.877 17 C -0.168 4.168 18 C -0.171 4.171 19 C -0.013 4.013 20 N -0.386 5.386 21 C 0.272 3.728 22 O -0.390 6.390 23 C -0.307 4.307 24 H 0.088 0.912 25 H 0.132 0.868 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.224 0.776 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.228 0.772 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.043 -16.833 -0.475 16.963 hybrid contribution 0.170 0.530 0.661 0.864 sum 2.213 -16.303 0.186 16.454 Atomic orbital electron populations 1.69889 1.07520 1.28706 1.35733 1.25876 0.94637 1.01071 0.92401 0.86341 0.81005 0.81376 0.78388 1.18523 1.19828 1.20179 1.19540 0.98021 0.91305 1.40776 0.90713 1.17311 0.90437 0.91213 0.87439 1.21158 1.00507 0.96581 1.03467 1.20422 0.97580 0.92927 0.98725 1.19768 1.02292 0.96242 1.11490 1.17369 0.93247 0.83480 0.92979 1.44168 1.33131 1.02104 1.58122 1.20475 0.90791 0.86420 0.98022 0.87656 1.21942 0.98216 0.93066 1.03579 1.21836 0.98959 0.98276 0.98077 1.21301 0.95041 0.87029 0.97893 1.45677 1.31636 1.08179 1.53144 1.21417 0.87172 0.82114 0.82093 1.90846 1.50242 1.40011 1.57909 1.20362 1.06566 0.91479 1.12314 0.91205 0.86824 0.89778 0.90100 0.77554 0.89944 0.90931 0.90686 0.89584 0.90920 0.92110 0.77227 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.87 10.96 55.55 0.61 -21.26 16 2 C 0.08 2.06 5.14 -17.35 -0.09 1.97 16 3 Si 0.90 19.58 29.60 -169.99 -5.03 14.55 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.47 -13.12 9.05 -37.74 -0.34 -13.46 16 8 H 0.07 2.02 7.91 -52.49 -0.42 1.60 16 9 C 0.14 3.97 5.57 -106.85 -0.60 3.37 16 10 C -0.20 -5.54 8.70 -38.83 -0.34 -5.88 16 11 C -0.08 -2.01 10.02 -39.69 -0.40 -2.41 16 12 C -0.28 -6.79 8.30 -39.08 -0.32 -7.12 16 13 C 0.23 5.42 6.20 -83.86 -0.52 4.90 16 14 N -0.74 -13.88 5.12 -53.56 -0.27 -14.15 16 15 C 0.15 2.33 2.44 -69.30 -0.17 2.16 16 16 H 0.11 1.67 6.46 -51.93 -0.34 1.34 16 17 C -0.13 -1.29 5.50 -26.52 -0.15 -1.44 16 18 C -0.13 -0.96 6.02 -26.59 -0.16 -1.12 16 19 C 0.11 0.84 7.17 -4.49 -0.03 0.80 16 20 N -0.73 -8.59 5.44 -61.42 -0.33 -8.93 16 21 C 0.49 8.10 7.37 -11.92 -0.09 8.01 16 22 O -0.52 -11.59 15.99 5.56 0.09 -11.50 16 23 C -0.28 -7.45 9.63 -38.67 -0.37 -7.83 16 24 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 25 H 0.11 3.28 6.15 -52.49 -0.32 2.95 16 26 H 0.08 1.97 8.06 -52.49 -0.42 1.55 16 27 H 0.08 1.85 6.01 -52.48 -0.32 1.54 16 28 H 0.39 6.56 8.59 -40.82 -0.35 6.21 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.39 4.33 8.80 -40.82 -0.36 3.97 16 36 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 296.65 15.07 4.47 4.47 Total: -1.00 -34.06 296.65 -8.66 -42.72 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -4.61 Total: 12.13 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -3.57 Total: -18.02 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.00 Total: -44.34 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.06 -8.66 -42.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691517162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.712 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds