Wall clock time and date at job start Mon Mar 30 2020 04:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33039 * 120.00254 * 2 1 4 4 C 1.50698 * 120.00105 * 354.05961 * 3 2 1 5 5 N 1.46904 * 109.47035 * 234.88450 * 4 3 2 6 6 C 1.47041 * 119.99790 * 180.02562 * 2 1 3 7 7 O 1.21635 * 120.00078 * 179.97438 * 6 2 1 8 8 N 1.34776 * 120.00138 * 0.02562 * 6 2 1 9 9 C 1.39103 * 120.00006 * 175.25144 * 8 6 2 10 10 C 1.39512 * 119.83660 * 216.21486 * 9 8 6 11 11 C 1.36362 * 120.16841 * 179.75700 * 10 9 8 12 12 C 1.40881 * 119.82700 * 0.52507 * 11 10 9 13 13 C 1.41132 * 120.16254 * 179.71838 * 12 11 10 14 14 H 1.07994 * 120.00259 * 208.72850 * 13 12 11 15 15 C 1.39917 * 119.99949 * 28.72069 * 13 12 11 16 16 N 1.30866 * 119.99667 * 10.61512 * 15 13 12 17 17 Si 1.86798 * 119.99984 * 190.61889 * 15 13 12 18 18 H 1.48497 * 109.47364 * 59.99813 * 17 15 13 19 19 H 1.48499 * 109.47024 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46983 * 299.99816 * 17 15 13 21 21 C 1.40881 * 119.67970 * 359.73284 * 12 11 10 22 22 C 1.36359 * 119.83426 * 0.02562 * 21 12 11 23 23 H 1.09001 * 109.46897 * 85.24797 * 1 2 3 24 24 H 1.08996 * 109.46960 * 205.24883 * 1 2 3 25 25 H 1.08997 * 109.46994 * 325.25373 * 1 2 3 26 26 H 1.08001 * 120.00024 * 174.32902 * 3 2 1 27 27 H 1.09007 * 109.47072 * 354.87941 * 4 3 2 28 28 H 1.08996 * 109.47472 * 114.87814 * 4 3 2 29 29 H 1.00899 * 110.99646 * 179.97438 * 5 4 3 30 30 H 1.00907 * 110.99466 * 303.94845 * 5 4 3 31 31 H 0.96989 * 120.00028 * 355.24862 * 8 6 2 32 32 H 1.08006 * 119.91861 * 0.02820 * 10 9 8 33 33 H 1.07997 * 120.08790 * 180.25416 * 11 10 9 34 34 H 0.97001 * 119.99384 * 179.97438 * 16 15 13 35 35 H 1.07998 * 120.08723 * 179.97438 * 21 12 11 36 36 H 1.07993 * 119.92048 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1722 1.1521 0.0000 4 6 1.4249 2.4537 -0.1351 5 7 1.9717 3.2174 -1.2646 6 6 2.2421 -1.2734 -0.0006 7 8 3.4585 -1.2735 -0.0010 8 7 1.5682 -2.4406 -0.0016 9 6 2.2602 -3.6432 -0.1019 10 6 1.7103 -4.7022 -0.8247 11 6 2.3850 -5.8824 -0.9315 12 6 3.6354 -6.0343 -0.3004 13 6 4.3371 -7.2546 -0.4013 14 1 5.0050 -7.5606 0.3902 15 6 4.1672 -8.0682 -1.5269 16 7 3.5278 -7.6119 -2.5736 17 14 4.8530 -9.8058 -1.5355 18 1 4.2374 -10.5864 -0.4324 19 1 4.5422 -10.4541 -2.8348 20 1 6.3252 -9.7578 -1.3464 21 6 4.1818 -4.9622 0.4323 22 6 3.4978 -3.7863 0.5263 23 1 -0.3633 0.0851 -1.0242 24 1 -0.3633 -0.9295 0.4383 25 1 -0.3633 0.8444 0.5857 26 1 3.2483 1.1544 0.0924 27 1 0.3688 2.2497 -0.3118 28 1 1.5345 3.0326 0.7820 29 1 1.4866 4.0950 -1.3763 30 1 2.9641 3.3638 -1.1554 31 1 0.6008 -2.4421 0.0676 32 1 0.7498 -4.5856 -1.3046 33 1 1.9601 -6.6999 -1.4948 34 1 3.4104 -8.1758 -3.3540 35 1 5.1396 -5.0716 0.9191 36 1 3.9151 -2.9638 1.0879 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692516870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:16 Heat of formation + Delta-G solvation = -23.333725 kcal Electronic energy + Delta-G solvation = -18355.200230 eV Core-core repulsion = 15417.137822 eV Total energy + Delta-G solvation = -2938.062408 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33174 -39.22083 -37.27582 -36.21555 -34.87519 -33.81163 -31.50838 -30.80265 -28.41901 -27.21143 -25.80903 -23.62707 -22.83956 -21.74617 -19.70220 -19.24675 -18.52318 -17.76066 -17.06484 -16.56683 -16.27200 -15.85458 -15.72402 -15.56225 -14.89097 -14.55882 -14.13862 -14.02716 -13.90240 -13.76291 -13.54469 -13.26039 -12.87023 -12.78934 -12.74617 -12.49232 -12.19393 -11.78365 -11.43949 -11.19558 -10.84370 -10.62635 -10.26999 -9.52264 -9.49790 -8.83482 -8.58131 -6.31740 0.25587 0.90778 1.12294 1.39389 1.50661 1.52402 2.20875 2.22180 2.40378 2.77974 3.65140 3.73443 3.86855 3.93002 4.20580 4.34252 4.36873 4.49076 4.59651 4.76159 4.84436 4.90496 5.05581 5.11389 5.14318 5.30066 5.40103 5.44406 5.55134 5.65658 5.89472 6.01121 6.09250 6.16700 6.35369 6.58646 6.63298 6.71421 6.92089 6.96858 7.36359 8.36074 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.049926 B = 0.003639 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.699602 B = 7692.298417 C = 7807.219549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.178 4.178 3 C -0.073 4.073 4 C 0.087 3.913 5 N -0.859 5.859 6 C 0.529 3.471 7 O -0.585 6.585 8 N -0.637 5.637 9 C 0.005 3.995 10 C -0.112 4.112 11 C -0.165 4.165 12 C 0.075 3.925 13 C -0.496 4.496 14 H 0.075 0.925 15 C 0.031 3.969 16 N -0.831 5.831 17 Si 0.988 3.012 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.263 1.263 21 C -0.231 4.231 22 C -0.090 4.090 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.359 0.641 30 H 0.346 0.654 31 H 0.416 0.584 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.288 0.712 35 H 0.095 0.905 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 14.664 3.230 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.182 4.182 3 C -0.093 4.093 4 C -0.043 4.043 5 N -0.391 5.391 6 C 0.320 3.680 7 O -0.467 6.467 8 N -0.281 5.281 9 C -0.089 4.089 10 C -0.132 4.132 11 C -0.185 4.185 12 C 0.073 3.927 13 C -0.526 4.526 14 H 0.093 0.907 15 C -0.183 4.183 16 N -0.458 5.458 17 Si 0.809 3.191 18 H -0.182 1.182 19 H -0.190 1.190 20 H -0.188 1.188 21 C -0.252 4.252 22 C -0.110 4.110 23 H 0.102 0.898 24 H 0.091 0.909 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.255 0.745 32 H 0.143 0.857 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.915 14.019 2.530 16.805 hybrid contribution 0.705 -0.203 0.609 0.954 sum -8.210 13.815 3.138 16.374 Atomic orbital electron populations 1.20922 0.87952 1.04259 1.03924 1.21458 0.98248 0.90754 1.07698 1.23581 0.99932 0.94289 0.91502 1.21003 0.99476 0.90431 0.93341 1.58645 1.09427 1.26247 1.44786 1.19234 0.87259 0.85408 0.76085 1.90745 1.15910 1.88110 1.51921 1.42820 1.10644 1.03455 1.71219 1.17297 0.96851 0.87492 1.07218 1.20536 1.00421 0.93422 0.98851 1.20979 0.95193 0.97721 1.04613 1.18007 0.91616 0.92604 0.90509 1.19771 1.24245 1.03753 1.04822 0.90697 1.26785 0.93857 1.03961 0.93661 1.69855 1.33564 1.38422 1.03922 0.85162 0.79271 0.75889 0.78799 1.18186 1.19031 1.18787 1.20840 1.00551 0.94102 1.09665 1.20476 0.95247 0.96345 0.98932 0.89798 0.90940 0.88327 0.87965 0.87926 0.91980 0.82609 0.84128 0.74509 0.85713 0.86757 0.90094 0.88713 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 8.68 71.23 0.62 -1.21 16 2 C -0.18 -4.58 5.99 -18.72 -0.11 -4.69 16 3 C -0.07 -1.70 9.34 24.52 0.23 -1.47 16 4 C 0.09 1.28 6.86 85.56 0.59 1.87 16 5 N -0.86 -12.58 9.61 -190.00 -1.83 -14.40 16 6 C 0.53 19.70 7.57 86.55 0.66 20.35 16 7 O -0.58 -27.43 13.71 -4.14 -0.06 -27.49 16 8 N -0.64 -23.06 5.25 -306.40 -1.61 -24.67 16 9 C 0.01 0.23 6.28 38.61 0.24 0.48 16 10 C -0.11 -5.23 9.90 22.14 0.22 -5.01 16 11 C -0.17 -8.82 8.60 22.48 0.19 -8.63 16 12 C 0.08 4.26 5.55 -21.28 -0.12 4.14 16 13 C -0.50 -27.69 9.05 23.39 0.21 -27.48 16 14 H 0.07 4.03 7.87 -2.91 -0.02 4.01 16 15 C 0.03 1.60 5.25 85.24 0.45 2.05 16 16 N -0.83 -44.23 10.82 21.82 0.24 -43.99 16 17 Si 0.99 38.96 29.57 68.60 2.03 40.99 16 18 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 19 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 21 C -0.23 -12.59 9.74 22.48 0.22 -12.37 16 22 C -0.09 -4.61 8.60 22.14 0.19 -4.41 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.06 6.42 -2.39 -0.02 1.05 16 25 H 0.10 1.05 6.69 -2.39 -0.02 1.03 16 26 H 0.10 2.86 7.51 -2.91 -0.02 2.84 16 27 H 0.10 1.21 5.78 -2.38 -0.01 1.20 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.36 3.34 9.08 -89.70 -0.81 2.52 16 30 H 0.35 4.84 8.99 -89.69 -0.81 4.04 16 31 H 0.42 11.36 6.79 -92.72 -0.63 10.73 16 32 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 33 H 0.11 6.25 6.20 -2.91 -0.02 6.24 16 34 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 35 H 0.09 4.96 8.06 -2.91 -0.02 4.93 16 36 H 0.10 5.24 6.30 -2.91 -0.02 5.22 16 Total: -1.00 -71.31 304.02 1.25 -70.07 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -1.11 Total: 35.90 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 3.58 Total: -36.40 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -3.20 Total: -83.07 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.06 Total: -27.49 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -71.31 1.25 -70.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692516870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.732 kcal (2) G-P(sol) polarization free energy of solvation -71.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds