Wall clock time and date at job start Mon Mar 30 2020 04:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38403 * 120.85491 * 2 1 4 4 C 1.38300 * 119.30622 * 180.25502 * 3 2 1 5 5 N 1.31953 * 121.08603 * 359.76282 * 4 3 2 6 6 C 1.31670 * 121.87499 * 0.02562 * 5 4 3 7 7 C 1.39559 * 120.56401 * 359.97438 * 6 5 4 8 8 C 1.47847 * 120.55827 * 179.97438 * 7 6 5 9 9 O 1.21558 * 119.99767 * 124.24491 * 8 7 6 10 10 N 1.34774 * 119.99944 * 304.24965 * 8 7 6 11 11 C 1.46495 * 120.00343 * 356.09605 * 10 8 7 12 12 C 1.50697 * 109.47235 * 90.00027 * 11 10 8 13 13 H 1.07998 * 120.00024 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99924 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99836 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00126 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.46896 * 90.00289 * 16 14 12 18 18 H 1.48500 * 109.47262 * 210.00466 * 16 14 12 19 19 H 1.48501 * 109.47166 * 330.00368 * 16 14 12 20 20 C 1.46498 * 119.99705 * 176.37209 * 10 8 7 21 21 C 1.53000 * 117.50119 * 17.06505 * 20 10 8 22 22 C 1.52995 * 60.00164 * 252.51149 * 21 20 10 23 23 H 1.09003 * 109.46934 * 265.11222 * 1 2 3 24 24 H 1.09000 * 109.47431 * 25.11937 * 1 2 3 25 25 H 1.09008 * 109.46842 * 145.12216 * 1 2 3 26 26 H 1.08003 * 120.34218 * 0.03891 * 3 2 1 27 27 H 1.08003 * 119.46096 * 179.78463 * 4 3 2 28 28 H 1.07994 * 119.71672 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.47461 * 210.00275 * 11 10 8 30 30 H 1.08996 * 109.46900 * 330.00162 * 11 10 8 31 31 H 0.96999 * 120.00415 * 179.97438 * 15 14 12 32 32 H 1.09005 * 115.55146 * 162.77955 * 20 10 8 33 33 H 1.08994 * 117.49925 * 0.02562 * 21 20 10 34 34 H 1.09007 * 117.49760 * 145.02207 * 21 20 10 35 35 H 1.09001 * 117.49915 * 252.50808 * 22 21 20 36 36 H 1.08998 * 117.51874 * 107.48463 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1508 -0.0054 5 7 4.2498 0.0027 -0.0058 6 6 3.6198 -1.1534 -0.0017 7 6 2.2251 -1.2016 0.0039 8 6 1.5177 -2.4999 0.0079 9 8 0.7102 -2.7493 0.8816 10 7 1.7684 -3.4068 -0.9570 11 6 2.6768 -3.0740 -2.0570 12 6 4.0842 -3.4592 -1.6803 13 1 4.2821 -3.9074 -0.7179 14 6 5.1192 -3.2392 -2.5643 15 7 6.3473 -3.5758 -2.2357 16 14 4.7768 -2.4646 -4.2292 17 1 4.8862 -0.9876 -4.1198 18 1 5.7652 -2.9622 -5.2194 19 1 3.4067 -2.8280 -4.6719 20 6 1.1276 -4.7234 -0.9090 21 6 -0.0935 -4.8821 -0.0010 22 6 1.2411 -5.5172 0.3941 23 1 -0.3633 -0.0876 1.0240 24 1 -0.3634 0.9305 -0.4362 25 1 -0.3633 -0.8431 -0.5877 26 1 1.6965 2.1346 0.0006 27 1 4.1557 2.0764 -0.0089 28 1 4.1872 -2.0723 -0.0026 29 1 2.3783 -3.6192 -2.9524 30 1 2.6334 -2.0026 -2.2525 31 1 7.0755 -3.4215 -2.8577 32 1 1.1372 -5.2852 -1.8430 33 1 -0.4205 -4.0069 0.5603 34 1 -0.8879 -5.5483 -0.3377 35 1 1.3249 -6.6013 0.3173 36 1 1.7928 -5.0601 1.2155 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694759305.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:16 Heat of formation + Delta-G solvation = 43.346707 kcal Electronic energy + Delta-G solvation = -19980.411392 eV Core-core repulsion = 17045.240464 eV Total energy + Delta-G solvation = -2935.170928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41464 -38.92477 -35.91821 -34.40987 -33.46120 -32.31872 -30.65648 -27.91369 -27.58978 -24.26078 -22.70804 -22.20771 -21.88452 -21.37360 -18.94631 -17.22222 -16.56148 -16.21900 -15.79599 -15.53619 -14.86105 -14.39994 -14.12440 -13.68430 -13.50200 -13.09875 -12.75517 -12.56777 -12.47399 -12.35033 -12.29846 -11.93514 -11.50224 -11.29390 -10.99218 -10.75788 -10.65897 -10.10662 -9.86636 -9.63269 -9.29367 -9.10857 -8.79650 -8.70777 -8.48720 -7.68757 -6.27981 -4.29214 1.30324 1.66354 3.13158 3.16901 3.22103 3.25216 3.59280 4.22758 4.26540 4.46807 4.81015 4.94947 5.02412 5.11269 5.14797 5.39334 5.42042 5.53708 5.57945 5.71701 5.74942 5.81048 6.07192 6.12788 6.17916 6.22848 6.35793 6.40318 6.50216 6.58079 6.67548 6.80325 7.19817 7.33800 7.39893 7.95759 8.30371 8.47693 8.70210 8.77551 9.30289 10.83289 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.013861 B = 0.011311 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.557976 B = 2474.826999 C = 3838.821762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.007 4.007 3 C -0.199 4.199 4 C 0.109 3.891 5 N -0.489 5.489 6 C 0.166 3.834 7 C -0.183 4.183 8 C 0.571 3.429 9 O -0.551 6.551 10 N -0.555 5.555 11 C 0.209 3.791 12 C -0.547 4.547 13 H 0.084 0.916 14 C 0.086 3.914 15 N -0.878 5.878 16 Si 0.867 3.133 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.265 1.265 20 C 0.086 3.914 21 C -0.207 4.207 22 C -0.186 4.186 23 H 0.081 0.919 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.131 0.869 27 H 0.151 0.849 28 H 0.193 0.807 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.269 0.731 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 5.365 1.411 11.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.016 4.016 3 C -0.219 4.219 4 C -0.048 4.048 5 N -0.198 5.198 6 C 0.009 3.991 7 C -0.188 4.188 8 C 0.360 3.640 9 O -0.433 6.433 10 N -0.282 5.282 11 C 0.088 3.912 12 C -0.584 4.584 13 H 0.102 0.898 14 C -0.120 4.120 15 N -0.514 5.514 16 Si 0.693 3.307 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.190 1.190 20 C -0.019 4.019 21 C -0.244 4.244 22 C -0.224 4.224 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.149 0.851 27 H 0.168 0.832 28 H 0.209 0.791 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.231 5.231 1.735 10.751 hybrid contribution -0.669 0.353 -1.149 1.375 sum -9.900 5.584 0.586 11.381 Atomic orbital electron populations 1.20790 0.90297 1.02469 1.03260 1.20252 0.96483 0.91828 0.93009 1.21810 0.95655 0.97915 1.06525 1.22915 0.91573 0.96800 0.93494 1.67873 1.40646 0.98216 1.13051 1.24116 0.90431 0.97566 0.86968 1.20857 0.96061 0.93714 1.08189 1.18084 0.81215 0.83551 0.81185 1.90475 1.35618 1.79075 1.38082 1.47307 1.43883 1.11931 1.25087 1.19880 0.89738 0.96305 0.85259 1.21267 0.89207 1.43209 1.04750 0.89831 1.24795 0.94828 0.94449 0.97888 1.69861 0.99464 1.45684 1.36403 0.86985 0.78765 0.80460 0.84496 1.19725 1.20697 1.18983 1.21514 0.99106 0.85810 0.95477 1.24094 0.91166 1.05046 1.04119 1.23123 1.01018 0.98621 0.99686 0.90058 0.91498 0.91255 0.85093 0.83208 0.79054 0.94473 0.95362 0.92125 0.85774 0.83916 0.90199 0.89115 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.17 36.01 0.33 -1.21 16 2 C -0.01 -0.12 5.95 -103.91 -0.62 -0.74 16 3 C -0.20 -2.93 9.79 -39.50 -0.39 -3.31 16 4 C 0.11 1.76 11.17 -17.48 -0.20 1.56 16 5 N -0.49 -9.92 10.35 -12.91 -0.13 -10.05 16 6 C 0.17 3.54 9.07 -17.13 -0.16 3.38 16 7 C -0.18 -3.62 4.46 -104.82 -0.47 -4.08 16 8 C 0.57 11.64 5.92 -12.33 -0.07 11.57 16 9 O -0.55 -11.44 12.28 5.31 0.07 -11.37 16 10 N -0.56 -11.34 2.82 -168.58 -0.48 -11.81 16 11 C 0.21 4.62 3.84 -5.20 -0.02 4.60 16 12 C -0.55 -13.84 7.02 -34.44 -0.24 -14.08 16 13 H 0.08 2.34 7.56 -52.49 -0.40 1.94 16 14 C 0.09 2.27 5.47 -17.82 -0.10 2.17 16 15 N -0.88 -24.85 13.96 55.43 0.77 -24.08 16 16 Si 0.87 19.94 27.47 -169.99 -4.67 15.27 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 20 C 0.09 1.56 6.62 -67.93 -0.45 1.11 16 21 C -0.21 -3.40 9.64 -26.73 -0.26 -3.66 16 22 C -0.19 -3.21 9.90 -26.73 -0.26 -3.47 16 23 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 25 H 0.07 1.03 7.32 -51.92 -0.38 0.65 16 26 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 27 H 0.15 1.88 8.06 -52.48 -0.42 1.46 16 28 H 0.19 4.57 5.18 -52.49 -0.27 4.30 16 29 H 0.04 0.81 7.09 -51.93 -0.37 0.44 16 30 H 0.03 0.64 6.10 -51.93 -0.32 0.32 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.12 2.06 8.09 -51.93 -0.42 1.64 16 33 H 0.14 2.62 4.96 -53.43 -0.26 2.36 16 34 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 1.79 7.82 -51.93 -0.41 1.38 16 LS Contribution 296.68 15.07 4.47 4.47 Total: -1.00 -28.78 296.68 -7.39 -36.17 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -4.52 Total: 7.56 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.90 Total: -6.16 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.16 Total: -45.94 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.07 Total: -11.37 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.27 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.78 -7.39 -36.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694759305.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.514 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds