Wall clock time and date at job start Mon Mar 30 2020 04:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48499 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47525 * 300.00522 * 3 2 1 6 6 H 1.48497 * 109.47114 * 60.00342 * 3 2 1 7 7 C 1.39928 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00296 * 197.90211 * 7 2 1 9 9 C 1.41407 * 119.99574 * 17.89931 * 7 2 1 10 10 C 1.40787 * 120.21173 * 24.43986 * 9 7 2 11 11 C 1.37648 * 119.89490 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32444 * 359.74387 * 11 10 9 13 13 C 1.39302 * 120.42476 * 0.51722 * 12 11 10 14 14 N 1.39686 * 119.94877 * 179.76144 * 13 12 11 15 15 C 1.46492 * 120.00395 * 359.44693 * 14 13 12 16 16 H 1.08997 * 109.39991 * 35.27180 * 15 14 13 17 17 C 1.53065 * 109.40225 * 155.10520 * 15 14 13 18 18 C 1.53348 * 108.42564 * 169.03112 * 17 15 14 19 19 C 1.52922 * 108.67130 * 292.46595 * 18 17 15 20 20 N 1.45749 * 110.48794 * 50.75569 * 19 18 17 21 21 C 1.33239 * 124.07311 * 340.84410 * 20 19 18 22 22 O 1.21274 * 118.16188 * 182.29176 * 21 20 19 23 23 C 1.38313 * 120.09478 * 359.48022 * 13 12 11 24 24 H 0.97003 * 120.00418 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.04717 * 0.02562 * 10 9 7 26 26 H 1.07997 * 119.83396 * 180.02562 * 11 10 9 27 27 H 1.08003 * 119.78913 * 180.27141 * 12 11 10 28 28 H 0.97005 * 119.99101 * 179.72361 * 14 13 12 29 29 H 1.08999 * 109.67487 * 288.76116 * 17 15 14 30 30 H 1.08998 * 109.67440 * 49.29585 * 17 15 14 31 31 H 1.08994 * 109.60384 * 52.21954 * 18 17 15 32 32 H 1.08998 * 109.60658 * 172.55195 * 18 17 15 33 33 H 1.08998 * 109.30228 * 171.06515 * 19 18 17 34 34 H 1.09002 * 109.30146 * 290.44367 * 19 18 17 35 35 H 0.97003 * 117.94964 * 160.92947 * 20 19 18 36 36 H 1.07994 * 120.16088 * 180.23282 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3466 -0.0006 5 1 1.8834 2.3966 -1.2124 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0487 -1.2345 0.2869 9 6 1.3523 -2.4066 -0.3775 10 6 0.2218 -2.3603 -1.2152 11 6 -0.4118 -3.5273 -1.5776 12 6 0.0606 -4.7488 -1.1264 13 6 1.1748 -4.8098 -0.2926 14 7 1.6397 -6.0466 0.1606 15 6 0.9484 -7.2774 -0.2310 16 1 0.5754 -7.1745 -1.2500 17 6 1.9260 -8.4532 -0.1636 18 6 1.1286 -9.7553 -0.3054 19 6 0.2523 -9.9304 0.9356 20 7 -0.5140 -8.7179 1.1942 21 6 -0.2047 -7.5197 0.7001 22 8 -0.8936 -6.5739 1.0190 23 6 1.8250 -3.6480 0.0824 24 1 -0.4851 0.8400 0.0004 25 1 -0.1477 -1.4106 -1.5729 26 1 -1.2787 -3.4907 -2.2207 27 1 -0.4406 -5.6594 -1.4197 28 1 2.4180 -6.0901 0.7380 29 1 2.6496 -8.3759 -0.9751 30 1 2.4459 -8.4437 0.7944 31 1 0.4987 -9.7035 -1.1934 32 1 1.8154 -10.5972 -0.3927 33 1 -0.4332 -10.7630 0.7781 34 1 0.8855 -10.1468 1.7961 35 1 -1.2972 -8.7875 1.7623 36 1 2.6911 -3.6944 0.7257 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691517162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:31 Heat of formation + Delta-G solvation = -39.703481 kcal Electronic energy + Delta-G solvation = -19065.796127 eV Core-core repulsion = 16127.023872 eV Total energy + Delta-G solvation = -2938.772254 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.45773 -39.39671 -37.47416 -36.62401 -35.01421 -32.90262 -31.68634 -30.52516 -28.16235 -27.16854 -25.08983 -23.60303 -22.66767 -22.02559 -20.10367 -19.22976 -18.23758 -17.45384 -17.24077 -16.95084 -16.65203 -16.24648 -15.55033 -15.12029 -15.00692 -14.54281 -14.41157 -14.32066 -13.97828 -13.58331 -13.21827 -12.81286 -12.79251 -12.60703 -12.36224 -12.19497 -12.09229 -11.81067 -11.68087 -11.28396 -11.19741 -10.95527 -10.32690 -9.98107 -9.32813 -8.59461 -7.99406 -6.31058 1.05352 1.31514 1.38792 1.54714 1.57824 1.64901 2.23578 2.36459 2.77374 2.82308 3.69014 3.73627 3.89209 3.90131 4.04891 4.30597 4.46865 4.57059 4.70619 4.78582 4.82067 5.07177 5.08422 5.11341 5.16391 5.20471 5.31713 5.41349 5.57223 5.88241 5.94852 6.00266 6.19407 6.28873 6.37395 6.59851 6.86393 6.98491 7.02446 7.21801 7.33469 8.39614 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.045159 B = 0.004404 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.877168 B = 6355.701659 C = 6540.472884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.033 3.967 3 Si 0.986 3.014 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.266 1.266 7 C -0.503 4.503 8 H 0.075 0.925 9 C 0.110 3.890 10 C -0.230 4.230 11 C -0.082 4.082 12 C -0.281 4.281 13 C 0.238 3.762 14 N -0.734 5.734 15 C 0.147 3.853 16 H 0.098 0.902 17 C -0.121 4.121 18 C -0.128 4.128 19 C 0.102 3.898 20 N -0.716 5.716 21 C 0.485 3.515 22 O -0.590 6.590 23 C -0.308 4.308 24 H 0.286 0.714 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.400 0.600 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.397 0.603 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 -19.862 -0.298 20.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.179 1.179 5 H -0.188 1.188 6 H -0.191 1.191 7 C -0.533 4.533 8 H 0.093 0.907 9 C 0.108 3.892 10 C -0.250 4.250 11 C -0.101 4.101 12 C -0.304 4.304 13 C 0.138 3.862 14 N -0.367 5.367 15 C 0.037 3.963 16 H 0.115 0.885 17 C -0.159 4.159 18 C -0.166 4.166 19 C -0.021 4.021 20 N -0.368 5.368 21 C 0.270 3.730 22 O -0.469 6.469 23 C -0.332 4.332 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.121 0.879 27 H 0.116 0.884 28 H 0.236 0.764 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.232 0.768 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.222 -19.351 -0.356 19.621 hybrid contribution -0.237 1.018 0.661 1.237 sum 2.985 -18.333 0.306 18.577 Atomic orbital electron populations 1.69959 1.09257 1.30287 1.35921 1.26841 0.95446 1.04715 0.91115 0.85118 0.79411 0.75917 0.78909 1.17947 1.18760 1.19097 1.19825 0.98309 0.92549 1.42577 0.90712 1.17703 0.91050 0.92524 0.87967 1.21084 1.01865 0.96646 1.05445 1.20700 0.97884 0.92876 0.98626 1.19985 1.02571 0.96373 1.11463 1.17425 0.92192 0.85038 0.91539 1.44208 1.33285 1.01716 1.57444 1.20793 0.91771 0.86683 0.97036 0.88477 1.21956 0.97412 0.91887 1.04642 1.21902 0.99201 0.97717 0.97776 1.21735 0.95779 0.85578 0.98971 1.45659 1.31606 1.08180 1.51340 1.21583 0.86796 0.82658 0.81981 1.90821 1.52625 1.42667 1.60801 1.20520 1.07473 0.91902 1.13322 0.90342 0.88504 0.87891 0.88432 0.76440 0.88707 0.90054 0.90730 0.85877 0.87775 0.90156 0.76753 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.21 10.96 21.82 0.24 -46.97 16 2 C 0.03 1.80 5.14 85.25 0.44 2.24 16 3 Si 0.99 40.74 29.60 68.60 2.03 42.77 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.50 -29.41 9.05 23.46 0.21 -29.20 16 8 H 0.07 4.19 7.91 -2.92 -0.02 4.17 16 9 C 0.11 6.60 5.57 -21.31 -0.12 6.48 16 10 C -0.23 -13.58 8.70 22.75 0.20 -13.38 16 11 C -0.08 -4.39 10.02 22.20 0.22 -4.16 16 12 C -0.28 -14.13 8.30 22.59 0.19 -13.94 16 13 C 0.24 11.61 6.20 38.16 0.24 11.85 16 14 N -0.73 -27.09 5.12 -323.36 -1.66 -28.75 16 15 C 0.15 4.23 2.44 44.11 0.11 4.34 16 16 H 0.10 2.97 6.46 -2.39 -0.02 2.96 16 17 C -0.12 -1.98 5.50 30.73 0.17 -1.81 16 18 C -0.13 -1.24 6.02 30.68 0.18 -1.05 16 19 C 0.10 1.06 7.17 86.49 0.62 1.68 16 20 N -0.72 -15.12 5.44 -467.47 -2.54 -17.66 16 21 C 0.48 15.63 7.37 87.73 0.65 16.27 16 22 O -0.59 -26.90 15.99 -3.01 -0.05 -26.95 16 23 C -0.31 -16.77 9.63 22.86 0.22 -16.55 16 24 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 25 H 0.10 5.92 6.15 -2.91 -0.02 5.90 16 26 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 27 H 0.10 4.50 6.01 -2.91 -0.02 4.48 16 28 H 0.40 13.08 8.59 -92.70 -0.80 12.29 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 31 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 32 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.40 8.03 8.80 -92.71 -0.82 7.21 16 36 H 0.09 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -79.13 296.65 0.85 -78.28 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: -0.50 Total: 36.50 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 3.32 Total: -37.23 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -3.96 Total: -93.38 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -79.13 0.85 -78.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691517162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.579 kcal (2) G-P(sol) polarization free energy of solvation -79.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds