Wall clock time and date at job start Mon Mar 30 2020 04:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33039 * 120.00254 * 2 1 4 4 C 1.50698 * 120.00105 * 354.05961 * 3 2 1 5 5 N 1.46904 * 109.47035 * 234.88450 * 4 3 2 6 6 C 1.47041 * 119.99790 * 180.02562 * 2 1 3 7 7 O 1.21635 * 120.00078 * 179.97438 * 6 2 1 8 8 N 1.34776 * 120.00138 * 0.02562 * 6 2 1 9 9 C 1.39103 * 120.00006 * 175.25144 * 8 6 2 10 10 C 1.39512 * 119.83660 * 216.21486 * 9 8 6 11 11 C 1.36362 * 120.16841 * 179.75700 * 10 9 8 12 12 C 1.40881 * 119.82700 * 0.52507 * 11 10 9 13 13 C 1.41132 * 120.16254 * 179.71838 * 12 11 10 14 14 H 1.07994 * 120.00259 * 208.72850 * 13 12 11 15 15 C 1.39917 * 119.99949 * 28.72069 * 13 12 11 16 16 N 1.30866 * 119.99667 * 10.61512 * 15 13 12 17 17 Si 1.86798 * 119.99984 * 190.61889 * 15 13 12 18 18 H 1.48497 * 109.47364 * 59.99813 * 17 15 13 19 19 H 1.48499 * 109.47024 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46983 * 299.99816 * 17 15 13 21 21 C 1.40881 * 119.67970 * 359.73284 * 12 11 10 22 22 C 1.36359 * 119.83426 * 0.02562 * 21 12 11 23 23 H 1.09001 * 109.46897 * 85.24797 * 1 2 3 24 24 H 1.08996 * 109.46960 * 205.24883 * 1 2 3 25 25 H 1.08997 * 109.46994 * 325.25373 * 1 2 3 26 26 H 1.08001 * 120.00024 * 174.32902 * 3 2 1 27 27 H 1.09007 * 109.47072 * 354.87941 * 4 3 2 28 28 H 1.08996 * 109.47472 * 114.87814 * 4 3 2 29 29 H 1.00899 * 110.99646 * 179.97438 * 5 4 3 30 30 H 1.00907 * 110.99466 * 303.94845 * 5 4 3 31 31 H 0.96989 * 120.00028 * 355.24862 * 8 6 2 32 32 H 1.08006 * 119.91861 * 0.02820 * 10 9 8 33 33 H 1.07997 * 120.08790 * 180.25416 * 11 10 9 34 34 H 0.97001 * 119.99384 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.08723 * 179.97438 * 21 12 11 36 36 H 1.07993 * 119.92048 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1521 0.0000 4 6 1.4249 2.4537 -0.1351 5 7 1.9717 3.2174 -1.2646 6 6 2.2421 -1.2734 -0.0006 7 8 3.4585 -1.2735 -0.0010 8 7 1.5682 -2.4406 -0.0016 9 6 2.2602 -3.6432 -0.1019 10 6 1.7103 -4.7022 -0.8247 11 6 2.3850 -5.8824 -0.9315 12 6 3.6354 -6.0343 -0.3004 13 6 4.3371 -7.2546 -0.4013 14 1 5.0050 -7.5606 0.3902 15 6 4.1672 -8.0682 -1.5269 16 7 3.5278 -7.6119 -2.5736 17 14 4.8530 -9.8058 -1.5355 18 1 4.2374 -10.5864 -0.4324 19 1 4.5422 -10.4541 -2.8348 20 1 6.3252 -9.7578 -1.3464 21 6 4.1818 -4.9622 0.4323 22 6 3.4978 -3.7863 0.5263 23 1 -0.3633 0.0851 -1.0242 24 1 -0.3633 -0.9295 0.4383 25 1 -0.3633 0.8444 0.5857 26 1 3.2483 1.1544 0.0924 27 1 0.3688 2.2497 -0.3118 28 1 1.5345 3.0326 0.7820 29 1 1.4866 4.0950 -1.3763 30 1 2.9641 3.3638 -1.1554 31 1 0.6008 -2.4421 0.0676 32 1 0.7498 -4.5856 -1.3046 33 1 1.9601 -6.6999 -1.4948 34 1 3.4104 -8.1758 -3.3540 35 1 5.1396 -5.0716 0.9191 36 1 3.9151 -2.9638 1.0879 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692516870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:16 Heat of formation + Delta-G solvation = -1.239825 kcal Electronic energy + Delta-G solvation = -18354.242167 eV Core-core repulsion = 15417.137822 eV Total energy + Delta-G solvation = -2937.104345 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76036 -37.45459 -36.22945 -34.44007 -33.34270 -32.62666 -29.56003 -28.93228 -27.52134 -25.70946 -24.46314 -21.98902 -21.02376 -20.09277 -18.37357 -17.36832 -17.20910 -16.18031 -15.68841 -15.16175 -15.11605 -14.58137 -14.45841 -13.89438 -13.25994 -13.17366 -12.98378 -12.83622 -12.56143 -12.12730 -11.96880 -11.73836 -11.28612 -11.27754 -11.08099 -11.01626 -10.72701 -10.00565 -9.51789 -9.37804 -9.34837 -9.09702 -8.86033 -8.76560 -7.51589 -6.91279 -6.67710 -4.29710 1.43210 2.72942 3.08300 3.11360 3.12413 3.18304 3.63451 3.86233 3.96528 4.47386 4.68368 4.74667 4.91077 5.04994 5.11863 5.27018 5.53823 5.58336 5.73110 5.84129 6.22403 6.40226 6.46993 6.50652 6.77837 6.80785 6.99282 7.07831 7.11885 7.23361 7.32014 7.63796 7.77858 7.91927 8.06424 8.31068 8.33244 8.62587 8.81064 8.91555 9.03070 10.24664 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.049926 B = 0.003639 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.699602 B = 7692.298417 C = 7807.219549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.162 4.162 3 C -0.087 4.087 4 C 0.082 3.918 5 N -0.845 5.845 6 C 0.535 3.465 7 O -0.535 6.535 8 N -0.644 5.644 9 C -0.006 4.006 10 C -0.115 4.115 11 C -0.148 4.148 12 C 0.105 3.895 13 C -0.459 4.459 14 H 0.077 0.923 15 C 0.072 3.928 16 N -0.801 5.801 17 Si 0.912 3.088 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.214 4.214 22 C -0.078 4.078 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.125 0.875 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.343 0.657 30 H 0.344 0.656 31 H 0.395 0.605 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.280 0.720 35 H 0.095 0.905 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.534 13.506 3.448 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.166 4.166 3 C -0.107 4.107 4 C -0.048 4.048 5 N -0.376 5.376 6 C 0.323 3.677 7 O -0.414 6.414 8 N -0.287 5.287 9 C -0.099 4.099 10 C -0.135 4.135 11 C -0.168 4.168 12 C 0.103 3.897 13 C -0.489 4.489 14 H 0.095 0.905 15 C -0.145 4.145 16 N -0.427 5.427 17 Si 0.737 3.263 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.234 4.234 22 C -0.097 4.097 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.143 0.857 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.230 0.770 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.999 12.818 2.741 14.860 hybrid contribution 0.121 -0.054 0.523 0.540 sum -6.879 12.764 3.265 14.863 Atomic orbital electron populations 1.20859 0.91405 1.02607 1.02729 1.21505 0.96182 0.93409 1.05492 1.23307 1.00615 0.92634 0.94154 1.20971 0.99371 0.92281 0.92147 1.58653 1.08919 1.25111 1.44889 1.18329 0.87516 0.83948 0.77875 1.90770 1.13470 1.87303 1.49832 1.42906 1.09639 1.04814 1.71334 1.17209 0.97510 0.86009 1.09140 1.20273 0.99360 0.94416 0.99460 1.20959 0.95078 0.96773 1.03974 1.17682 0.90663 0.91895 0.89482 1.19520 1.22982 1.02648 1.03709 0.90499 1.25913 0.93886 0.99958 0.94728 1.69804 1.32816 1.36752 1.03316 0.86302 0.80155 0.81601 0.78229 1.18913 1.20378 1.19053 1.20713 1.00105 0.93558 1.09005 1.20371 0.94180 0.96905 0.98287 0.90692 0.91565 0.91124 0.85680 0.89588 0.94213 0.84398 0.84341 0.77037 0.89143 0.85818 0.90905 0.88674 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 8.68 36.00 0.31 -0.86 16 2 C -0.16 -2.24 5.99 -102.86 -0.62 -2.86 16 3 C -0.09 -1.10 9.34 -36.11 -0.34 -1.43 16 4 C 0.08 0.74 6.86 -4.97 -0.03 0.71 16 5 N -0.85 -7.33 9.61 -11.41 -0.11 -7.44 16 6 C 0.53 10.10 7.57 -12.69 -0.10 10.00 16 7 O -0.54 -12.28 13.71 5.25 0.07 -12.21 16 8 N -0.64 -12.04 5.25 -10.82 -0.06 -12.09 16 9 C -0.01 -0.14 6.28 -83.61 -0.53 -0.67 16 10 C -0.11 -2.70 9.90 -39.78 -0.39 -3.09 16 11 C -0.15 -3.87 8.60 -39.26 -0.34 -4.21 16 12 C 0.11 2.88 5.55 -106.80 -0.59 2.28 16 13 C -0.46 -12.36 9.05 -37.86 -0.34 -12.71 16 14 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 15 C 0.07 1.82 5.25 -17.33 -0.09 1.73 16 16 N -0.80 -21.00 10.82 55.55 0.60 -20.40 16 17 Si 0.91 18.93 29.57 -169.99 -5.03 13.91 16 18 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C -0.21 -5.57 9.74 -39.26 -0.38 -5.95 16 22 C -0.08 -1.93 8.60 -39.78 -0.34 -2.27 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.61 6.42 -51.93 -0.33 0.27 16 25 H 0.07 0.55 6.69 -51.93 -0.35 0.20 16 26 H 0.13 1.76 7.51 -52.49 -0.39 1.36 16 27 H 0.09 0.71 5.78 -51.93 -0.30 0.41 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.34 2.12 9.08 -39.29 -0.36 1.76 16 30 H 0.34 2.73 8.99 -39.29 -0.35 2.38 16 31 H 0.39 5.85 6.79 -40.82 -0.28 5.58 16 32 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.12 3.30 6.20 -52.49 -0.33 2.98 16 34 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 35 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 36 H 0.11 2.59 6.30 -52.49 -0.33 2.25 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -31.67 304.02 -7.97 -39.65 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -4.26 Total: 13.34 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -3.78 Total: -19.32 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.43 Total: -39.94 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.67 -7.97 -39.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692516870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.406 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds